Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCCTCCAAGAACACTTCAGATGACTCTGCAAATTCATATATGGCAGGTACGTCACCTAATTCATTGCCTGAAAATCGATTGTAGATTTTCGATTATGGTGCTTCGGTGCACATTTGCTGTTCAGCATCTCTTTATCAATCTTTGGCGAAGATTTCTCTGGTTGTTGTCGGTTTACATAATAAGTCCAATTTCACAGTGGAGTATGATGGAACTGTTAAGCTCACATCAGAAATTTATATCACTAATGTTTTCTATATTCCTACTTTCCACTACAACCTGATTTCGATCAGTGGTTTAACCAAGGAATTTCTAGACGTACAGATTCTGTTTGCGGATAATTCTTGTGTTGCTCAGGACAAGTCCACTTCGAGGATGATTGAAAGAAGTAAATTGAGAAATTGTCTCTATTTTCTTGAGGATTCTTCATTGACTGGTGATGTTCCCTCATTACATTATGATGTTCATACTTCTATGGCTGTTAGTAATACATTTGATATTTGGCACAATCGTTAA
mRNA sequence
ATGAATGCCTCCAAGAACACTTCAGATGACTCTGCAAATTCATATATGGCAGCATCTCTTTATCAATCTTTGGCGAAGATTTCTCTGGTTGTTGTCGGTTTACATAATAAGTCCAATTTCACAGTGGAGTATGATGGAACTGTTAAGCTCACATCAGAAATTTATATCACTAATGTTTTCTATATTCCTACTTTCCACTACAACCTGATTTCGATCAGTGGTTTAACCAAGGAATTTCTAGACGTACAGATTCTGTTTGCGGATAATTCTTGTGTTGCTCAGGACAAGTCCACTTCGAGGATGATTGAAAGAAGTAAATTGAGAAATTGTCTCTATTTTCTTGAGGATTCTTCATTGACTGGTGATGTTCCCTCATTACATTATGATGTTCATACTTCTATGGCTGTTAGTAATACATTTGATATTTGGCACAATCGTTAA
Coding sequence (CDS)
ATGAATGCCTCCAAGAACACTTCAGATGACTCTGCAAATTCATATATGGCAGCATCTCTTTATCAATCTTTGGCGAAGATTTCTCTGGTTGTTGTCGGTTTACATAATAAGTCCAATTTCACAGTGGAGTATGATGGAACTGTTAAGCTCACATCAGAAATTTATATCACTAATGTTTTCTATATTCCTACTTTCCACTACAACCTGATTTCGATCAGTGGTTTAACCAAGGAATTTCTAGACGTACAGATTCTGTTTGCGGATAATTCTTGTGTTGCTCAGGACAAGTCCACTTCGAGGATGATTGAAAGAAGTAAATTGAGAAATTGTCTCTATTTTCTTGAGGATTCTTCATTGACTGGTGATGTTCCCTCATTACATTATGATGTTCATACTTCTATGGCTGTTAGTAATACATTTGATATTTGGCACAATCGTTAA
Protein sequence
MNASKNTSDDSANSYMAASLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSNTFDIWHNR
Homology
BLAST of Moc11g30180 vs. NCBI nr
Match:
XP_022143573.1 (uncharacterized protein LOC111013441 [Momordica charantia])
HSP 1 Score: 91.7 bits (226), Expect = 5.8e-15
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 0
Query: 11 SANSYMAASLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLI 70
SA+ L+ + KIS V V L NK F VEY G V+L+ + I V YIP F++NLI
Sbjct: 251 SAHICGCRKLFDKIHKISPVHVNLPNKPRFVVEYSGFVRLSDHLSIHGVLYIPEFYFNLI 310
Query: 71 SISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSLHYDV 130
S++ L ++ + + F +++C+ QDKS S+ I++ +L + LY L++ T + S +
Sbjct: 311 SVNVLLRDMPSLSVEFTNDTCIIQDKSISKTIDKGRLCHGLYLLDN---TSECSSTVQSI 370
Query: 131 HTSMAVSNTFDIWHNR 147
S +FD+WHNR
Sbjct: 371 CVSAFTLVSFDVWHNR 383
BLAST of Moc11g30180 vs. NCBI nr
Match:
XP_019420691.1 (PREDICTED: uncharacterized protein LOC109330875 [Lupinus angustifolius])
HSP 1 Score: 86.7 bits (213), Expect = 1.9e-13
Identity = 49/128 (38.28%), Postives = 77/128 (60.16%), Query Frame = 0
Query: 19 SLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKE 78
SLY + +I +++ L N + T + GT+ ++++Y+TNV Y+PTF++NL+SIS LT
Sbjct: 325 SLYLNFKRIKPLLIALPNGNQVTTHHSGTIVFSNDLYLTNVLYVPTFNFNLVSISKLTTS 384
Query: 79 FLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSN 138
L + F++N C QD + +MI ++LR LY L SS S H +++TS SN
Sbjct: 385 -LACTLTFSNNHCQIQDTQSLKMIGAAELRGGLYMLSQSS-KKYCESTHVNLYTSYDDSN 444
Query: 139 TFDIWHNR 147
IWH+R
Sbjct: 445 ---IWHSR 447
BLAST of Moc11g30180 vs. NCBI nr
Match:
XP_019438974.1 (PREDICTED: uncharacterized protein LOC109344676 [Lupinus angustifolius])
HSP 1 Score: 83.2 bits (204), Expect = 2.1e-12
Identity = 47/128 (36.72%), Postives = 74/128 (57.81%), Query Frame = 0
Query: 19 SLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKE 78
+LYQ+ +I +++ L N T + GT+ + ++Y+T+V ++PTF++NLISIS LT
Sbjct: 412 TLYQNFKRIKPLLIALPNGEQVTTHHSGTIVFSDDLYLTDVLHVPTFNFNLISISKLTTS 471
Query: 79 FLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSN 138
L + F N C Q+ + MI +KL+ CLY L SS + S H +V+T SN
Sbjct: 472 -LACTLTFYTNHCQIQEPHSLSMIGAAKLKGCLYVLTQSS-KKNFESHHVNVYTGYDDSN 531
Query: 139 TFDIWHNR 147
+WH+R
Sbjct: 532 ---VWHSR 534
BLAST of Moc11g30180 vs. NCBI nr
Match:
KYP64431.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])
HSP 1 Score: 78.2 bits (191), Expect = 6.6e-11
Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 0
Query: 9 DDSANSYMAASL--YQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFH 68
D A ++ SL + + I + + L N S ++ GT++L+ + + +V Y+P F
Sbjct: 13 DTGATDHVCQSLTYFDAFTAIRPIQIKLPNGSAVLAKFSGTIRLSRDFVLYDVLYVPEFK 72
Query: 69 YNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSL 128
YNLISI LTK + +++F D CV QD +T +MI R+ ++NCLY L + VP+
Sbjct: 73 YNLISIPKLTKT-IKCKLIFDDLHCVIQDMTTLKMIGRADVQNCLYVLSQPT-KPQVPNQ 132
Query: 129 HYDVHTSMAVSNT---FDIWHNR 147
H +++ +A + T FD+WH R
Sbjct: 133 HI-INSIIAKNPTVPFFDLWHFR 152
BLAST of Moc11g30180 vs. NCBI nr
Match:
XP_017426279.1 (PREDICTED: uncharacterized protein LOC108334859 [Vigna angularis])
HSP 1 Score: 77.8 bits (190), Expect = 8.6e-11
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 0
Query: 9 DDSANSYMAAS--LYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFH 68
D A+ ++++S LY S I + V L N Y GT+K+ + I+NV Y+P F+
Sbjct: 419 DSGASDHVSSSLNLYSSYKAIDPITVKLPNGQQTIASYSGTIKINDSLSISNVLYLPQFN 478
Query: 69 YNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSL 128
+NLIS+S LT + Q++F DN C QDK + RMI ++ LY L+ S
Sbjct: 479 FNLISVSKLTTVH-NCQLIFLDNQCFIQDKHSKRMIGIVDAQDGLYTLKTS--------- 538
Query: 129 HYDVHTSMAVSNTFDIWHNR 147
++T++ DIWH R
Sbjct: 539 FSSINTTICNKEAIDIWHYR 548
BLAST of Moc11g30180 vs. ExPASy TrEMBL
Match:
A0A6J1CR17 (uncharacterized protein LOC111013441 OS=Momordica charantia OX=3673 GN=LOC111013441 PE=4 SV=1)
HSP 1 Score: 91.7 bits (226), Expect = 2.8e-15
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 0
Query: 11 SANSYMAASLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLI 70
SA+ L+ + KIS V V L NK F VEY G V+L+ + I V YIP F++NLI
Sbjct: 251 SAHICGCRKLFDKIHKISPVHVNLPNKPRFVVEYSGFVRLSDHLSIHGVLYIPEFYFNLI 310
Query: 71 SISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSLHYDV 130
S++ L ++ + + F +++C+ QDKS S+ I++ +L + LY L++ T + S +
Sbjct: 311 SVNVLLRDMPSLSVEFTNDTCIIQDKSISKTIDKGRLCHGLYLLDN---TSECSSTVQSI 370
Query: 131 HTSMAVSNTFDIWHNR 147
S +FD+WHNR
Sbjct: 371 CVSAFTLVSFDVWHNR 383
BLAST of Moc11g30180 vs. ExPASy TrEMBL
Match:
A0A151TBK6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_019027 PE=4 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 0
Query: 9 DDSANSYMAASL--YQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFH 68
D A ++ SL + + I + + L N S ++ GT++L+ + + +V Y+P F
Sbjct: 13 DTGATDHVCQSLTYFDAFTAIRPIQIKLPNGSAVLAKFSGTIRLSRDFVLYDVLYVPEFK 72
Query: 69 YNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSL 128
YNLISI LTK + +++F D CV QD +T +MI R+ ++NCLY L + VP+
Sbjct: 73 YNLISIPKLTKT-IKCKLIFDDLHCVIQDMTTLKMIGRADVQNCLYVLSQPT-KPQVPNQ 132
Query: 129 HYDVHTSMAVSNT---FDIWHNR 147
H +++ +A + T FD+WH R
Sbjct: 133 HI-INSIIAKNPTVPFFDLWHFR 152
BLAST of Moc11g30180 vs. ExPASy TrEMBL
Match:
Q2HT49 (Integrase, catalytic region OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC150777g32v1 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 7.9e-10
Identity = 50/150 (33.33%), Postives = 79/150 (52.67%), Query Frame = 0
Query: 9 DDSANSYMAAS--LYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFH 68
D AN+++ +S + S KI V L NK+ V+Y G V +S +Y+TNV Y PTF+
Sbjct: 393 DSGANNHICSSSLCFTSFYKIKPTNVNLPNKTTVLVQYAGNVSFSSSLYLTNVLYCPTFN 452
Query: 69 YNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSL 128
NLIS+S + K L + F+ +SC+ Q+ ST RMI + + LY L S+ + PS
Sbjct: 453 LNLISVSKMCKS-LSCFVNFSTDSCIIQELSTKRMIGLGENIHGLYRLVVSADSFQSPSH 512
Query: 129 HYDVHTSMAVSNTFD----------IWHNR 147
++ + ++ +N +WH R
Sbjct: 513 RFNNNLFVSCNNVSQSHFIVIPNSALWHYR 541
BLAST of Moc11g30180 vs. ExPASy TrEMBL
Match:
A0A2N9FB24 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11866 PE=3 SV=1)
HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 49/150 (32.67%), Postives = 74/150 (49.33%), Query Frame = 0
Query: 9 DDSANSYMAAS--LYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFH 68
D A +M S + S+ + V+V L N N +V + GT+ LT + ++NV Y+ +F
Sbjct: 356 DTGATDHMVISTQFFTSMTIVHDVIVTLLNGHNVSVTHTGTITLTDTLILSNVLYVSSFD 415
Query: 69 YNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVPSL 128
+NLIS+S LT L + F N C +D +MI K RN LY L+ S+ VP+
Sbjct: 416 FNLISVSKLTSS-LHCCLFFLSNFCFIKDLQLWKMIGLGKQRNGLYILQKSADANYVPAF 475
Query: 129 H----------YDVHTSMAVSNTFDIWHNR 147
Y + + +N+F IWH R
Sbjct: 476 DIPCADFTKVLYSLSSIKQSNNSFHIWHCR 504
BLAST of Moc11g30180 vs. ExPASy TrEMBL
Match:
A0A396GD37 (Putative RNA-directed DNA polymerase OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0334511 PE=4 SV=1)
HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 45/149 (30.20%), Postives = 72/149 (48.32%), Query Frame = 0
Query: 21 YQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFL 80
+ ++ KI ++V N + Y G++ + +Y+ NV ++P FH ++ISIS LTK L
Sbjct: 256 FTTIFKIKPILVSFPNGNLLFASYAGSIHFSENLYLDNVLFLPEFHLSIISISQLTKN-L 315
Query: 81 DVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLTGDVP-SLHYDV--------- 140
+ ++F+ NSC+ QD ST R I +L N LY L + P S+ + V
Sbjct: 316 NCLLIFSSNSCMLQDTSTQRTIGDVELINNLYILNQTPKDHSFPNSVSFSVTTDDSQSAT 375
Query: 141 -------------HTSMAVSNTFDIWHNR 147
H+ + N FD+WH R
Sbjct: 376 ENLNNTSFPSSVNHSISSFHNNFDVWHYR 403
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022143573.1 | 5.8e-15 | 36.76 | uncharacterized protein LOC111013441 [Momordica charantia] | [more] |
XP_019420691.1 | 1.9e-13 | 38.28 | PREDICTED: uncharacterized protein LOC109330875 [Lupinus angustifolius] | [more] |
XP_019438974.1 | 2.1e-12 | 36.72 | PREDICTED: uncharacterized protein LOC109344676 [Lupinus angustifolius] | [more] |
KYP64431.1 | 6.6e-11 | 34.27 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] | [more] |
XP_017426279.1 | 8.6e-11 | 34.29 | PREDICTED: uncharacterized protein LOC108334859 [Vigna angularis] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CR17 | 2.8e-15 | 36.76 | uncharacterized protein LOC111013441 OS=Momordica charantia OX=3673 GN=LOC111013... | [more] |
A0A151TBK6 | 3.2e-11 | 34.27 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... | [more] |
Q2HT49 | 7.9e-10 | 33.33 | Integrase, catalytic region OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC150777g... | [more] |
A0A2N9FB24 | 1.0e-09 | 32.67 | Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... | [more] |
A0A396GD37 | 1.3e-09 | 30.20 | Putative RNA-directed DNA polymerase OS=Medicago truncatula OX=3880 GN=MtrunA17_... | [more] |
Match Name | E-value | Identity | Description | |