Moc11g26030 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g26030
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Zf-CCHC domain-containing protein/UBN2 domain-containing protein
Location	chr11: 19087574 .. 19088080 (-)
RNA-Seq Expression	Moc11g26030
Synteny	Moc11g26030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAACTCATTGGTTCGTTGATGACGCATGAGATAAAGATCAAGAAAAACATGGAGGATGAGAAGAAAAATAAAGAAAAGAGTATAGCATTAAAGGCCATCACCTTGGAAGTTGACTCCGAAGGTGAGAATGCCTTTGATGAAGATGATGTGGCCTATTTGTCACGTAAGTATAAAAATTTCATCAAGAGAAAAAAACAATTCAAGAAGCATTTCTCCAACCAAAAAGAGTCAAAATGTGAAAAGAGCAAGGATGAGGTAATTTGTTATGAATGCAAAAAATTGGGTCATATTAGAACCGATTGTCCTTTTCTTAAATCATCTAAGAAATCCAAGAAGAAAGCAATGAAGGATACTTGGGATGATAGTGATGAAAGTGGAAGTGAAAGTGAGAATGAAGAAGTAGCCAACTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAGGTAAATCTTGACCCCATTTCTTATGATGAGTTGTTTAAAGCTTTTGAGAATATGTAA

mRNA sequence

ATGGACGAACTCATTGGTTCGTTGATGACGCATGAGATAAAGATCAAGAAAAACATGGAGGATGAGAAGAAAAATAAAGAAAAGAGTATAGCATTAAAGGCCATCACCTTGGAAGTTGACTCCGAAGGTGAGAATGCCTTTGATGAAGATGATGTGGCCTATTTGTCACGTAAGTATAAAAATTTCATCAAGAGAAAAAAACAATTCAAGAAGCATTTCTCCAACCAAAAAGAGTCAAAATGTGAAAAGAGCAAGGATGAGGTAATTTGTTATGAATGCAAAAAATTGGGTCATATTAGAACCGATTGTCCTTTTCTTAAATCATCTAAGAAATCCAAGAAGAAAGCAATGAAGGATACTTGGGATGATAGTGATGAAAGTGGAAGTGAAAGTGAGAATGAAGAAGTAGCCAACTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAGGTAAATCTTGACCCCATTTCTTATGATGAGTTGTTTAAAGCTTTTGAGAATATGTAA

Coding sequence (CDS)

ATGGACGAACTCATTGGTTCGTTGATGACGCATGAGATAAAGATCAAGAAAAACATGGAGGATGAGAAGAAAAATAAAGAAAAGAGTATAGCATTAAAGGCCATCACCTTGGAAGTTGACTCCGAAGGTGAGAATGCCTTTGATGAAGATGATGTGGCCTATTTGTCACGTAAGTATAAAAATTTCATCAAGAGAAAAAAACAATTCAAGAAGCATTTCTCCAACCAAAAAGAGTCAAAATGTGAAAAGAGCAAGGATGAGGTAATTTGTTATGAATGCAAAAAATTGGGTCATATTAGAACCGATTGTCCTTTTCTTAAATCATCTAAGAAATCCAAGAAGAAAGCAATGAAGGATACTTGGGATGATAGTGATGAAAGTGGAAGTGAAAGTGAGAATGAAGAAGTAGCCAACTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAGGTAAATCTTGACCCCATTTCTTATGATGAGTTGTTTAAAGCTTTTGAGAATATGTAA

Protein sequence

MDELIGSLMTHEIKIKKNMEDEKKNKEKSIALKAITLEVDSEGENAFDEDDVAYLSRKYKNFIKRKKQFKKHFSNQKESKCEKSKDEVICYECKKLGHIRTDCPFLKSSKKSKKKAMKDTWDDSDESGSESENEEVANFCFMAHSDKEDEVNLDPISYDELFKAFENM

Homology

[Close]

BLAST of Moc11g26030 vs. NCBI nr
Match: XP_022157467.1 (uncharacterized protein LOC111024159 [Momordica charantia])

HSP 1 Score: 227.3 bits (578), Expect = 1.0e-55
Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 19  MEDEKKNKEKSIALKAITLEVDSEGENAFDEDDVAYLSRKYKNFIKRKKQFKKHFSNQKE 78
           MEDEKK KEKSIALKAITLEVDS+GENA DEDDVAYLSRKYKNFIKRKKQFKK+FSNQKE
Sbjct: 1   MEDEKKKKEKSIALKAITLEVDSKGENALDEDDVAYLSRKYKNFIKRKKQFKKNFSNQKE 60

Query: 79  SKCEKS-KDEVICYECKKLGHIRTDCPFLKSSKKSKKKAMKDTWDDSDESGSESENEEVA 138
           SK EKS KDEVICY+CKK GHIRTDCP LKSSKKSKKKAMK TWDDSDESGSESENEEV 
Sbjct: 61  SKGEKSKKDEVICYKCKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESGSESENEEVV 120

Query: 139 NFCFMAHSDKEDE 151
           NFCFMAHSDKEDE
Sbjct: 121 NFCFMAHSDKEDE 133

[Close]

BLAST of Moc11g26030 vs. NCBI nr
Match: XP_031741720.1 (uncharacterized protein LOC116403915 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 2.1e-53
Identity = 125/173 (72.25%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 1   MDELIGSLMTHEIKIKKNMEDEKKNKEKSIALKAITLEVDSEGENAFDEDDVAYLSRKYK 60
           ++ELIGSLMTHEI +K+++EDE K K+KSIALK I+LEVD E E+  DEDD+AY SRKYK
Sbjct: 203 LEELIGSLMTHEIIMKEHLEDESK-KKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYK 262

Query: 61  NFIKRKKQFKKHFSNQKESKCEKS-KDEVICYECKKLGHIRTDCPFLKSSKKSKKKAMKD 120
           NFIKRKK FKKH S QKESK EKS KDEVICYECK+ GHIRTDCP LKSSKKSKKKAMK 
Sbjct: 263 NFIKRKKYFKKHLSTQKESKGEKSKKDEVICYECKRSGHIRTDCPLLKSSKKSKKKAMKA 322

Query: 121 TWDDSDESGSESENEEVANFCFMAHSDKEDE----VNLDPISYDELFKAFENM 169
           TWDDS E  SESE EE+AN   MAHSDK+DE    V L+P+S DELF+ FE+M
Sbjct: 323 TWDDSSE--SESEVEEMANLGLMAHSDKDDEHDDKVTLEPLSIDELFENFESM 372

[Close]

BLAST of Moc11g26030 vs. NCBI nr
Match: XP_022158792.1 (uncharacterized protein LOC111025259 [Momordica charantia])

HSP 1 Score: 211.8 bits (538), Expect = 4.4e-51
Identity = 122/178 (68.54%), Postives = 138/178 (77.53%), Query Frame = 0


Query: 3   ELIGSLMTHEIKIKKNMEDEKKNKEKSIA-------LKAITLEVDSEGENAFDEDDVAYL 62
           E +G   ++  K+KK +    K  E  +        LK ++++ +  GENA DEDDVAYL
Sbjct: 25  EGLGKEYSNLEKVKKLLWSLPKQWEPKVTAIQEAKDLKTLSMD-ELIGENALDEDDVAYL 84

Query: 63  SRKYKNFIKRKKQFKKHFSNQKESKCEKS-KDEVICYECKKLGHIRTDCPFLKSSKKSKK 122
           SRKYKNFIKRKKQFKK+FSN KE K E S KDEVICYECKK GHIRTDCPFLKSSKKSKK
Sbjct: 85  SRKYKNFIKRKKQFKKNFSNXKEXKSEXSKKDEVICYECKKPGHIRTDCPFLKSSKKSKK 144

Query: 123 KAMKDTWDDSDESGSESENEEVANFCFMAHSDKE----DEVNLDPISYDELFKAFENM 169
           KAMK TWDDSDESG+ESENEEVANFCFMAHSDKE    DE+ LDP+SYDELF+AFENM
Sbjct: 145 KAMKATWDDSDESGNESENEEVANFCFMAHSDKEDEKDDEITLDPLSYDELFEAFENM 201

[Close]

BLAST of Moc11g26030 vs. NCBI nr
Match: XP_022156978.1 (uncharacterized protein LOC111023806 [Momordica charantia])

HSP 1 Score: 200.7 bits (509), Expect = 1.0e-47
Identity = 117/172 (68.02%), Postives = 120/172 (69.77%), Query Frame = 0


Query: 1   MDELIGSLMTHEIKIKKNMEDEKKNKEKSIALKAITLEVDSEGENAFDEDDVAYLSRKYK 60
           MDELIGSLMTHEIKIKKNMEDEKK K+KSIALKAITLEVD EGEN  DEDDVAYLSRK  
Sbjct: 54  MDELIGSLMTHEIKIKKNMEDEKKKKDKSIALKAITLEVDYEGENTLDEDDVAYLSRK-- 113

Query: 61  NFIKRKKQFKKHFSNQKESKCEKSKDEVICYECKKLGHIRTDCPFLKSSKKSKKKAMKDT 120
                                                   TDCP LKSSKKSKKKAMK T
Sbjct: 114 ----------------------------------------TDCPLLKSSKKSKKKAMKAT 173

Query: 121 WDDSDESGSESENEEVANFCFMAHSDKE----DEVNLDPISYDELFKAFENM 169
           WDDSDESGSESENEEVANFCFMAHSDKE    DEVNLDP+SYDELF+AFENM
Sbjct: 174 WDDSDESGSESENEEVANFCFMAHSDKEDEQDDEVNLDPLSYDELFEAFENM 183

[Close]

BLAST of Moc11g26030 vs. NCBI nr
Match: KAA0046182.1 (zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa] >TYK00208.1 zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 3.3e-46
Identity = 117/173 (67.63%), Postives = 135/173 (78.03%), Query Frame = 0


Query: 1   MDELIGSLMTHEIKIKKNMEDEKKNKEKSIALKAITLEVDSEGENAFDEDDVAYLSRKYK 60
           ++ELIGSLMTHEI +++++EDE K K+KSIAL  I+LE+  E E+  DEDD+ Y SRKYK
Sbjct: 31  LEELIGSLMTHEIIMEEHLEDESK-KKKSIALNTISLEL--EDEDDLDEDDIVYFSRKYK 90

Query: 61  NFIKRKKQFKKHFSNQKESKCEKS-KDEVICYECKKLGHIRTDCPFLKSSKKSKKKAMKD 120
           NFIKRKK FKK+ S QK SK EKS KDEVICYECKKL HIRTDCPFLKSSKKSK+KAMK 
Sbjct: 91  NFIKRKKCFKKYLSTQKVSKGEKSKKDEVICYECKKLAHIRTDCPFLKSSKKSKRKAMKA 150

Query: 121 TWDDSDESGSESENEEVANFCFMAHSDKE----DEVNLDPISYDELFKAFENM 169
           TWDDS E  SESE EE AN   M  SDKE    DEV L+P S +ELF+ FEN+
Sbjct: 151 TWDDSSE--SESEVEETANLGLMVQSDKEDEHDDEVTLEPPSIEELFENFENV 198

[Close]

BLAST of Moc11g26030 vs. ExPASy TrEMBL
Match: A0A6J1DUJ5 (uncharacterized protein LOC111024159 OS=Momordica charantia OX=3673 GN=LOC111024159 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.9e-56
Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 19  MEDEKKNKEKSIALKAITLEVDSEGENAFDEDDVAYLSRKYKNFIKRKKQFKKHFSNQKE 78
           MEDEKK KEKSIALKAITLEVDS+GENA DEDDVAYLSRKYKNFIKRKKQFKK+FSNQKE
Sbjct: 1   MEDEKKKKEKSIALKAITLEVDSKGENALDEDDVAYLSRKYKNFIKRKKQFKKNFSNQKE 60

Query: 79  SKCEKS-KDEVICYECKKLGHIRTDCPFLKSSKKSKKKAMKDTWDDSDESGSESENEEVA 138
           SK EKS KDEVICY+CKK GHIRTDCP LKSSKKSKKKAMK TWDDSDESGSESENEEV 
Sbjct: 61  SKGEKSKKDEVICYKCKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESGSESENEEVV 120

Query: 139 NFCFMAHSDKEDE 151
           NFCFMAHSDKEDE
Sbjct: 121 NFCFMAHSDKEDE 133

[Close]

BLAST of Moc11g26030 vs. ExPASy TrEMBL
Match: A0A6J1DY46 (uncharacterized protein LOC111025259 OS=Momordica charantia OX=3673 GN=LOC111025259 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.1e-51
Identity = 122/178 (68.54%), Postives = 138/178 (77.53%), Query Frame = 0


Query: 3   ELIGSLMTHEIKIKKNMEDEKKNKEKSIA-------LKAITLEVDSEGENAFDEDDVAYL 62
           E +G   ++  K+KK +    K  E  +        LK ++++ +  GENA DEDDVAYL
Sbjct: 25  EGLGKEYSNLEKVKKLLWSLPKQWEPKVTAIQEAKDLKTLSMD-ELIGENALDEDDVAYL 84

Query: 63  SRKYKNFIKRKKQFKKHFSNQKESKCEKS-KDEVICYECKKLGHIRTDCPFLKSSKKSKK 122
           SRKYKNFIKRKKQFKK+FSN KE K E S KDEVICYECKK GHIRTDCPFLKSSKKSKK
Sbjct: 85  SRKYKNFIKRKKQFKKNFSNXKEXKSEXSKKDEVICYECKKPGHIRTDCPFLKSSKKSKK 144

Query: 123 KAMKDTWDDSDESGSESENEEVANFCFMAHSDKE----DEVNLDPISYDELFKAFENM 169
           KAMK TWDDSDESG+ESENEEVANFCFMAHSDKE    DE+ LDP+SYDELF+AFENM
Sbjct: 145 KAMKATWDDSDESGNESENEEVANFCFMAHSDKEDEKDDEITLDPLSYDELFEAFENM 201

[Close]

BLAST of Moc11g26030 vs. ExPASy TrEMBL
Match: A0A6J1DS74 (uncharacterized protein LOC111023806 OS=Momordica charantia OX=3673 GN=LOC111023806 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.9e-48
Identity = 117/172 (68.02%), Postives = 120/172 (69.77%), Query Frame = 0


Query: 1   MDELIGSLMTHEIKIKKNMEDEKKNKEKSIALKAITLEVDSEGENAFDEDDVAYLSRKYK 60
           MDELIGSLMTHEIKIKKNMEDEKK K+KSIALKAITLEVD EGEN  DEDDVAYLSRK  
Sbjct: 54  MDELIGSLMTHEIKIKKNMEDEKKKKDKSIALKAITLEVDYEGENTLDEDDVAYLSRK-- 113

Query: 61  NFIKRKKQFKKHFSNQKESKCEKSKDEVICYECKKLGHIRTDCPFLKSSKKSKKKAMKDT 120
                                                   TDCP LKSSKKSKKKAMK T
Sbjct: 114 ----------------------------------------TDCPLLKSSKKSKKKAMKAT 173

Query: 121 WDDSDESGSESENEEVANFCFMAHSDKE----DEVNLDPISYDELFKAFENM 169
           WDDSDESGSESENEEVANFCFMAHSDKE    DEVNLDP+SYDELF+AFENM
Sbjct: 174 WDDSDESGSESENEEVANFCFMAHSDKEDEQDDEVNLDPLSYDELFEAFENM 183

[Close]

BLAST of Moc11g26030 vs. ExPASy TrEMBL
Match: A0A5A7TRZ7 (Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1333G00310 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.6e-46
Identity = 117/173 (67.63%), Postives = 135/173 (78.03%), Query Frame = 0


Query: 1   MDELIGSLMTHEIKIKKNMEDEKKNKEKSIALKAITLEVDSEGENAFDEDDVAYLSRKYK 60
           ++ELIGSLMTHEI +++++EDE K K+KSIAL  I+LE+  E E+  DEDD+ Y SRKYK
Sbjct: 31  LEELIGSLMTHEIIMEEHLEDESK-KKKSIALNTISLEL--EDEDDLDEDDIVYFSRKYK 90

Query: 61  NFIKRKKQFKKHFSNQKESKCEKS-KDEVICYECKKLGHIRTDCPFLKSSKKSKKKAMKD 120
           NFIKRKK FKK+ S QK SK EKS KDEVICYECKKL HIRTDCPFLKSSKKSK+KAMK 
Sbjct: 91  NFIKRKKCFKKYLSTQKVSKGEKSKKDEVICYECKKLAHIRTDCPFLKSSKKSKRKAMKA 150

Query: 121 TWDDSDESGSESENEEVANFCFMAHSDKE----DEVNLDPISYDELFKAFENM 169
           TWDDS E  SESE EE AN   M  SDKE    DEV L+P S +ELF+ FEN+
Sbjct: 151 TWDDSSE--SESEVEETANLGLMVQSDKEDEHDDEVTLEPPSIEELFENFENV 198

[Close]

BLAST of Moc11g26030 vs. ExPASy TrEMBL
Match: A0A5A7TZF4 (Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00480 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.3e-45
Identity = 110/151 (72.85%), Postives = 123/151 (81.46%), Query Frame = 0


Query: 1   MDELIGSLMTHEIKIKKNMEDEKKNKEKSIALKAITLEVDSEGENAFDEDDVAYLSRKYK 60
           ++ELIGSLMTHEI + +++EDE K K+KSIALK I+LEVD E E+  D+DD+ YLSRKYK
Sbjct: 14  LEELIGSLMTHEIIMTEHLEDESK-KKKSIALKTISLEVDPEDEDDLDQDDITYLSRKYK 73

Query: 61  NFIKRKKQFKKHFSNQKESKCEKS-KDEVICYECKKLGHIRTDCPFLKSSKKSKKKAMKD 120
           NFIKRKK FKKH S QKESK EKS KDEVICYECKK  HIRTDCP LKSSKKSKKKAMK 
Sbjct: 74  NFIKRKKYFKKHLSTQKESKGEKSKKDEVICYECKKSNHIRTDCPLLKSSKKSKKKAMKA 133

Query: 121 TWDDSDESGSESENEEVANFCFMAHSDKEDE 151
           TWDDS E  SESE E++     MAHSDKEDE
Sbjct: 134 TWDDSSE--SESEVEKMTRLGLMAHSDKEDE 161

The following BLAST results are available for this feature:

BLAST of Moc11g26030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157467.1	1.0e-55	91.73	uncharacterized protein LOC111024159 [Momordica charantia]	[more]
XP_031741720.1	2.1e-53	72.25	uncharacterized protein LOC116403915 [Cucumis sativus]	[more]
XP_022158792.1	4.4e-51	68.54	uncharacterized protein LOC111025259 [Momordica charantia]	[more]
XP_022156978.1	1.0e-47	68.02	uncharacterized protein LOC111023806 [Momordica charantia]	[more]
KAA0046182.1	3.3e-46	67.63	zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo v...	[more]

BLAST of Moc11g26030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g26030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUJ5	4.9e-56	91.73	uncharacterized protein LOC111024159 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DY46	2.1e-51	68.54	uncharacterized protein LOC111025259 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DS74	4.9e-48	68.02	uncharacterized protein LOC111023806 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5A7TRZ7	1.6e-46	67.63	Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo...	[more]
A0A5A7TZF4	1.3e-45	72.85	Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo...	[more]

BLAST of Moc11g26030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.60.10		coord: 43..124 e-value: 1.9E-5 score: 26.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..124
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 89..104 e-value: 1.4E-4 score: 21.8
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 90..104 score: 9.619753
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 77..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g26030.1	Moc11g26030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding