Moctig00038g070 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moctig00038g070
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Protein no-on-transient A-like
Location	tig00000038_pilon: 36343 .. 38291 (-)
RNA-Seq Expression	Moctig00038g070
Synteny	Moctig00038g070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCGCCGGAACGTTCTTCAGACGGCGGCTCGTCGGATTGCAGATAACGGTGCCGAGTCCTCTTCCGAAGGGAAAATCAATGTTCATATCAAAAAGGGGATCCGAGGCCGACCAATAGGAATTCCCCGCGGTCGTAAATCGGCGGCGAATCGGAGCCGAGTAGCATCCTTCGGCGTCGGATCTGTGCTGGGATCTGCGCTTTTTTCGGATTGTTCGCGTGAATGATTTTTTTTTTCTTTTTCTTTTGTAAAAATTGGATTCAGATTTATTTATTTATTGAAGAAATACTTGAGTGTACTGTTGTATGCATGCGTTTTATTTTCTTTTTTTGGAAAGTTGGGTGTATTTGTACTCCGTTTGGGTCTATAAATTCAAGAAAATATAGATTTAAATTCTCTAATTTGAAACGTTGAGATGATTTTTTTTTATTGGATGATTTGAAATGAATATAATCATTATTATTTACTTTAAAAAAAAATAGGTTGGGTGGTGAATCGAACTCATAACGTCTTTGTTGGACATATATGAGACAAAACTTCTCCCTTGAAAATTTACGAGAAAGCTCTCTCCTGATTATCATGCGTAGTCCACTAACATATAAACAAGTAGATTTTTAATTTTGTATAATTCCTATGTAATCCACTTGTCTATATATTACTATTACCATATAGAAATTCATAAGGAGCTTCCTCGATGGAAGTTTTTTCCTATAAAAATTACATGCTCACGTTGACTAATATAATTATTATTGTTGACATATTAGTTAAATGCGAAGTGACTTGTTAATTGAACTAATAATGATGATTTAACACAATATAACGATAAGTGAGTCAGATGGTATATGAGATATCGTGTACCAAATGATTCTTAAATTGTTTACCATTATATAATTTTTTTGGTACTACAATTTTATAATTAAATATATGAAAATGAGTCAATTTGAACTATCAAAAAGTCAAAAGTCTAAAAAAAAAAACGAGTATAGCTTAGCTGTAATTGACATATAAATCCCACCTTACAGTCGTACTAAAAAAGAAGTCAGAAGTCTCTCCACATGTTTTTTATACATATATATGTTGGGTGTGAAAATAAATAATTTTTCACTAATTATTTTATAATTATATATACCTCAAACCATTACAGGAGCCTCTTTTAAAAAAAACTTTGAAAATCTTAGAAAATTAAAGAGAAAAATGGAGATCTATTTCCAAAATTGACTATTTTTAGTTTTAGAAAGTTTCCTAATATACTAAAAACCGGTTTTTTTATAAAAAAAAAAAAAAAAAAAACTCCAACCTCAAGAGAAACTCACAACATAATTCATCAACGTTAATTTTTATTTTTATTTTTTTAATACGAATGAGGGATCGATATTCTCGCTTTGACTCGTTAATTTTGATTATTATACTAAAAAAATAGCCAAAACAAATATTTCCAAGAACTCAAATGAAAAAAAAAAAATAGAACGTTTTGAAAGTGGCCCAGCGGATTATTACTTGAACCAAATTTCACCTATCGAATGGATGATTTATATAATGAAACCACGGCTCAAGGGGGAAGCGGCGGCGTCAAATCCATGGTCAATTGTGGCCGAACCTGAAATTCATCTTCCTACAAATCCCAAATTATCTACAAATTGAATCGATTGCACATTTTTACCAAAATCTCTGTTCTTCGATTCACTTCTCCATCAAAAAACACTCAAATTAATGGCTGCCATTAAAGCCCTAGTTCCGTTACTTCTTCTCGCTCTTCTCTTGTTCTCTGAATCCCTAGCCACTTCCGCCGCCGCTCACGGCGAGCCTTGGAATTCGCCCTCCGGAATGCTCTGCCGGAACATTCTTCAGACGCGGCTCATCGGATTGCAGATAACGGTGCAGAGTCCTCTTCCGGAGGGAAAATCAACGTTCATATCAAAAAGGGGATCGGATCCAGACCTAGAGTAA

mRNA sequence

ATGGTCCGCCGGAACGTTCTTCAGACGGCGGCTCGTCGGATTGCAGATAACGGTGCCGAGTCCTCTTCCGAAGGGAAAATCAATGTTCATATCAAAAAGGGGATCCGAGGCCGACCAATAGGAATTCCCCGCGGTCGTAAATCGGCGGCGAATCGGAGCCGAGTAGCATCCTTCGGCGTCGGATCTGTGCTGGGATCTGCGCTTTTTTCGGATTCCACTTCCGCCGCCGCTCACGGCGAGCCTTGGAATTCGCCCTCCGGAATGCTCTGCCGGAACATTCTTCAGACGCGGCTCATCGGATTGCAGATAACGGTGCAGAGTCCTCTTCCGGAGGGAAAATCAACGTTCATATCAAAAAGGGGATCGGATCCAGACCTAGAGTAA

Coding sequence (CDS)

ATGGTCCGCCGGAACGTTCTTCAGACGGCGGCTCGTCGGATTGCAGATAACGGTGCCGAGTCCTCTTCCGAAGGGAAAATCAATGTTCATATCAAAAAGGGGATCCGAGGCCGACCAATAGGAATTCCCCGCGGTCGTAAATCGGCGGCGAATCGGAGCCGAGTAGCATCCTTCGGCGTCGGATCTGTGCTGGGATCTGCGCTTTTTTCGGATTCCACTTCCGCCGCCGCTCACGGCGAGCCTTGGAATTCGCCCTCCGGAATGCTCTGCCGGAACATTCTTCAGACGCGGCTCATCGGATTGCAGATAACGGTGCAGAGTCCTCTTCCGGAGGGAAAATCAACGTTCATATCAAAAAGGGGATCGGATCCAGACCTAGAGTAA

Protein sequence

MVRRNVLQTAARRIADNGAESSSEGKINVHIKKGIRGRPIGIPRGRKSAANRSRVASFGVGSVLGSALFSDSTSAAAHGEPWNSPSGMLCRNILQTRLIGLQITVQSPLPEGKSTFISKRGSDPDLE

Homology

[Close]

BLAST of Moctig00038g070 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-09
Identity = 43/64 (67.19%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 1  MVRRNVLQTAARRIADNGAESSSEGKINVHIKKGIRGRPIGIPRGRKSAANRSRVASFGV 60
          M+RRNVLQTAA +IADN  ESS E K+NVHIK+  R RP+     R SAANRSR+AS GV
Sbjct: 39 MLRRNVLQTAAHQIADNSVESSPERKMNVHIKR--RMRPVATGT-RSSAANRSRIASIGV 98

Query: 61 GSVL 65
          GSVL
Sbjct: 99 GSVL 99

[Close]

BLAST of Moctig00038g070 vs. NCBI nr
Match: KAA0068047.1 (protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no-on-transient A-like [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-06
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 1   MVRRNVLQTAARRIADNGAESSSEGKINVHIKKGIRG--RPI----GIPRGRKSAANRSR 60
           M+RRNVLQTA   IAD      SEGK+NVHIK+G  G  RP+    G    RKSAA+RS+
Sbjct: 39  MLRRNVLQTATHEIAD------SEGKMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQ 98

Query: 61  VASFGVGSVL 65
           VASFG+G +L
Sbjct: 99  VASFGLGFLL 102

[Close]

BLAST of Moctig00038g070 vs. NCBI nr
Match: KGN44886.1 (hypothetical protein Csa_015765 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 9.5e-06
Identity = 41/69 (59.42%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1   MVRRNVLQTAARRIADNGAESSSEGKINVHIKKGIRG--RPIGIPRG---RKSAANRSRV 60
           M+RRN+LQTA   IAD      SEGK+NV IKKG  G  RPIG   G   R SAANRSRV
Sbjct: 39  MLRRNILQTATHEIAD------SEGKMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRV 98

Query: 61  ASFGVGSVL 65
            SFG+G +L
Sbjct: 99  DSFGLGFLL 101

[Close]

BLAST of Moctig00038g070 vs. ExPASy TrEMBL
Match: A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.5e-06
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 1   MVRRNVLQTAARRIADNGAESSSEGKINVHIKKGIRG--RPI----GIPRGRKSAANRSR 60
           M+RRNVLQTA   IAD      SEGK+NVHIK+G  G  RP+    G    RKSAA+RS+
Sbjct: 39  MLRRNVLQTATHEIAD------SEGKMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQ 98

Query: 61  VASFGVGSVL 65
           VASFG+G +L
Sbjct: 99  VASFGLGFLL 102

[Close]

BLAST of Moctig00038g070 vs. ExPASy TrEMBL
Match: A0A0A0KAQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-06
Identity = 41/69 (59.42%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1   MVRRNVLQTAARRIADNGAESSSEGKINVHIKKGIRG--RPIGIPRG---RKSAANRSRV 60
           M+RRN+LQTA   IAD      SEGK+NV IKKG  G  RPIG   G   R SAANRSRV
Sbjct: 39  MLRRNILQTATHEIAD------SEGKMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRV 98

Query: 61  ASFGVGSVL 65
            SFG+G +L
Sbjct: 99  DSFGLGFLL 101

The following BLAST results are available for this feature:

BLAST of Moctig00038g070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575859.1	3.2e-09	67.19	hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0068047.1	7.3e-06	57.14	protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no...	[more]
KGN44886.1	9.5e-06	59.42	hypothetical protein Csa_015765 [Cucumis sativus]	[more]

BLAST of Moctig00038g070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moctig00038g070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VLE5	3.5e-06	57.14	Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0KAQ7	4.6e-06	59.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1	[more]

BLAST of Moctig00038g070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moctig00038g070.1	Moctig00038g070.1	mRNA