Moc11g28530 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g28530
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr11: 20839750 .. 20840046 (-)
RNA-Seq Expression	Moc11g28530
Synteny	Moc11g28530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTGGAGTGAATCGGTCAAGCAGAATCCAAGCATCAACAATTGGTGCCGTCTGTGGGGACGATACAAGATTAAGCCGAGACAGAGCCCAGATCCGAGGAGGGTCGGAATGAAGCGAGTTGATATGAACACTGGGGGAGGTCAAAAGTGTTTCGAAGAAAAGATCCCCGGTGTGGCAGTCGACGACTCAGGAAAAATATGCCCGAGCCCTGGTCATCAACCAAATTCGACCACCTTCGACAGAGGAGAACCTAGTGAAGGGGTGGAATCCATCCCCTTGACATCTGAAGATTGA

mRNA sequence

ATGAGGTGGAGTGAATCGGTCAAGCAGAATCCAAGCATCAACAATTGGTGCCGTCTGTGGGGACGATACAAGATTAAGCCGAGACAGAGCCCAGATCCGAGGAGGGTCGGAATGAAGCGAGTTGATATGAACACTGGGGGAGGTCAAAAGTGTTTCGAAGAAAAGATCCCCGGTGTGGCAGTCGACGACTCAGGAAAAATATGCCCGAGCCCTGGTCATCAACCAAATTCGACCACCTTCGACAGAGGAGAACCTAGTGAAGGGGTGGAATCCATCCCCTTGACATCTGAAGATTGA

Coding sequence (CDS)

ATGAGGTGGAGTGAATCGGTCAAGCAGAATCCAAGCATCAACAATTGGTGCCGTCTGTGGGGACGATACAAGATTAAGCCGAGACAGAGCCCAGATCCGAGGAGGGTCGGAATGAAGCGAGTTGATATGAACACTGGGGGAGGTCAAAAGTGTTTCGAAGAAAAGATCCCCGGTGTGGCAGTCGACGACTCAGGAAAAATATGCCCGAGCCCTGGTCATCAACCAAATTCGACCACCTTCGACAGAGGAGAACCTAGTGAAGGGGTGGAATCCATCCCCTTGACATCTGAAGATTGA

Protein sequence

MRWSESVKQNPSINNWCRLWGRYKIKPRQSPDPRRVGMKRVDMNTGGGQKCFEEKIPGVAVDDSGKICPSPGHQPNSTTFDRGEPSEGVESIPLTSED

Homology

[Close]

BLAST of Moc11g28530 vs. NCBI nr
Match: XP_022158042.1 (uncharacterized protein LOC111024621 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 4.4e-11
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 38 MKRVDMNTGGGQKCFEEKIPGVAVDDSGKICPSPGHQPNSTTFDRGEPSEGVESIPLTSE 97
          MKRVD N   GQ+CFEE+   VA +  G+ICPSP HQPN TTFD+GEP  GVESIPLT  
Sbjct: 1  MKRVDTNP-EGQQCFEEESLEVAANGLGEICPSPDHQPNPTTFDKGEPVGGVESIPLTPG 60

Query: 98 D 99
          D
Sbjct: 61 D 60

[Close]

BLAST of Moc11g28530 vs. NCBI nr
Match: XP_022156571.1 (uncharacterized protein LOC111023448 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 60  AVDDSGKICPSPGHQPNSTTFDRGEPSEGVESIPLTSED 99
           A D SG   PSPGH+ NSTT DRGEP+E VES+PLT+ED
Sbjct: 82  ATDLSGDARPSPGHRLNSTTLDRGEPAEEVESVPLTAED 120

[Close]

BLAST of Moc11g28530 vs. ExPASy TrEMBL
Match: A0A6J1DW49 (uncharacterized protein LOC111024621 OS=Momordica charantia OX=3673 GN=LOC111024621 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 38 MKRVDMNTGGGQKCFEEKIPGVAVDDSGKICPSPGHQPNSTTFDRGEPSEGVESIPLTSE 97
          MKRVD N   GQ+CFEE+   VA +  G+ICPSP HQPN TTFD+GEP  GVESIPLT  
Sbjct: 1  MKRVDTNP-EGQQCFEEESLEVAANGLGEICPSPDHQPNPTTFDKGEPVGGVESIPLTPG 60

Query: 98 D 99
          D
Sbjct: 61 D 60

[Close]

BLAST of Moc11g28530 vs. ExPASy TrEMBL
Match: A0A6J1DVC6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 60  AVDDSGKICPSPGHQPNSTTFDRGEPSEGVESIPLTSED 99
           A D SG   PSPGH+ NSTT DRGEP+E VES+PLT+ED
Sbjct: 82  ATDLSGDARPSPGHRLNSTTLDRGEPAEEVESVPLTAED 120

The following BLAST results are available for this feature:

BLAST of Moc11g28530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158042.1	4.4e-11	65.57	uncharacterized protein LOC111024621 [Momordica charantia]	[more]
XP_022156571.1	1.8e-04	69.23	uncharacterized protein LOC111023448 [Momordica charantia]	[more]

BLAST of Moc11g28530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g28530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DW49	2.2e-11	65.57	uncharacterized protein LOC111024621 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DVC6	8.8e-05	69.23	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1	[more]

BLAST of Moc11g28530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g28530.1	Moc11g28530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity