Moc11g30180 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc11g30180
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr11: 22057543 .. 22058061 (-)
RNA-Seq ExpressionMoc11g30180
SyntenyMoc11g30180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCCTCCAAGAACACTTCAGATGACTCTGCAAATTCATATATGGCAGGTACGTCACCTAATTCATTGCCTGAAAATCGATTGTAGATTTTCGATTATGGTGCTTCGGTGCACATTTGCTGTTCAGCATCTCTTTATCAATCTTTGGCGAAGATTTCTCTGGTTGTTGTCGGTTTACATAATAAGTCCAATTTCACAGTGGAGTATGATGGAACTGTTAAGCTCACATCAGAAATTTATATCACTAATGTTTTCTATATTCCTACTTTCCACTACAACCTGATTTCGATCAGTGGTTTAACCAAGGAATTTCTAGACGTACAGATTCTGTTTGCGGATAATTCTTGTGTTGCTCAGGACAAGTCCACTTCGAGGATGATTGAAAGAAGTAAATTGAGAAATTGTCTCTATTTTCTTGAGGATTCTTCATTGACTGGTGATGTTCCCTCATTACATTATGATGTTCATACTTCTATGGCTGTTAGTAATACATTTGATATTTGGCACAATCGTTAA

mRNA sequence

ATGAATGCCTCCAAGAACACTTCAGATGACTCTGCAAATTCATATATGGCAGCATCTCTTTATCAATCTTTGGCGAAGATTTCTCTGGTTGTTGTCGGTTTACATAATAAGTCCAATTTCACAGTGGAGTATGATGGAACTGTTAAGCTCACATCAGAAATTTATATCACTAATGTTTTCTATATTCCTACTTTCCACTACAACCTGATTTCGATCAGTGGTTTAACCAAGGAATTTCTAGACGTACAGATTCTGTTTGCGGATAATTCTTGTGTTGCTCAGGACAAGTCCACTTCGAGGATGATTGAAAGAAGTAAATTGAGAAATTGTCTCTATTTTCTTGAGGATTCTTCATTGACTGGTGATGTTCCCTCATTACATTATGATGTTCATACTTCTATGGCTGTTAGTAATACATTTGATATTTGGCACAATCGTTAA

Coding sequence (CDS)

ATGAATGCCTCCAAGAACACTTCAGATGACTCTGCAAATTCATATATGGCAGCATCTCTTTATCAATCTTTGGCGAAGATTTCTCTGGTTGTTGTCGGTTTACATAATAAGTCCAATTTCACAGTGGAGTATGATGGAACTGTTAAGCTCACATCAGAAATTTATATCACTAATGTTTTCTATATTCCTACTTTCCACTACAACCTGATTTCGATCAGTGGTTTAACCAAGGAATTTCTAGACGTACAGATTCTGTTTGCGGATAATTCTTGTGTTGCTCAGGACAAGTCCACTTCGAGGATGATTGAAAGAAGTAAATTGAGAAATTGTCTCTATTTTCTTGAGGATTCTTCATTGACTGGTGATGTTCCCTCATTACATTATGATGTTCATACTTCTATGGCTGTTAGTAATACATTTGATATTTGGCACAATCGTTAA

Protein sequence

MNASKNTSDDSANSYMAASLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSNTFDIWHNR
Homology
BLAST of Moc11g30180 vs. NCBI nr
Match: XP_022143573.1 (uncharacterized protein LOC111013441 [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 5.8e-15
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 0

Query: 11  SANSYMAASLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLI 70
           SA+      L+  + KIS V V L NK  F VEY G V+L+  + I  V YIP F++NLI
Sbjct: 251 SAHICGCRKLFDKIHKISPVHVNLPNKPRFVVEYSGFVRLSDHLSIHGVLYIPEFYFNLI 310

Query: 71  SISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSLHYDV 130
           S++ L ++   + + F +++C+ QDKS S+ I++ +L + LY L++   T +  S    +
Sbjct: 311 SVNVLLRDMPSLSVEFTNDTCIIQDKSISKTIDKGRLCHGLYLLDN---TSECSSTVQSI 370

Query: 131 HTSMAVSNTFDIWHNR 147
             S     +FD+WHNR
Sbjct: 371 CVSAFTLVSFDVWHNR 383

BLAST of Moc11g30180 vs. NCBI nr
Match: XP_019420691.1 (PREDICTED: uncharacterized protein LOC109330875 [Lupinus angustifolius])

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-13
Identity = 49/128 (38.28%), Postives = 77/128 (60.16%), Query Frame = 0

Query: 19  SLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKE 78
           SLY +  +I  +++ L N +  T  + GT+  ++++Y+TNV Y+PTF++NL+SIS LT  
Sbjct: 325 SLYLNFKRIKPLLIALPNGNQVTTHHSGTIVFSNDLYLTNVLYVPTFNFNLVSISKLTTS 384

Query: 79  FLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSN 138
            L   + F++N C  QD  + +MI  ++LR  LY L  SS      S H +++TS   SN
Sbjct: 385 -LACTLTFSNNHCQIQDTQSLKMIGAAELRGGLYMLSQSS-KKYCESTHVNLYTSYDDSN 444

Query: 139 TFDIWHNR 147
              IWH+R
Sbjct: 445 ---IWHSR 447

BLAST of Moc11g30180 vs. NCBI nr
Match: XP_019438974.1 (PREDICTED: uncharacterized protein LOC109344676 [Lupinus angustifolius])

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-12
Identity = 47/128 (36.72%), Postives = 74/128 (57.81%), Query Frame = 0

Query: 19  SLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKE 78
           +LYQ+  +I  +++ L N    T  + GT+  + ++Y+T+V ++PTF++NLISIS LT  
Sbjct: 412 TLYQNFKRIKPLLIALPNGEQVTTHHSGTIVFSDDLYLTDVLHVPTFNFNLISISKLTTS 471

Query: 79  FLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSN 138
            L   + F  N C  Q+  +  MI  +KL+ CLY L  SS   +  S H +V+T    SN
Sbjct: 472 -LACTLTFYTNHCQIQEPHSLSMIGAAKLKGCLYVLTQSS-KKNFESHHVNVYTGYDDSN 531

Query: 139 TFDIWHNR 147
              +WH+R
Sbjct: 532 ---VWHSR 534

BLAST of Moc11g30180 vs. NCBI nr
Match: KYP64431.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 78.2 bits (191), Expect = 6.6e-11
Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 0

Query: 9   DDSANSYMAASL--YQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFH 68
           D  A  ++  SL  + +   I  + + L N S    ++ GT++L+ +  + +V Y+P F 
Sbjct: 13  DTGATDHVCQSLTYFDAFTAIRPIQIKLPNGSAVLAKFSGTIRLSRDFVLYDVLYVPEFK 72

Query: 69  YNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSL 128
           YNLISI  LTK  +  +++F D  CV QD +T +MI R+ ++NCLY L   +    VP+ 
Sbjct: 73  YNLISIPKLTKT-IKCKLIFDDLHCVIQDMTTLKMIGRADVQNCLYVLSQPT-KPQVPNQ 132

Query: 129 HYDVHTSMAVSNT---FDIWHNR 147
           H  +++ +A + T   FD+WH R
Sbjct: 133 HI-INSIIAKNPTVPFFDLWHFR 152

BLAST of Moc11g30180 vs. NCBI nr
Match: XP_017426279.1 (PREDICTED: uncharacterized protein LOC108334859 [Vigna angularis])

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-11
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 0

Query: 9   DDSANSYMAAS--LYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFH 68
           D  A+ ++++S  LY S   I  + V L N       Y GT+K+   + I+NV Y+P F+
Sbjct: 419 DSGASDHVSSSLNLYSSYKAIDPITVKLPNGQQTIASYSGTIKINDSLSISNVLYLPQFN 478

Query: 69  YNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSL 128
           +NLIS+S LT    + Q++F DN C  QDK + RMI     ++ LY L+ S         
Sbjct: 479 FNLISVSKLTTVH-NCQLIFLDNQCFIQDKHSKRMIGIVDAQDGLYTLKTS--------- 538

Query: 129 HYDVHTSMAVSNTFDIWHNR 147
              ++T++      DIWH R
Sbjct: 539 FSSINTTICNKEAIDIWHYR 548

BLAST of Moc11g30180 vs. ExPASy TrEMBL
Match: A0A6J1CR17 (uncharacterized protein LOC111013441 OS=Momordica charantia OX=3673 GN=LOC111013441 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.8e-15
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 0

Query: 11  SANSYMAASLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLI 70
           SA+      L+  + KIS V V L NK  F VEY G V+L+  + I  V YIP F++NLI
Sbjct: 251 SAHICGCRKLFDKIHKISPVHVNLPNKPRFVVEYSGFVRLSDHLSIHGVLYIPEFYFNLI 310

Query: 71  SISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSLHYDV 130
           S++ L ++   + + F +++C+ QDKS S+ I++ +L + LY L++   T +  S    +
Sbjct: 311 SVNVLLRDMPSLSVEFTNDTCIIQDKSISKTIDKGRLCHGLYLLDN---TSECSSTVQSI 370

Query: 131 HTSMAVSNTFDIWHNR 147
             S     +FD+WHNR
Sbjct: 371 CVSAFTLVSFDVWHNR 383

BLAST of Moc11g30180 vs. ExPASy TrEMBL
Match: A0A151TBK6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_019027 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 0

Query: 9   DDSANSYMAASL--YQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFH 68
           D  A  ++  SL  + +   I  + + L N S    ++ GT++L+ +  + +V Y+P F 
Sbjct: 13  DTGATDHVCQSLTYFDAFTAIRPIQIKLPNGSAVLAKFSGTIRLSRDFVLYDVLYVPEFK 72

Query: 69  YNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSL 128
           YNLISI  LTK  +  +++F D  CV QD +T +MI R+ ++NCLY L   +    VP+ 
Sbjct: 73  YNLISIPKLTKT-IKCKLIFDDLHCVIQDMTTLKMIGRADVQNCLYVLSQPT-KPQVPNQ 132

Query: 129 HYDVHTSMAVSNT---FDIWHNR 147
           H  +++ +A + T   FD+WH R
Sbjct: 133 HI-INSIIAKNPTVPFFDLWHFR 152

BLAST of Moc11g30180 vs. ExPASy TrEMBL
Match: Q2HT49 (Integrase, catalytic region OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC150777g32v1 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.9e-10
Identity = 50/150 (33.33%), Postives = 79/150 (52.67%), Query Frame = 0

Query: 9   DDSANSYMAAS--LYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFH 68
           D  AN+++ +S   + S  KI    V L NK+   V+Y G V  +S +Y+TNV Y PTF+
Sbjct: 393 DSGANNHICSSSLCFTSFYKIKPTNVNLPNKTTVLVQYAGNVSFSSSLYLTNVLYCPTFN 452

Query: 69  YNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSL 128
            NLIS+S + K  L   + F+ +SC+ Q+ ST RMI   +  + LY L  S+ +   PS 
Sbjct: 453 LNLISVSKMCKS-LSCFVNFSTDSCIIQELSTKRMIGLGENIHGLYRLVVSADSFQSPSH 512

Query: 129 HYDVHTSMAVSNTFD----------IWHNR 147
            ++ +  ++ +N             +WH R
Sbjct: 513 RFNNNLFVSCNNVSQSHFIVIPNSALWHYR 541

BLAST of Moc11g30180 vs. ExPASy TrEMBL
Match: A0A2N9FB24 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11866 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 49/150 (32.67%), Postives = 74/150 (49.33%), Query Frame = 0

Query: 9   DDSANSYMAAS--LYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFH 68
           D  A  +M  S   + S+  +  V+V L N  N +V + GT+ LT  + ++NV Y+ +F 
Sbjct: 356 DTGATDHMVISTQFFTSMTIVHDVIVTLLNGHNVSVTHTGTITLTDTLILSNVLYVSSFD 415

Query: 69  YNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSL 128
           +NLIS+S LT   L   + F  N C  +D    +MI   K RN LY L+ S+    VP+ 
Sbjct: 416 FNLISVSKLTSS-LHCCLFFLSNFCFIKDLQLWKMIGLGKQRNGLYILQKSADANYVPAF 475

Query: 129 H----------YDVHTSMAVSNTFDIWHNR 147
                      Y + +    +N+F IWH R
Sbjct: 476 DIPCADFTKVLYSLSSIKQSNNSFHIWHCR 504

BLAST of Moc11g30180 vs. ExPASy TrEMBL
Match: A0A396GD37 (Putative RNA-directed DNA polymerase OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0334511 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 45/149 (30.20%), Postives = 72/149 (48.32%), Query Frame = 0

Query: 21  YQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFL 80
           + ++ KI  ++V   N +     Y G++  +  +Y+ NV ++P FH ++ISIS LTK  L
Sbjct: 256 FTTIFKIKPILVSFPNGNLLFASYAGSIHFSENLYLDNVLFLPEFHLSIISISQLTKN-L 315

Query: 81  DVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVP-SLHYDV--------- 140
           +  ++F+ NSC+ QD ST R I   +L N LY L  +      P S+ + V         
Sbjct: 316 NCLLIFSSNSCMLQDTSTQRTIGDVELINNLYILNQTPKDHSFPNSVSFSVTTDDSQSAT 375

Query: 141 -------------HTSMAVSNTFDIWHNR 147
                        H+  +  N FD+WH R
Sbjct: 376 ENLNNTSFPSSVNHSISSFHNNFDVWHYR 403

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143573.15.8e-1536.76uncharacterized protein LOC111013441 [Momordica charantia][more]
XP_019420691.11.9e-1338.28PREDICTED: uncharacterized protein LOC109330875 [Lupinus angustifolius][more]
XP_019438974.12.1e-1236.72PREDICTED: uncharacterized protein LOC109344676 [Lupinus angustifolius][more]
KYP64431.16.6e-1134.27Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
XP_017426279.18.6e-1134.29PREDICTED: uncharacterized protein LOC108334859 [Vigna angularis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CR172.8e-1536.76uncharacterized protein LOC111013441 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A151TBK63.2e-1134.27Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... [more]
Q2HT497.9e-1033.33Integrase, catalytic region OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC150777g... [more]
A0A2N9FB241.0e-0932.67Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A396GD371.3e-0930.20Putative RNA-directed DNA polymerase OS=Medicago truncatula OX=3880 GN=MtrunA17_... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc11g30180.1Moc11g30180.1mRNA