Moc11g29590 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g29590
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr11: 21616039 .. 21618787 (+)
RNA-Seq Expression	Moc11g29590
Synteny	Moc11g29590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCACGTATGGTCGTGGATTGGAGGACCATATCACAGATAAAGCAGAATCACCAAAATCTGATGATCCAAAATTTCGCAAATGGAGGGCTGAAAATAATCAAGTAATGAGCTGGTTAATAAACTATATGGCAACCGAAATTGGAGAAAATTTTCTCCTATTTTCTACTGCCAAAGAGATTTGGGAAGCTGTTCGTGATACTTTCTCCAATAAGGAAAACACTGCTGAAATTTTCCAGATAGAGACTACTTTCCAAGATCTCAAACAAGGTGATTTATCTGTTACAACCTATTACTCCACTTTATCTCGCTATTGGCAACAATTAGATCTATTTGAAACTATTGATTGGAAATGCTCTGATAATCGTACTCTCTTTCGAGAATTTGTGGAAACAAAGAGGATTTTCAAATTCCTAATGGGTCTCAATAAATCCCTTGATGAAGTTCGTGGTCGAATTCTCGGAACTAAGCCATTACCTAGTATCCGAGAAGTCTTTTTTGAAGTACGTAGGGAGGAAAGTCGAAAGAAAGTCATGTTGGGATCATCTGAACATCCTCTTACTCAAACTGAATTTGCTCTCATTTCCCAACGAGATCACCCAAATGATCCAATCGCTCTTGCTGCCCGGGGAAACTTCCAATCCTATGGTTACAATCGACAGCACAAAGGGCGACCATGGTGCGATCATTGTCATAAAGTGGGACATGTCAAAGAAACCTGTTGGAAACTACATGGGAAACCAACAAATTGGAAGCCGAACACTACTAGATCGGATCGAGAAACTAAGGGGAATGCTGCTGTATCTGAAACTTCCAATCAACAACCACATGCTAAAGAGTTGTTGAACATGCTGCAACAACTATTACACAAAACAAATCTATCAACAACAGTAGGTGGTTCTGGGAATGTACAGCAAGGTAACAAAAATTCCCTTGCTCTCCATACTCAAACTCTTCCATCTGAATGGATAGTGGACTCTGGAGCATCAGATCATATGACAGGTGATAGATCCTTATTCTCATCCTTTTCACTTTATATGGGAAACCTCTCTGTTCGAATTGCTAACGGTACACCTGCTAAAGTGACCGGTATTGGAAGCATTCAGATATCAAGCTCTCTAATTCTTGAGTCAGTTTTATTTGTGCCAACGTTGGAGTATAATCTGCTATCTGTAAGTAAGTTGAATCGAGACTTGAACTGCGAAACTAAATTCCTTGCAAACTCTTGTATTTTTCAGGACTTGGGATCGGGGAAGATGATTGGCAATGCTGAACTATGTGCTGGATTGTATCTTCTGAGAGCAACTAGTCCTCCACAAACACATGAATGCAATAAACTTGTGGTTCAGTCTAATCGTGAGTCAGCTTATATTTCTGAGTCTTTAAATCATAAAGATAGTCGTATCATGATGTTGCACTATCGTTTTGGTCATCCAAATTTTGCCTATCTCGAGCGTCTGTTTCCTTCTTTATTTATCAATAAAAAGAGTCAATTTTTCAAGTGTGAGATTTGTCAACTCTCCAAACACACACGTGCCCATTATTCACCTAATATTCATTCTCCGTCTCAACCTTTCTCTCCTATCCATGGAGACATTTGTGGACCTTCAAGGGTAAAAAATATCAATGGGGCTCGTTGGTTTCTTCTGTTTGTTGATGATCACACACGTTTGAGTTGGACATTCCTTATGAAAGACAAATCTGAAACTAGCCAATTATTCACAACTTTTCGTAAAATGATCCAAAATTAGTTTCAAGTCAATATCCAAGTACTGAAAACGGACAATGCACGTGACTTTTTCAACTCATCCCTCGGAACATATCTCCAATCTCATGGCATTGTTCACCAACGTTCGTGTGTTGACACACCACAACAAAATGGTGTCGTTGAACGCAAAAATCGTCATCTTCTCGATGTAGCCCGATCCCTAATGCTCACATCACACATTCCAAAATCTTTTTGGGGTGAAGCTGTTCTCACTTCGACCTATCTCATAAACCGATTGCCCTCCCGTATTCTCAAATTCAGCACACCCTTGCAAAGTTTACTTACGACCTATCCTACATCCCATCTGGTCTCCCAACTACCATTAAAAATATTTGGGTGTACTGCATTCGTTCATGTTTATCCTCAGCATCGTAGTAAACTTGATGCGAGATCCATAAAATGTGTCTTCCTTGGATACTCGTCAAATAAAAAAGGATACAAGTGTTATCATCCTCCATCTCAAAAGTTCTTTCATACCATTGATGTCACATTTTTTGAACATCAACCATATTATCCCAATTCTGTAATTCAGAGGGAGCGTTATGATCCTGAATCACAAAATTGGGATTGCACTCCTGATCTTCCTACGGTAACTTTAAATCTATCATCTGAAAGTTCACTTGTACCATCTTCTGAGTCAACTCCCTTATCTACCCCTGAGCCTGAATTGCAAGTCTATTCGCGAAGAGCGAGACAACTTGAGAGGACTGAGATACAACCTACACAAGTTCAGCAAAGCCAAGATCTAAACCAAAATCCTAATGTCCTTGAAATAACACACGACATGTCAGAAGATGATAGACCTATCGCTGTAAGGAAATGTGTTCGCTCATGTACTCAACATCCCATACAATATCACTTATCTTACACTAATTTGTAGCCATGTTTCAAAGCTTTTGTGACTTCACTAGATCAGATACAAATTCCCAACTCAGTTCAAGAAGCTCTACAGAGACCTGAATGGAAAGCTGCCACCCTAG

mRNA sequence

ATGTTCACGTATGGTCGTGGATTGGAGGACCATATCACAGATAAAGCAGAATCACCAAAATCTGATGATCCAAAATTTCGCAAATGGAGGGCTGAAAATAATCAAGTAATGAGCTGGTTAATAAACTATATGGCAACCGAAATTGGAGAAAATTTTCTCCTATTTTCTACTGCCAAAGAGATTTGGGAAGCTGTTCGTGATACTTTCTCCAATAAGGAAAACACTGCTGAAATTTTCCAGATAGAGACTACTTTCCAAGATCTCAAACAAGGTGATTTATCTGTTACAACCTATTACTCCACTTTATCTCGCTATTGGCAACAATTAGATCTATTTGAAACTATTGATTGGAAATGCTCTGATAATCGTACTCTCTTTCGAGAATTTGTGGAAACAAAGAGGATTTTCAAATTCCTAATGGGTCTCAATAAATCCCTTGATGAAGTTCGTGGTCGAATTCTCGGAACTAAGCCATTACCTAGTATCCGAGAAGTCTTTTTTGAAGTACGTAGGGAGGAAAGTCGAAAGAAAGTCATGTTGGGATCATCTGAACATCCTCTTACTCAAACTGAATTTGCTCTCATTTCCCAACGAGATCACCCAAATGATCCAATCGCTCTTGCTGCCCGGGGAAACTTCCAATCCTATGGTTACAATCGACAGCACAAAGGGCGACCATGGTGCGATCATTGTCATAAAGTGGGACATGTCAAAGAAACCTGTTGGAAACTACATGGGAAACCAACAAATTGGAAGCCGAACACTACTAGATCGGATCGAGAAACTAAGGGGAATGCTGCTGTATCTGAAACTTCCAATCAACAACCACATGCTAAAGAGTTGTTGAACATGCTGCAACAACTATTACACAAAACAAATCTATCAACAACAGTAGGTGGTTCTGGGAATGTACAGCAAGGTAACAAAAATTCCCTTGCTCTCCATACTCAAACTCTTCCATCTGAATGGATAGTGGACTCTGGAGCATCAGATCATATGACAGGTGATAGATCCTTATTCTCATCCTTTTCACTTTATATGGGAAACCTCTCTGTTCGAATTGCTAACGGTACACCTGCTAAAGTGACCGGTATTGGAAGCATTCAGATATCAAGCTCTCTAATTCTTGAGTCAGTTTTATTTGTGCCAACGTTGGAGTATAATCTGCTATCTGACTTGGGATCGGGGAAGATGATTGGCAATGCTGAACTATGTGCTGGATTGTATCTTCTGAGAGCAACTAGTCCTCCACAAACACATGAATGCAATAAACTTGTGAGGGAGCGTTATGATCCTGAATCACAAAATTGGGATTGCACTCCTGATCTTCCTACGGTAACTTTAAATCTATCATCTGAAAGTTCACTTGTACCATCTTCTGAGTCAACTCCCTTATCTACCCCTGAGCCTGAATTGCAAGTCTATTCGCGAAGAGCGAGACAACTTGAGAGGACTGAGATACAACCTACACAAGTTCAGCAAAGCCAAGATCTAAACCAAAATCCTAATGTCCTTGAAATAACACACGACATGTCAGAAGATGATAGACCTATCGCTATCAGATACAAATTCCCAACTCAGTTCAAGAAGCTCTACAGAGACCTGAATGGAAAGCTGCCACCCTAG

Coding sequence (CDS)

ATGTTCACGTATGGTCGTGGATTGGAGGACCATATCACAGATAAAGCAGAATCACCAAAATCTGATGATCCAAAATTTCGCAAATGGAGGGCTGAAAATAATCAAGTAATGAGCTGGTTAATAAACTATATGGCAACCGAAATTGGAGAAAATTTTCTCCTATTTTCTACTGCCAAAGAGATTTGGGAAGCTGTTCGTGATACTTTCTCCAATAAGGAAAACACTGCTGAAATTTTCCAGATAGAGACTACTTTCCAAGATCTCAAACAAGGTGATTTATCTGTTACAACCTATTACTCCACTTTATCTCGCTATTGGCAACAATTAGATCTATTTGAAACTATTGATTGGAAATGCTCTGATAATCGTACTCTCTTTCGAGAATTTGTGGAAACAAAGAGGATTTTCAAATTCCTAATGGGTCTCAATAAATCCCTTGATGAAGTTCGTGGTCGAATTCTCGGAACTAAGCCATTACCTAGTATCCGAGAAGTCTTTTTTGAAGTACGTAGGGAGGAAAGTCGAAAGAAAGTCATGTTGGGATCATCTGAACATCCTCTTACTCAAACTGAATTTGCTCTCATTTCCCAACGAGATCACCCAAATGATCCAATCGCTCTTGCTGCCCGGGGAAACTTCCAATCCTATGGTTACAATCGACAGCACAAAGGGCGACCATGGTGCGATCATTGTCATAAAGTGGGACATGTCAAAGAAACCTGTTGGAAACTACATGGGAAACCAACAAATTGGAAGCCGAACACTACTAGATCGGATCGAGAAACTAAGGGGAATGCTGCTGTATCTGAAACTTCCAATCAACAACCACATGCTAAAGAGTTGTTGAACATGCTGCAACAACTATTACACAAAACAAATCTATCAACAACAGTAGGTGGTTCTGGGAATGTACAGCAAGGTAACAAAAATTCCCTTGCTCTCCATACTCAAACTCTTCCATCTGAATGGATAGTGGACTCTGGAGCATCAGATCATATGACAGGTGATAGATCCTTATTCTCATCCTTTTCACTTTATATGGGAAACCTCTCTGTTCGAATTGCTAACGGTACACCTGCTAAAGTGACCGGTATTGGAAGCATTCAGATATCAAGCTCTCTAATTCTTGAGTCAGTTTTATTTGTGCCAACGTTGGAGTATAATCTGCTATCTGACTTGGGATCGGGGAAGATGATTGGCAATGCTGAACTATGTGCTGGATTGTATCTTCTGAGAGCAACTAGTCCTCCACAAACACATGAATGCAATAAACTTGTGAGGGAGCGTTATGATCCTGAATCACAAAATTGGGATTGCACTCCTGATCTTCCTACGGTAACTTTAAATCTATCATCTGAAAGTTCACTTGTACCATCTTCTGAGTCAACTCCCTTATCTACCCCTGAGCCTGAATTGCAAGTCTATTCGCGAAGAGCGAGACAACTTGAGAGGACTGAGATACAACCTACACAAGTTCAGCAAAGCCAAGATCTAAACCAAAATCCTAATGTCCTTGAAATAACACACGACATGTCAGAAGATGATAGACCTATCGCTATCAGATACAAATTCCCAACTCAGTTCAAGAAGCTCTACAGAGACCTGAATGGAAAGCTGCCACCCTAG

Protein sequence

MFTYGRGLEDHITDKAESPKSDDPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKEIWEAVRDTFSNKENTAEIFQIETTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCSDNRTLFREFVETKRIFKFLMGLNKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVMLGSSEHPLTQTEFALISQRDHPNDPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKETCWKLHGKPTNWKPNTTRSDRETKGNAAVSETSNQQPHAKELLNMLQQLLHKTNLSTTVGGSGNVQQGNKNSLALHTQTLPSEWIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIANGTPAKVTGIGSIQISSSLILESVLFVPTLEYNLLSDLGSGKMIGNAELCAGLYLLRATSPPQTHECNKLVRERYDPESQNWDCTPDLPTVTLNLSSESSLVPSSESTPLSTPEPELQVYSRRARQLERTEIQPTQVQQSQDLNQNPNVLEITHDMSEDDRPIAIRYKFPTQFKKLYRDLNGKLPP

Homology

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BLAST of Moc11g29590 vs. NCBI nr
Match: RVX22720.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 415.2 bits (1066), Expect = 8.5e-112
Identity = 216/437 (49.43%), Postives = 285/437 (65.22%), Query Frame = 0


Query: 1   MFTYGRGLEDHITDKAESPKSDDPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKE 60
           +F  G+G ++++T +A  P++ +P FRKW+ ENN +MSWLIN M  +IGENFLLF TAK+
Sbjct: 57  LFICGKGKDEYLTGEAVMPETTEPGFRKWKIENNMIMSWLINSMNNDIGENFLLFGTAKD 116

Query: 61  IWEAVRDTFSNKENTAEIFQIETTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCS 120
           IW+A ++T+S+ ENT+E+FQ+E+   D +QG+ SVT YY+TL+RYWQQLDLFET  WKCS
Sbjct: 117 IWDAAKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTRYWQQLDLFETHSWKCS 176

Query: 121 DNRTLFREFVETKRIFKFLMGLNKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVML 180
           D+   +R+ VE KR+FKF +GLN+ LD+VRGRI+G KPLPS+RE F EVRREESRKKVM+
Sbjct: 177 DDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMGIKPLPSLREAFSEVRREESRKKVMM 236

Query: 181 GSSEHPLTQTEFALISQRDHPNDPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKET 240
           GS E P                D  ALAAR +F S G +RQ + RPWCD+C K GH KET
Sbjct: 237 GSKEQPAPTL------------DASALAAR-SFNSSGGDRQKRDRPWCDYCKKPGHYKET 296

Query: 241 CWKLHGKPTNWKPNTTRSDRETKGNAAVSETSNQ----QPHAKELLNMLQQLLHKTNLST 300
           CWKLHGKP +WKP   R DR+ + + A +  S       P  KE + MLQ+LL +    +
Sbjct: 297 CWKLHGKPADWKPK-PRFDRDGRAHVAANSESTSVPEPSPFNKEQMEMLQKLLSQVGSGS 356

Query: 301 TVGGSGNVQQGNKNSLALHTQTLPSEWIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIAN 360
           T G +    +G               WIVD+GASDHMTGD ++  ++    G+ SV IA+
Sbjct: 357 TTGVAFTANRGGMR-----------PWIVDTGASDHMTGDAAILQNYKPSNGHSSVHIAD 416

Query: 361 GTPAKVTGIGSIQISSSLILESVLFVPTLEYNLLS----------------------DLG 412
           G+ +K+ G GSI+++  L L+SVL VP L+ NLLS                      DL 
Sbjct: 417 GSKSKIAGTGSIKLTKDLYLDSVLHVPNLDCNLLSISKLAHDLQCVTKFYPNLCVFQDLK 468

[Close]

BLAST of Moc11g29590 vs. NCBI nr
Match: RVW65555.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 414.1 bits (1063), Expect = 1.9e-111
Identity = 216/437 (49.43%), Postives = 284/437 (64.99%), Query Frame = 0


Query: 1   MFTYGRGLEDHITDKAESPKSDDPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKE 60
           +F  G+G ++++T +A  P++ +P FRKW+ EN+ +MSWLIN M  +IGENFLLF TAK+
Sbjct: 57  LFICGKGKDEYLTGEAVMPETTEPGFRKWKIENSMIMSWLINSMNNDIGENFLLFGTAKD 116

Query: 61  IWEAVRDTFSNKENTAEIFQIETTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCS 120
           IW+A ++T+S+ ENT E+FQ+E+   D +QG+ SVT YY+TL+RYWQQLDLFET  WKCS
Sbjct: 117 IWDAAKETYSSSENTLELFQVESALHDFRQGEQSVTQYYNTLTRYWQQLDLFETHSWKCS 176

Query: 121 DNRTLFREFVETKRIFKFLMGLNKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVML 180
           D+   +R+ VE KR+FKF +GLN+ LD+VRGRI+G KPLPS+RE F EVRREESRKKVM+
Sbjct: 177 DDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMGIKPLPSLREAFSEVRREESRKKVMM 236

Query: 181 GSSEHPLTQTEFALISQRDHPNDPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKET 240
           GS E P                D  ALAAR +F S G +RQ + RPWCD+C K GH KET
Sbjct: 237 GSKEQPAPTL------------DASALAAR-SFNSSGGDRQKRDRPWCDYCKKPGHYKET 296

Query: 241 CWKLHGKPTNWKPNTTRSDRETKGNAAVSETSNQ----QPHAKELLNMLQQLLHKTNLST 300
           CWKLHGKP +WKP   R DR+ + + A +  S       P  KE + MLQ+LL +    +
Sbjct: 297 CWKLHGKPADWKPK-PRFDRDGRAHVAANSESTSVPEPSPFNKEQMEMLQKLLSQVGSGS 356

Query: 301 TVGGSGNVQQGNKNSLALHTQTLPSEWIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIAN 360
           T G +    QG               WIVD+GASDHMTGD ++  ++    G+ SV IA+
Sbjct: 357 TTGVAFTANQGGMR-----------PWIVDTGASDHMTGDAAILQNYKPSNGHSSVHIAD 416

Query: 361 GTPAKVTGIGSIQISSSLILESVLFVPTLEYNLLS----------------------DLG 412
           G+ +K+ G GSI+++  L L+SVL VP L+ NLLS                      DL 
Sbjct: 417 GSKSKIAGTGSIKLTKDLYLDSVLHVPNLDCNLLSISKLAHDLQCVTKFYPNLCVFQDLK 468

[Close]

BLAST of Moc11g29590 vs. NCBI nr
Match: RVW30563.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 414.1 bits (1063), Expect = 1.9e-111
Identity = 215/435 (49.43%), Postives = 285/435 (65.52%), Query Frame = 0


Query: 1   MFTYGRGLEDHITDKAESPKSDDPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKE 60
           +F  G+G ++++T +A  P++ +P FRKW+ EN+ +MSWLIN M  +IGENFLLF TAK+
Sbjct: 285 LFICGKGKDEYLTGEAVMPETTEPGFRKWKIENSMIMSWLINSMNNDIGENFLLFGTAKD 344

Query: 61  IWEAVRDTFSNKENTAEIFQIETTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCS 120
           IW+A ++T+S+ ENT+E+FQ+E+   D +QG+ SVT YY+TL+RYWQQLDLFET  WKCS
Sbjct: 345 IWDAAKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTRYWQQLDLFETHSWKCS 404

Query: 121 DNRTLFREFVETKRIFKFLMGLNKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVML 180
           D+   +R+ VE KR+FKF +GLN+ LD+VRGRI+G KPLPS+RE F EVRREESRKKVM+
Sbjct: 405 DDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMGIKPLPSLREAFSEVRREESRKKVMM 464

Query: 181 GSSEHPLTQTEFALISQRDHPNDPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKET 240
           GS E P                D  ALAAR +F S G +RQ + RPWCD+C K GH KET
Sbjct: 465 GSKEQPAPTL------------DASALAAR-SFNSSGGDRQKRDRPWCDYCKKPGHYKET 524

Query: 241 CWKLHGKPTNWKPNTTRSDRETKGNAAVSETSNQ----QPHAKELLNMLQQLLHKTNLST 300
           CWKLHGKP +WKP   R DR+ + + A +  S       P  KE + MLQ+LL +    +
Sbjct: 525 CWKLHGKPADWKPK-PRFDRDGRAHVAANSESTSVPEPSPFNKEQMEMLQKLLSQVGSGS 584

Query: 301 TVGGSGNVQQGNKNSLALHTQTLPSEWIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIAN 360
           T G +    +G               WIVD+GASDHMTGD ++  ++    G+ SV IA+
Sbjct: 585 TTGVAFTANRGGMR-----------PWIVDTGASDHMTGDAAILQNYKPSNGHSSVHIAD 644

Query: 361 GTPAKVTGIGSIQISSSLILESVLFVPTLEYNLLS--------------------DLGSG 412
           G+ +K+ G GSI+++  L L+SVL VP L+ NLLS                    DL SG
Sbjct: 645 GSKSKIAGTGSIKLTKDLYLDSVLHVPNLDCNLLSISKLARDLQTKFYPNLCVFQDLKSG 694

[Close]

BLAST of Moc11g29590 vs. NCBI nr
Match: CAN78598.1 (hypothetical protein VITISV_001332 [Vitis vinifera])

HSP 1 Score: 413.3 bits (1061), Expect = 3.2e-111
Identity = 215/437 (49.20%), Postives = 285/437 (65.22%), Query Frame = 0


Query: 1   MFTYGRGLEDHITDKAESPKSDDPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKE 60
           +F  G+G ++++T +A  P++ +P FRKW+ EN+ +MSWLIN M  +IGENFLLF TAK+
Sbjct: 299 LFICGKGKDEYLTGEAVMPETTEPGFRKWKIENSMIMSWLINSMNNDIGENFLLFGTAKD 358

Query: 61  IWEAVRDTFSNKENTAEIFQIETTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCS 120
           IW+A ++T+S+ ENT+E+FQ+E+   D +QG+ SVT YY+TL+RYWQQLDLFET  WKCS
Sbjct: 359 IWDAAKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTRYWQQLDLFETHSWKCS 418

Query: 121 DNRTLFREFVETKRIFKFLMGLNKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVML 180
           D+   +R+ VE KR+FKF +GLN+ LD+VRGRI+G KPLPS+RE F EVRREESRKKVM+
Sbjct: 419 DDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMGIKPLPSLREAFSEVRREESRKKVMM 478

Query: 181 GSSEHPLTQTEFALISQRDHPNDPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKET 240
           GS E P                D  ALAAR +F S G +RQ + RPWCD+C K GH KET
Sbjct: 479 GSKEQPAPTL------------DASALAAR-SFNSSGGDRQKRDRPWCDYCKKPGHYKET 538

Query: 241 CWKLHGKPTNWKPNTTRSDRETKGNAAVSETSNQ----QPHAKELLNMLQQLLHKTNLST 300
           CWKLHGKP +WKP   R DR+ + + A +  S       P  KE + MLQ+LL +    +
Sbjct: 539 CWKLHGKPADWKPK-PRFDRDGRAHVAANSESTSVPEPSPFNKEQMEMLQKLLSQVGSGS 598

Query: 301 TVGGSGNVQQGNKNSLALHTQTLPSEWIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIAN 360
           T G +    +G               WIVD+GASDHMTGD ++  ++    G+ SV IA+
Sbjct: 599 TTGVAFTANRGGMR-----------PWIVDTGASDHMTGDAAILQNYKPSNGHSSVHIAD 658

Query: 361 GTPAKVTGIGSIQISSSLILESVLFVPTLEYNLLS----------------------DLG 412
           G+ +K+ G GSI+++  L L+SVL VP L+ NLLS                      DL 
Sbjct: 659 GSKSKIAGTGSIKLTKDLYLDSVLHVPNLDCNLLSISKLAHDLQCVTKFYPNLCVFQDLK 710

[Close]

BLAST of Moc11g29590 vs. NCBI nr
Match: RVW93334.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 413.3 bits (1061), Expect = 3.2e-111
Identity = 215/437 (49.20%), Postives = 285/437 (65.22%), Query Frame = 0


Query: 1   MFTYGRGLEDHITDKAESPKSDDPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKE 60
           +F  G+G ++++T +A  P++ +P FRKW+ EN+ +MSWLIN M  +IGENFLLF TAK+
Sbjct: 57  LFICGKGKDEYLTGEAVMPETTEPGFRKWKIENSMIMSWLINSMNNDIGENFLLFGTAKD 116

Query: 61  IWEAVRDTFSNKENTAEIFQIETTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCS 120
           IW+A ++T+S+ ENT+E+FQ+E+   D +QG+ SVT YY+TL+RYWQQLDLFET  WKCS
Sbjct: 117 IWDAAKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTRYWQQLDLFETHSWKCS 176

Query: 121 DNRTLFREFVETKRIFKFLMGLNKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVML 180
           D+   +R+ VE KR+FKF +GLN+ LD+VRGRI+G KPLPS+RE F EVRREESRKKVM+
Sbjct: 177 DDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMGIKPLPSLREAFSEVRREESRKKVMM 236

Query: 181 GSSEHPLTQTEFALISQRDHPNDPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKET 240
           GS E P                D  ALAAR +F S G +RQ + RPWCD+C K GH KET
Sbjct: 237 GSKEQPAPTL------------DASALAAR-SFNSSGGDRQKRDRPWCDYCKKPGHYKET 296

Query: 241 CWKLHGKPTNWKPNTTRSDRETKGNAAVSETSNQ----QPHAKELLNMLQQLLHKTNLST 300
           CWKLHGKP +WKP   R DR+ + + A +  S       P  KE + MLQ+LL +    +
Sbjct: 297 CWKLHGKPADWKPK-PRFDRDGRAHVAANSESTSVPEPSPFNKEQMEMLQKLLSQVGSGS 356

Query: 301 TVGGSGNVQQGNKNSLALHTQTLPSEWIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIAN 360
           T G +    +G               WIVD+GASDHMTGD ++  ++    G+ SV IA+
Sbjct: 357 TTGVAFTANRGGMR-----------PWIVDTGASDHMTGDAAILQNYKPSNGHSSVHIAD 416

Query: 361 GTPAKVTGIGSIQISSSLILESVLFVPTLEYNLLS----------------------DLG 412
           G+ +K+ G GSI+++  L L+SVL VP L+ NLLS                      DL 
Sbjct: 417 GSKSKIAGTGSIKLTKDLYLDSVLHVPNLDCNLLSISKLAHDLQCVTKFYPNLCVFQDLK 468

[Close]

BLAST of Moc11g29590 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.1e-11
Identity = 76/372 (20.43%), Postives = 149/372 (40.05%), Query Frame = 0


Query: 23  DPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKEIWEAVRDTFSNKENTAEIFQIE 82
           +P + +W+ ++  + S ++  ++  +       +TA +IWE +R  ++N  +   + Q+ 
Sbjct: 71  NPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYAN-PSYGHVTQLR 130

Query: 83  TTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCSDNRTLFREFVETKRIFKFLMGL 142
           T  +   +G  ++  Y   L   + QL L             L +     +++ + L  L
Sbjct: 131 TQLKQWTKGTKTIDDYMQGLVTRFDQLAL-------------LGKPMDHDEQVERVLENL 190

Query: 143 NKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVMLGSSEHPLTQTEFALISQRDHPN 202
            +    V  +I      P++ E+   +   ES+   +  ++  P+T      +S R+   
Sbjct: 191 PEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSSATVIPITAN---AVSHRNTTT 250

Query: 203 DPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKETCWKLHGKPTNWKPNTTRSDRET 262
                    N +    N  +  +PW                     TN+ PN  +S    
Sbjct: 251 TNNNNNGNRNNRYDNRNNNNNSKPW-----------------QQSSTNFHPNNNQS---- 310

Query: 263 KGNAAVSETSNQQPHAKELLNMLQQLLHKTNLSTTVGGSGNVQQGNKNSLALHTQTLPSE 322
           K      +    Q H+ +  + LQ  L   N           Q   + +LAL +    + 
Sbjct: 311 KPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTPWQP--RANLALGSPYSSNN 370

Query: 323 WIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIANGTPAKVTGIGSIQISSS---LILESV 382
           W++DSGA+ H+T D +  S    Y G   V +A+G+   ++  GS  +S+    L L ++
Sbjct: 371 WLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNI 402

Query: 383 LFVPTLEYNLLS 392
           L+VP +  NL+S
Sbjct: 431 LYVPNIHKNLIS 402

[Close]

BLAST of Moc11g29590 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-07
Identity = 85/383 (22.19%), Postives = 155/383 (40.47%), Query Frame = 0


Query: 17  ESPKSDDPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKEIWEAVRDTFSNKENTA 76
           +S K D  K   W   + +  S +  +++ ++  N +   TA+ IW  +   + +K  T 
Sbjct: 40  DSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTN 99

Query: 77  EIFQIETTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCSDNRTLFREFVETKRIF 136
           +++  +  +            + S  + +   L++F  +  + ++   L  +  E  +  
Sbjct: 100 KLYLKKQLY----------ALHMSEGTNFLSHLNVFNGLITQLAN---LGVKIEEEDKAI 159

Query: 137 KFLMGLNKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVMLGSSEHPLTQTEFALIS 196
             L  L  S D +   IL  K    +++V   +   E  +K      +  +T+      S
Sbjct: 160 LLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGR--S 219

Query: 197 QRDHPNDPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKETCWKLHGKPTNWKPNTT 256
            +   N+     ARG  ++   +R       C +C++ GH K  C           PN  
Sbjct: 220 YQRSSNNYGRSGARGKSKNRSKSRVRN----CYNCNQPGHFKRDC-----------PN-- 279

Query: 257 RSDRETKGNAAVSETSNQQPHAKELLNMLQQLLHKTNLSTTVGGSGNVQQG-NKNSLALH 316
              R+ KG     ETS Q+              +  N +  V  + NV    N+    +H
Sbjct: 280 --PRKGKG-----ETSGQK--------------NDDNTAAMVQNNDNVVLFINEEEECMH 339

Query: 317 TQTLPSEWIVDSGASDHMTGDRSLFSSFSLYMGNL-SVRIANGTPAKVTGIGSI----QI 376
                SEW+VD+ AS H T  R LF  +    G+  +V++ N + +K+ GIG I     +
Sbjct: 340 LSGPESEWVVDTAASHHATPVRDLFCRY--VAGDFGTVKMGNTSYSKIAGIGDICIKTNV 367

Query: 377 SSSLILESVLFVPTLEYNLLSDL 394
             +L+L+ V  VP L  NL+S +
Sbjct: 400 GCTLVLKDVRHVPDLRMNLISGI 367

[Close]

BLAST of Moc11g29590 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-07
Identity = 79/375 (21.07%), Postives = 149/375 (39.73%), Query Frame = 0


Query: 23  DPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKEIWEAVRDTFSNKENTAEIFQIE 82
           +P + +WR ++  + S ++  ++  +       +TA +IWE +R  ++N           
Sbjct: 71  NPDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYAN----------- 130

Query: 83  TTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCSDNRTLFREFVETKRIFKFLMGL 142
            ++  + Q  L   T +  L+   + +D  E ++                    + L  L
Sbjct: 131 PSYGHVTQ--LRFITRFDQLALLGKPMDHDEQVE--------------------RVLENL 190

Query: 143 NKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVMLGSSEHPLTQTEFALISQRDHPN 202
                 V  +I      PS+ E+   +   ES+   +  +   P+T    A +    + N
Sbjct: 191 PDDYKPVIDQIAAKDTPPSLTEIHERLINRESKLLALNSAEVVPIT----ANVVTHRNTN 250

Query: 203 DPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKETCWKLHGKPTNWKPNT--TRSD- 262
                  RG+ ++Y  N                         + +  +W+P++  +RSD 
Sbjct: 251 TNRNQNNRGDNRNYNNN-------------------------NNRSNSWQPSSSGSRSDN 310

Query: 263 RETKGNAAVSETSNQQPHAKELLNMLQQLLHKTNLSTTVGGSGNVQQGNKNSLALHTQTL 322
           R+ K      +  + Q H+ +    L Q    TN   +       Q   + +LA+++   
Sbjct: 311 RQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQP--RANLAVNSPYN 370

Query: 323 PSEWIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIANGTPAKVTGIGSIQI---SSSLIL 382
            + W++DSGA+ H+T D +  S    Y G   V IA+G+   +T  GS  +   S SL L
Sbjct: 371 ANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDL 381

Query: 383 ESVLFVPTLEYNLLS 392
             VL+VP +  NL+S
Sbjct: 431 NKVLYVPNIHKNLIS 381

[Close]

BLAST of Moc11g29590 vs. ExPASy Swiss-Prot
Match: P25601 (Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5B PE=5 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.1e-04
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 309 KNSLALHTQTLP----SEWIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIANGTPAKVTG 368
           K+ L + + T+P    SEWI D+G + HM  DRS+FSSF+       VR   G+   + G
Sbjct: 61  KSWLCMLSSTVPATKSSEWIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGS-IPIMG 120

Query: 369 IGSIQISSSLILESVLFVPTLEYNLLS 392
            G++ I  ++ L  V +VP L  NL+S
Sbjct: 121 SGTVNI-GTVQLHDVSYVPDLPVNLIS 145

[Close]

BLAST of Moc11g29590 vs. ExPASy TrEMBL
Match: A0A438KNE1 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_350 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 4.1e-112
Identity = 216/437 (49.43%), Postives = 285/437 (65.22%), Query Frame = 0


Query: 1   MFTYGRGLEDHITDKAESPKSDDPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKE 60
           +F  G+G ++++T +A  P++ +P FRKW+ ENN +MSWLIN M  +IGENFLLF TAK+
Sbjct: 57  LFICGKGKDEYLTGEAVMPETTEPGFRKWKIENNMIMSWLINSMNNDIGENFLLFGTAKD 116

Query: 61  IWEAVRDTFSNKENTAEIFQIETTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCS 120
           IW+A ++T+S+ ENT+E+FQ+E+   D +QG+ SVT YY+TL+RYWQQLDLFET  WKCS
Sbjct: 117 IWDAAKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTRYWQQLDLFETHSWKCS 176

Query: 121 DNRTLFREFVETKRIFKFLMGLNKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVML 180
           D+   +R+ VE KR+FKF +GLN+ LD+VRGRI+G KPLPS+RE F EVRREESRKKVM+
Sbjct: 177 DDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMGIKPLPSLREAFSEVRREESRKKVMM 236

Query: 181 GSSEHPLTQTEFALISQRDHPNDPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKET 240
           GS E P                D  ALAAR +F S G +RQ + RPWCD+C K GH KET
Sbjct: 237 GSKEQPAPTL------------DASALAAR-SFNSSGGDRQKRDRPWCDYCKKPGHYKET 296

Query: 241 CWKLHGKPTNWKPNTTRSDRETKGNAAVSETSNQ----QPHAKELLNMLQQLLHKTNLST 300
           CWKLHGKP +WKP   R DR+ + + A +  S       P  KE + MLQ+LL +    +
Sbjct: 297 CWKLHGKPADWKPK-PRFDRDGRAHVAANSESTSVPEPSPFNKEQMEMLQKLLSQVGSGS 356

Query: 301 TVGGSGNVQQGNKNSLALHTQTLPSEWIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIAN 360
           T G +    +G               WIVD+GASDHMTGD ++  ++    G+ SV IA+
Sbjct: 357 TTGVAFTANRGGMR-----------PWIVDTGASDHMTGDAAILQNYKPSNGHSSVHIAD 416

Query: 361 GTPAKVTGIGSIQISSSLILESVLFVPTLEYNLLS----------------------DLG 412
           G+ +K+ G GSI+++  L L+SVL VP L+ NLLS                      DL 
Sbjct: 417 GSKSKIAGTGSIKLTKDLYLDSVLHVPNLDCNLLSISKLAHDLQCVTKFYPNLCVFQDLK 468

[Close]

BLAST of Moc11g29590 vs. ExPASy TrEMBL
Match: A0A438D529 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1782 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 9.1e-112
Identity = 215/435 (49.43%), Postives = 285/435 (65.52%), Query Frame = 0


Query: 1   MFTYGRGLEDHITDKAESPKSDDPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKE 60
           +F  G+G ++++T +A  P++ +P FRKW+ EN+ +MSWLIN M  +IGENFLLF TAK+
Sbjct: 285 LFICGKGKDEYLTGEAVMPETTEPGFRKWKIENSMIMSWLINSMNNDIGENFLLFGTAKD 344

Query: 61  IWEAVRDTFSNKENTAEIFQIETTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCS 120
           IW+A ++T+S+ ENT+E+FQ+E+   D +QG+ SVT YY+TL+RYWQQLDLFET  WKCS
Sbjct: 345 IWDAAKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTRYWQQLDLFETHSWKCS 404

Query: 121 DNRTLFREFVETKRIFKFLMGLNKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVML 180
           D+   +R+ VE KR+FKF +GLN+ LD+VRGRI+G KPLPS+RE F EVRREESRKKVM+
Sbjct: 405 DDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMGIKPLPSLREAFSEVRREESRKKVMM 464

Query: 181 GSSEHPLTQTEFALISQRDHPNDPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKET 240
           GS E P                D  ALAAR +F S G +RQ + RPWCD+C K GH KET
Sbjct: 465 GSKEQPAPTL------------DASALAAR-SFNSSGGDRQKRDRPWCDYCKKPGHYKET 524

Query: 241 CWKLHGKPTNWKPNTTRSDRETKGNAAVSETSNQ----QPHAKELLNMLQQLLHKTNLST 300
           CWKLHGKP +WKP   R DR+ + + A +  S       P  KE + MLQ+LL +    +
Sbjct: 525 CWKLHGKPADWKPK-PRFDRDGRAHVAANSESTSVPEPSPFNKEQMEMLQKLLSQVGSGS 584

Query: 301 TVGGSGNVQQGNKNSLALHTQTLPSEWIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIAN 360
           T G +    +G               WIVD+GASDHMTGD ++  ++    G+ SV IA+
Sbjct: 585 TTGVAFTANRGGMR-----------PWIVDTGASDHMTGDAAILQNYKPSNGHSSVHIAD 644

Query: 361 GTPAKVTGIGSIQISSSLILESVLFVPTLEYNLLS--------------------DLGSG 412
           G+ +K+ G GSI+++  L L+SVL VP L+ NLLS                    DL SG
Sbjct: 645 GSKSKIAGTGSIKLTKDLYLDSVLHVPNLDCNLLSISKLARDLQTKFYPNLCVFQDLKSG 694

[Close]

BLAST of Moc11g29590 vs. ExPASy TrEMBL
Match: A0A438G084 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2222 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 9.1e-112
Identity = 216/437 (49.43%), Postives = 284/437 (64.99%), Query Frame = 0


Query: 1   MFTYGRGLEDHITDKAESPKSDDPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKE 60
           +F  G+G ++++T +A  P++ +P FRKW+ EN+ +MSWLIN M  +IGENFLLF TAK+
Sbjct: 57  LFICGKGKDEYLTGEAVMPETTEPGFRKWKIENSMIMSWLINSMNNDIGENFLLFGTAKD 116

Query: 61  IWEAVRDTFSNKENTAEIFQIETTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCS 120
           IW+A ++T+S+ ENT E+FQ+E+   D +QG+ SVT YY+TL+RYWQQLDLFET  WKCS
Sbjct: 117 IWDAAKETYSSSENTLELFQVESALHDFRQGEQSVTQYYNTLTRYWQQLDLFETHSWKCS 176

Query: 121 DNRTLFREFVETKRIFKFLMGLNKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVML 180
           D+   +R+ VE KR+FKF +GLN+ LD+VRGRI+G KPLPS+RE F EVRREESRKKVM+
Sbjct: 177 DDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMGIKPLPSLREAFSEVRREESRKKVMM 236

Query: 181 GSSEHPLTQTEFALISQRDHPNDPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKET 240
           GS E P                D  ALAAR +F S G +RQ + RPWCD+C K GH KET
Sbjct: 237 GSKEQPAPTL------------DASALAAR-SFNSSGGDRQKRDRPWCDYCKKPGHYKET 296

Query: 241 CWKLHGKPTNWKPNTTRSDRETKGNAAVSETSNQ----QPHAKELLNMLQQLLHKTNLST 300
           CWKLHGKP +WKP   R DR+ + + A +  S       P  KE + MLQ+LL +    +
Sbjct: 297 CWKLHGKPADWKPK-PRFDRDGRAHVAANSESTSVPEPSPFNKEQMEMLQKLLSQVGSGS 356

Query: 301 TVGGSGNVQQGNKNSLALHTQTLPSEWIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIAN 360
           T G +    QG               WIVD+GASDHMTGD ++  ++    G+ SV IA+
Sbjct: 357 TTGVAFTANQGGMR-----------PWIVDTGASDHMTGDAAILQNYKPSNGHSSVHIAD 416

Query: 361 GTPAKVTGIGSIQISSSLILESVLFVPTLEYNLLS----------------------DLG 412
           G+ +K+ G GSI+++  L L+SVL VP L+ NLLS                      DL 
Sbjct: 417 GSKSKIAGTGSIKLTKDLYLDSVLHVPNLDCNLLSISKLAHDLQCVTKFYPNLCVFQDLK 468

[Close]

BLAST of Moc11g29590 vs. ExPASy TrEMBL
Match: A0A438CJW1 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_18 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 1.6e-111
Identity = 215/437 (49.20%), Postives = 285/437 (65.22%), Query Frame = 0


Query: 1   MFTYGRGLEDHITDKAESPKSDDPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKE 60
           +F  G+G ++++T +A  P++ +P FRKW+ EN+ +MSWLIN M  +IGENFLLF TAK+
Sbjct: 283 LFICGKGKDEYLTGEAVMPETTEPGFRKWKIENSMIMSWLINSMNNDIGENFLLFGTAKD 342

Query: 61  IWEAVRDTFSNKENTAEIFQIETTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCS 120
           IW+A ++T+S+ ENT+E+FQ+E+   D +QG+ SVT YY+TL+RYWQQLDLFET  WKCS
Sbjct: 343 IWDAAKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTRYWQQLDLFETHSWKCS 402

Query: 121 DNRTLFREFVETKRIFKFLMGLNKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVML 180
           D+   +R+ VE KR+FKF +GLN+ LD+VRGRI+G KPLPS+RE F EVRREESRKKVM+
Sbjct: 403 DDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMGIKPLPSLREAFSEVRREESRKKVMM 462

Query: 181 GSSEHPLTQTEFALISQRDHPNDPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKET 240
           GS E P                D  ALAAR +F S G +RQ + RPWCD+C K GH KET
Sbjct: 463 GSKEQPAPTL------------DASALAAR-SFNSSGGDRQKRDRPWCDYCKKPGHYKET 522

Query: 241 CWKLHGKPTNWKPNTTRSDRETKGNAAVSETSNQ----QPHAKELLNMLQQLLHKTNLST 300
           CWKLHGKP +WKP   R DR+ + + A +  S       P  KE + MLQ+LL +    +
Sbjct: 523 CWKLHGKPADWKPK-PRFDRDGRAHVAANSESTSVPEPSPFNKEQMEMLQKLLSQVGSGS 582

Query: 301 TVGGSGNVQQGNKNSLALHTQTLPSEWIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIAN 360
           T G +    +G               WIVD+GASDHMTGD ++  ++    G+ SV IA+
Sbjct: 583 TTGVAFTANRGGMR-----------PWIVDTGASDHMTGDAAILQNYKPSNGHSSVHIAD 642

Query: 361 GTPAKVTGIGSIQISSSLILESVLFVPTLEYNLLS----------------------DLG 412
           G+ +K+ G GSI+++  L L+SVL VP L+ NLLS                      DL 
Sbjct: 643 GSKSKIAGTGSIKLTKDLYLDSVLHVPNLDCNLLSISKLAHDLQCVTKFYPNLCVFQDLK 694

[Close]

BLAST of Moc11g29590 vs. ExPASy TrEMBL
Match: A0A438ISV9 (Beta-galactosidase OS=Vitis vinifera OX=29760 GN=GIP_352 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 1.6e-111
Identity = 215/437 (49.20%), Postives = 285/437 (65.22%), Query Frame = 0


Query: 1   MFTYGRGLEDHITDKAESPKSDDPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKE 60
           +F  G+G ++++T +A  P++ +P FRKW+ EN+ +MSWLIN M  +IGENFLLF TAK+
Sbjct: 272 LFICGKGKDEYLTGEAVMPETTEPGFRKWKIENSMIMSWLINSMNNDIGENFLLFGTAKD 331

Query: 61  IWEAVRDTFSNKENTAEIFQIETTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETIDWKCS 120
           IW+A ++T+S+ ENT+E+FQ+E+   D +QG+ SVT YY+TL+RYWQQLDLFET  WKCS
Sbjct: 332 IWDAAKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTRYWQQLDLFETHSWKCS 391

Query: 121 DNRTLFREFVETKRIFKFLMGLNKSLDEVRGRILGTKPLPSIREVFFEVRREESRKKVML 180
           D+   +R+ VE KR+FKF +GLN+ LD+VRGRI+G KPLPS+RE F EVRREESRKKVM+
Sbjct: 392 DDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMGIKPLPSLREAFSEVRREESRKKVMM 451

Query: 181 GSSEHPLTQTEFALISQRDHPNDPIALAARGNFQSYGYNRQHKGRPWCDHCHKVGHVKET 240
           GS E P                D  ALAAR +F S G +RQ + RPWCD+C K GH KET
Sbjct: 452 GSKEQPAPTL------------DASALAAR-SFNSSGGDRQKRDRPWCDYCKKPGHYKET 511

Query: 241 CWKLHGKPTNWKPNTTRSDRETKGNAAVSETSNQ----QPHAKELLNMLQQLLHKTNLST 300
           CWKLHGKP +WKP   R DR+ + + A +  S       P  KE + MLQ+LL +    +
Sbjct: 512 CWKLHGKPADWKPK-PRVDRDGRAHVAANSESTSVPEPSPFNKEQMEMLQKLLSQVGSGS 571

Query: 301 TVGGSGNVQQGNKNSLALHTQTLPSEWIVDSGASDHMTGDRSLFSSFSLYMGNLSVRIAN 360
           T G +    +G               WIVD+GASDHMTGD ++  ++    G+ SV IA+
Sbjct: 572 TTGVAFTANRGGMR-----------PWIVDTGASDHMTGDAAILQNYKPSNGHSSVHIAD 631

Query: 361 GTPAKVTGIGSIQISSSLILESVLFVPTLEYNLLS----------------------DLG 412
           G+ +K+ G GSI+++  L L+SVL VP L+ NLLS                      DL 
Sbjct: 632 GSKSKIAGTGSIKLTKDLYLDSVLHVPNLDCNLLSISKLARDLQCVTKFYPNLCVFQDLK 683

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BLAST of Moc11g29590 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 8.7e-14
Identity = 54/168 (32.14%), Postives = 85/168 (50.60%), Query Frame = 0


Query: 19  PKSD--DPKFRKWRAENNQVMSWLINYMATEIGENFLLFSTAKEIWEAVRDTFSNKENTA 78
           PK D   P ++ W   N  VM WL+N M  ++ E+ +   TA ++WE +R  F    +  
Sbjct: 67  PKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVD-L 126

Query: 79  EIFQIETTFQDLKQGDLSVTTYYSTLSRYWQQLDLFETI-DWKCS----DNRTLFREFVE 138
           +I+Q+      L+QG  SV  Y+  LS+ W +L  +  I + KC     +      E  E
Sbjct: 127 KIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEARE 186

Query: 139 TKRIFKFLMG--LNKSLDEVRGRILGTKPLPSIREVFFEVRREESRKK 178
            ++ ++FLMG  LN+  + V  +I+  KP PS+ E F  V+  ES  K
Sbjct: 187 KEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAESMMK 233

The following BLAST results are available for this feature:

BLAST of Moc11g29590 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX22720.1	8.5e-112	49.43	Copia protein [Vitis vinifera]	[more]
RVW65555.1	1.9e-111	49.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW30563.1	1.9e-111	49.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN78598.1	3.2e-111	49.20	hypothetical protein VITISV_001332 [Vitis vinifera]	[more]
RVW93334.1	3.2e-111	49.20	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of Moc11g29590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	5.1e-11	20.43	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	1.2e-07	22.19	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	1.5e-07	21.07	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25601	2.1e-04	37.93	Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Moc11g29590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438KNE1	4.1e-112	49.43	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_350 PE=4 SV=1	[more]
A0A438D529	9.1e-112	49.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438G084	9.1e-112	49.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438CJW1	1.6e-111	49.20	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_18 PE=4 SV=1	[more]
A0A438ISV9	1.6e-111	49.20	Beta-galactosidase OS=Vitis vinifera OX=29760 GN=GIP_352 PE=3 SV=1	[more]

BLAST of Moc11g29590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	8.7e-14	32.14	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 38..143 e-value: 2.4E-8 score: 34.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 452..471
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 452..470
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..25
None	No IPR available	PANTHER	PTHR37610:SF47	SUBFAMILY NOT NAMED	coord: 1..192
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 1..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g29590.1	Moc11g29590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding