Moc11g15880 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g15880
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	50S ribosomal protein L21
Location	chr11: 12155673 .. 12159072 (+)
RNA-Seq Expression	Moc11g15880
Synteny	Moc11g15880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTCTAACTCTTTCCCTCTGCGCAACTTTCGCCACTCATTGCCGAATCTCCAGCAAGCAGAATCTACCTTCATCAACCCCAATTTTCCCCTCCAATTCCCACCACGATTCGTTCAATCTCGCCCTTTCTTGTTCATCATCTTCCCATCCTTCTTCCCGTGCACCATTGCCCTTCGTCCTCAGGTCTTCGGAGTCTGAAGCCGCGGTTATCGAGTCTGAGCCAGCCGCTTCCCAAATCGTTGAAGTCCCCCCGGAACAGGCCCCTAAGCGCGAGGAAATCTTTGCAGTAGTTATGGTTAGTGTTCAATTTCACTAACTAGTAGCGTTTATGATTTCGGTTCCTCATTTCCCTTCAAGTTAAAAGAAACGTATGGTGGGATTTGGATTTGGATTTGCCTAAAATGGTGGATTAATCTGTTGCCATTCGTACGGGATTTTTGTTGTTCATTCTGTAGATTGGATCCCGTCAATATATAGTCTTTCCAGGGCGTTATATACATACCCAGAGGCTGAAAGGGGCTAACGTCAATGATAAGGTGGGCTTCCTTAATATCCTTCTCGTTACATGTTGGTTATATGAGTATCTTAGTGTGATTGTTGTCTTAAAGAGTTTAGAGTGTTATTGAATTGTTTGCATTTTAAGGTAACATTATCGTGTTGAGCAGTCATTTGCATTGTTTAGTTTACCTAAGGAACTGATTTTAGAAATTGGTTGGGAGATTTGAGGTGCTATTTGGGTGAAAGCCTCATCTCATATTCTGATGTATTTCTCCTGTCAAAGTGACAGAGTTGCCATTTTGGAACAATTCTATGGTATCTTTGTTCATGTCTTTGTACTTCAGCGAAGACCTACTTTATACTAATTACTTGTACCGTTATGTTCTTATAAAAAAAAAATTACTTGTACCATTATGGACATGAGGACATGTCACCATAACAAAGGGTCTGTCACTGTTGGATTACTTTTTGTCCTCCATGGTTCTAAGCTTGATTTTGTTAGTGAAAATTGGTTTTAGCGTGTGTAAAAATGTAATATGGAGCTTGTATTAGCGTGCTTGAATTAGATTGTTTGAGCAAGAAGCGTCTTCTGAACCATTTGACTTCCATGAGAGGTTTGACACATGGAAACCTCGATTTGGCGAACTGCATAGAAGAACCATATGACTTTTAATTTTAGGTAAACTTGAGAATTTGAAGTAGTGCTGCTTCATATTATTACTTGATTGGTGTTGCTGCTTGGCATCAAAGCATGCTATCTGTTGGATAAAGGCGAGATGAGAAGAGAATCAATTAGAGGGACATCCTGTGAGTGAGCAATAGAGGCTAAGAGCGAGAGAATGTTGTTAGGTTTTAAAGAAAGGTCAAGATAGTCTAGAAAAGTTGTTCTCTTGATGTCTTTTGGGGAGGGTTTCCTCAACCCTCTGCCTCTAGGTTGTTTTGACCATCTTTTTGGGTCCTTTTCTTATGCATTTCTATGTTTCCTATAAAAAAAAAAAGTTGTTCTCTTGGCCTAGGGGCAGTGTCTTGGGCCAGAGACAGCTTGGCAGGAGAGCTTCTATGTAGACTAATTTTTTCCTTTTTAGAAAGATATACATATACTCAGCTCTGATTCTGTAATAGATTTCATAGAATGATTGGAGTATTTTTGTCAGATTTCTTCGGATGACCTCTTTATGATCAATTGATCATGAATCTCGAGACATATCTATTATTCTTCTCTTGTGATGAAGAGTTTGTCCTTTCCCTAACTTTAGCAATTTTCACATGTTCATTCATGGATGGAGTCTCAAGCGTTCTGACCTTTCCTTGTAGTTGTATGTTTCTTCTCGCTTATTTGTTGATCTTCAGCTATCCTAGTTCCCATTTCTTCGCCTTGCTTTAGAAGGCTAAAATCTCAGAGAAGTTTAGGTTTTTCTCCTAGTTGATCATTTTGGAAGGATAAACACCATGGACTTTGTCCAAAGATCTAGTTGTGTCTGTTATACAATAAGGTAGCAGAAGCTTTGGATCATGTATCATGAAGGTGTCACTTTATTACGAAAGTTTGTAATAGTTTTCTTGAAACCTTTTGTGTTTGTTTGGCTTCTTCTAGAGGTTGTTGGAGCGTCACAAAAGGAGGTGCTCATTAATCCTCCTTTGCATAATTGTGTGGGGTTCTTTGGAATGTCGGAGGAGGTTTGGATTGTGACTGACTTCAATGTTTTTCTTTTGGTATTTTCTACGTTTTCTTTTTCTTGAAAAAGGACGAAGTCAATACCATGGATCGTATTCAGAGGATGTCTTCCTTTTGCCTGGGCCTGCAATGGTGTGTTCTGTGTAGAAGTGCCTTGGATGATTGTTGTGGACCTGTCAGTTCGCGCAGGATTTATGGCTTCGATTCTTTAGACGTTTTGGGATTGTTTGAGTCTATTGTAGGGCGATGATGGAGGAAGCGTTGTTATTCCCTCCTTTTTGTGACAGAGGTCGTTTTCTTTGGCAAGTGTGTTTTCTGGCTACGTTATGGGGTATCTGGCTGGAGAGGAACAATAGGCTGTTTAGGGGGGTGGAGAAAACTGTGAATTATGTTTGGGACCTCATTAGGTTTAAAAATTATATTTTAATTTTAATAAACATGTCCTTGTTGTGTCATTGTCCTAAATTTTTAGAAAATGATGTGTCATATCTGGGTCTTGTGTCCGATCTATGTTTCTTAGGTTTTTACGTTCCACATACGATGACTGCCATCATATTTGACAAACTAACAAATATCAGTTTTACTATGTGATTACAGACGGATCTTCTTTCATGTATAAATGTGAACCAAACCCCTCTATCATCAATGCATTATGAGATACTGTGACCATCTTAAAGTTGTTTAAATTTGTGATTGTGCAGATAACTCTGAATAAGGTTTTGCTTGTGGGAACAAAAACTCACACTTACATTGGAAAGCCAGTGGTGACAAATGCTGCTGTTCATGCTATAGTGGAGGAACAGGTAGTGCATCAATTTTTGAGCAATGCTTCTTTTCTTAGATTTTCTTATTGTTTATGTTTCGCTCTTCCTAATTTCTCACTTGATTCTTTTATTTAGGGATTAGATGACAAAGTAATTGTCTTCAAGTACAAGAAAAAGAAAAACTACCGAAGAAACATCGGTCATCGTCAGGTATTTCTCGGTCCTCGCCTCTCTCTCTCTGTCGTGTCATTCAATTTCTTCCATAGTTTGTTTCTGCACTGATTTAGAGATGATAGGAATGATTGATGTGCATGAGTCTAGAAAATGCTCTGAATACGGGTTTCGTCTTTGTAATTTCTGAATCTGTTTTAACCCGAATGGTGCAGCCGAATACGCGAATAAGGATAACGGAAATCTCTGGATATCAAGACTATCCAGCAGCCACACTTGAGTCGTAG

mRNA sequence

ATGGCGTCTCTAACTCTTTCCCTCTGCGCAACTTTCGCCACTCATTGCCGAATCTCCAGCAAGCAGAATCTACCTTCATCAACCCCAATTTTCCCCTCCAATTCCCACCACGATTCGTTCAATCTCGCCCTTTCTTGTTCATCATCTTCCCATCCTTCTTCCCGTGCACCATTGCCCTTCGTCCTCAGGTCTTCGGAGTCTGAAGCCGCGGTTATCGAGTCTGAGCCAGCCGCTTCCCAAATCGTTGAAGTCCCCCCGGAACAGGCCCCTAAGCGCGAGGAAATCTTTGCAGTAGTTATGATTGGATCCCGTCAATATATAGTCTTTCCAGGGCGTTATATACATACCCAGAGGCTGAAAGGGGCTAACGTCAATGATAAGATAACTCTGAATAAGGTTTTGCTTGTGGGAACAAAAACTCACACTTACATTGGAAAGCCAGTGGTGACAAATGCTGCTGTTCATGCTATAGTGGAGGAACAGGGATTAGATGACAAAGTAATTGTCTTCAAGTACAAGAAAAAGAAAAACTACCGAAGAAACATCGGTCATCGTCAGCCGAATACGCGAATAAGGATAACGGAAATCTCTGGATATCAAGACTATCCAGCAGCCACACTTGAGTCGTAG

Coding sequence (CDS)

ATGGCGTCTCTAACTCTTTCCCTCTGCGCAACTTTCGCCACTCATTGCCGAATCTCCAGCAAGCAGAATCTACCTTCATCAACCCCAATTTTCCCCTCCAATTCCCACCACGATTCGTTCAATCTCGCCCTTTCTTGTTCATCATCTTCCCATCCTTCTTCCCGTGCACCATTGCCCTTCGTCCTCAGGTCTTCGGAGTCTGAAGCCGCGGTTATCGAGTCTGAGCCAGCCGCTTCCCAAATCGTTGAAGTCCCCCCGGAACAGGCCCCTAAGCGCGAGGAAATCTTTGCAGTAGTTATGATTGGATCCCGTCAATATATAGTCTTTCCAGGGCGTTATATACATACCCAGAGGCTGAAAGGGGCTAACGTCAATGATAAGATAACTCTGAATAAGGTTTTGCTTGTGGGAACAAAAACTCACACTTACATTGGAAAGCCAGTGGTGACAAATGCTGCTGTTCATGCTATAGTGGAGGAACAGGGATTAGATGACAAAGTAATTGTCTTCAAGTACAAGAAAAAGAAAAACTACCGAAGAAACATCGGTCATCGTCAGCCGAATACGCGAATAAGGATAACGGAAATCTCTGGATATCAAGACTATCCAGCAGCCACACTTGAGTCGTAG

Protein sequence

MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSHPSSRAPLPFVLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES

Homology

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BLAST of Moc11g15880 vs. NCBI nr
Match: XP_022143625.1 (50S ribosomal protein L21, chloroplastic [Momordica charantia])

HSP 1 Score: 402.1 bits (1032), Expect = 2.9e-108
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSHPSSRAPLPF 60
           MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSHPSSRAPLPF
Sbjct: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSHPSSRAPLPF 60

Query: 61  VLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK 120
           VLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK
Sbjct: 61  VLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK 120

Query: 121 GANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYKKKKNYRR 180
           GANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYKKKKNYRR
Sbjct: 121 GANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYKKKKNYRR 180

Query: 181 NIGHRQPNTRIRITEISGYQDYPAATLES 210
           NIGHRQPNTRIRITEISGYQDYPAATLES
Sbjct: 181 NIGHRQPNTRIRITEISGYQDYPAATLES 209

[Close]

BLAST of Moc11g15880 vs. NCBI nr
Match: XP_038899803.1 (50S ribosomal protein L21, chloroplastic [Benincasa hispida])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 185/212 (87.26%), Postives = 193/212 (91.04%), Query Frame = 0


Query: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSH---PSSRAP 60
           MASLTLSLCA F+THCRIS+K NLPSSTPIFPSNSHH SFN  LS S SS    PSSR  
Sbjct: 1   MASLTLSLCANFSTHCRISTKHNLPSSTPIFPSNSHHHSFNFELSSSFSSSFSIPSSRPA 60

Query: 61  LPFVLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQ 120
             F+L+SSESEAAVI+SEPAASQ +E+P EQAPKREEIFAVVMIGSRQYIVFPGRYIHTQ
Sbjct: 61  FSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQ 120

Query: 121 RLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYKKKKN 180
           RLKGANVNDKITLNKVLLVGTKT TYIGKPVVTNAAVHA+VEEQGLDDKVIVFKYKKKKN
Sbjct: 121 RLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKKN 180

Query: 181 YRRNIGHRQPNTRIRITEISGYQDYPAATLES 210
           YRRNIGHRQPNTRIRITEISGYQDYPA TLES
Sbjct: 181 YRRNIGHRQPNTRIRITEISGYQDYPATTLES 212

[Close]

BLAST of Moc11g15880 vs. NCBI nr
Match: XP_022981606.1 (50S ribosomal protein L21, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 345.1 bits (884), Expect = 4.2e-91
Identity = 183/216 (84.72%), Postives = 195/216 (90.28%), Query Frame = 0


Query: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSH-------PS 60
           MASLTLSLC+ FA+HCR+S+KQN PSSTP FPSNSH+DSFN ALS SSSSH        S
Sbjct: 1   MASLTLSLCSHFASHCRVSTKQNFPSSTPNFPSNSHYDSFNFALSTSSSSHKLSSSSVTS 60

Query: 61  SRAPLPFVLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRY 120
           S + LPF+L+SSESEAAVIESE AASQ VEVP E+APKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SHSALPFLLKSSESEAAVIESELAASQTVEVPSEEAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT  YIGKP+VTNAAVHA+VEEQGLD KVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTEAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 210
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPA+TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPASTLES 216

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BLAST of Moc11g15880 vs. NCBI nr
Match: XP_022926213.1 (50S ribosomal protein L21, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 344.7 bits (883), Expect = 5.4e-91
Identity = 183/216 (84.72%), Postives = 195/216 (90.28%), Query Frame = 0


Query: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSH-------PS 60
           MASLTLSLC+ FA+HCR+S+KQN PSSTP FPSNS +DSFN ALS SSSSH        S
Sbjct: 1   MASLTLSLCSHFASHCRLSTKQNFPSSTPNFPSNSPYDSFNFALSTSSSSHKLSSSSVTS 60

Query: 61  SRAPLPFVLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRY 120
           S + LPF+L+SSESEAAVIESEPAASQ VEVP E+APKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SHSALPFLLKSSESEAAVIESEPAASQTVEVPSEEAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT  YIGKP+VTNAAVHA+VEEQGLD KVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTEAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 210
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPA+TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPASTLES 216

[Close]

BLAST of Moc11g15880 vs. NCBI nr
Match: KAG6607629.1 (50S ribosomal protein L21, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037229.1 50S ribosomal protein L21, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.4 bits (877), Expect = 2.7e-90
Identity = 181/216 (83.80%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSH-------PS 60
           MASLTL+LC+ FA+HCR+S+K N PSSTP FPSNSH+DSFN ALS SSSS         S
Sbjct: 1   MASLTLTLCSHFASHCRLSTKHNFPSSTPNFPSNSHYDSFNFALSTSSSSRKLSSSSVTS 60

Query: 61  SRAPLPFVLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRY 120
           S + LPF+L+SSESEAAVIESEPAASQ VEVP E+APKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SHSALPFLLKSSESEAAVIESEPAASQTVEVPSEEAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT  YIGKP+VTNAAVHA+VEEQGLD KVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTEAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 210
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPA+TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPASTLES 216

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BLAST of Moc11g15880 vs. ExPASy Swiss-Prot
Match: P51412 (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-55
Identity = 127/214 (59.35%), Postives = 157/214 (73.36%), Query Frame = 0


Query: 2   ASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSHPS--SRAPLP 61
           +S TLSLC+TF+ HC ++S++    S+ I  S S   S NLA   +    PS  S +   
Sbjct: 4   SSATLSLCSTFSAHCNVNSRR----SSTILCSLS-KPSLNLAKPLTGFLSPSTASTSRTA 63

Query: 62  FVLRSSESEAAVIESEP--------AASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPG 121
           F +    +E +V+E+EP          S + EV  E+A KREEIFAV+M+G RQYIVFPG
Sbjct: 64  FTVAPKFAE-SVVEAEPETTDIEAVVVSDVSEVTEEKA-KREEIFAVIMVGGRQYIVFPG 123

Query: 122 RYIHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFK 181
           RY++TQRLK ANV+D+I LNKVLLVGTKTHTYIGKPVVTNA VHA+VE QGL+DKV+VFK
Sbjct: 124 RYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFK 183

Query: 182 YKKKKNYRRNIGHRQPNTRIRITEISGYQDYPAA 206
           YK KK YRRNIGHRQPNTRIRIT I+GY++YPA+
Sbjct: 184 YKPKKKYRRNIGHRQPNTRIRITGITGYEEYPAS 210

[Close]

BLAST of Moc11g15880 vs. ExPASy Swiss-Prot
Match: P24613 (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.4e-51
Identity = 100/120 (83.33%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 90  PKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVV 149
           P REEIFAVV+IGSRQYIV PGR+I+TQRLKGA VNDKI LNKVLLVGTK  TYIG P+V
Sbjct: 118 PPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIV 177

Query: 150 TNAAVHAIVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 209
           TNAAVHA+VEEQ LDDKVIVFKYKKKKNYRRNIGHRQP TRI+IT I+GY+DYPA+TLE+
Sbjct: 178 TNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEA 237

[Close]

BLAST of Moc11g15880 vs. ExPASy Swiss-Prot
Match: Q8L9A0 (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL21M PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-26
Identity = 56/108 (51.85%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 93  EEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNA 152
           E +FA+V IGS Q+ V  G  I T++LK  ++NDK+ L KVLL+G+ + T IG+P++ +A
Sbjct: 138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDA 197

Query: 153 AVHAIVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQ 201
            VHA+VEE  LD+KV++FK K++KNYRR  GHRQ  T++RIT+I G +
Sbjct: 198 TVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245

[Close]

BLAST of Moc11g15880 vs. ExPASy Swiss-Prot
Match: B8E0B4 (50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain DSM 6724 / Z-1310) OX=515635 GN=rplU PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 95  IFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAV 154
           +F VV  G +QY V  G  ++ ++LK ANV D++ L+KVLLVG +    IG+P V  A V
Sbjct: 1   MFVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKV 60

Query: 155 HAIVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEI 197
            A V  Q    KVIVFK+K+KK+YRR  GHRQP T++ I EI
Sbjct: 61  IAKVVRQDKYPKVIVFKFKRKKHYRRKYGHRQPYTQLSIKEI 101

[Close]

BLAST of Moc11g15880 vs. ExPASy Swiss-Prot
Match: A0LPF7 (50S ribosomal protein L21 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) OX=335543 GN=rplU PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.1e-17
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 95  IFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAV 154
           ++AV+  G RQY V PG+ +  ++L G  V DK+TL++VLL    T   +G+PV+ N AV
Sbjct: 1   MYAVLKSGGRQYEVRPGQVVKVEKLLG-EVGDKVTLDQVLLFSDGTDIQVGQPVLANIAV 60

Query: 155 HAIVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEI 197
              + EQG   K+++FK+K++K+YR+  GHRQ  T +R+ EI
Sbjct: 61  QGQIVEQGRHRKIVIFKHKRRKDYRKKQGHRQHYTAVRVEEI 101

[Close]

BLAST of Moc11g15880 vs. ExPASy TrEMBL
Match: A0A6J1CPA7 (50S ribosomal protein L21, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013483 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.4e-108
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSHPSSRAPLPF 60
           MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSHPSSRAPLPF
Sbjct: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSHPSSRAPLPF 60

Query: 61  VLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK 120
           VLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK
Sbjct: 61  VLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK 120

Query: 121 GANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYKKKKNYRR 180
           GANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYKKKKNYRR
Sbjct: 121 GANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYKKKKNYRR 180

Query: 181 NIGHRQPNTRIRITEISGYQDYPAATLES 210
           NIGHRQPNTRIRITEISGYQDYPAATLES
Sbjct: 181 NIGHRQPNTRIRITEISGYQDYPAATLES 209

[Close]

BLAST of Moc11g15880 vs. ExPASy TrEMBL
Match: A0A6J1IX10 (50S ribosomal protein L21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480675 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.0e-91
Identity = 183/216 (84.72%), Postives = 195/216 (90.28%), Query Frame = 0


Query: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSH-------PS 60
           MASLTLSLC+ FA+HCR+S+KQN PSSTP FPSNSH+DSFN ALS SSSSH        S
Sbjct: 1   MASLTLSLCSHFASHCRVSTKQNFPSSTPNFPSNSHYDSFNFALSTSSSSHKLSSSSVTS 60

Query: 61  SRAPLPFVLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRY 120
           S + LPF+L+SSESEAAVIESE AASQ VEVP E+APKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SHSALPFLLKSSESEAAVIESELAASQTVEVPSEEAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT  YIGKP+VTNAAVHA+VEEQGLD KVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTEAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 210
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPA+TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPASTLES 216

[Close]

BLAST of Moc11g15880 vs. ExPASy TrEMBL
Match: A0A6J1EHE5 (50S ribosomal protein L21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433392 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.6e-91
Identity = 183/216 (84.72%), Postives = 195/216 (90.28%), Query Frame = 0


Query: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSH-------PS 60
           MASLTLSLC+ FA+HCR+S+KQN PSSTP FPSNS +DSFN ALS SSSSH        S
Sbjct: 1   MASLTLSLCSHFASHCRLSTKQNFPSSTPNFPSNSPYDSFNFALSTSSSSHKLSSSSVTS 60

Query: 61  SRAPLPFVLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRY 120
           S + LPF+L+SSESEAAVIESEPAASQ VEVP E+APKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SHSALPFLLKSSESEAAVIESEPAASQTVEVPSEEAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT  YIGKP+VTNAAVHA+VEEQGLD KVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTEAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 210
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPA+TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPASTLES 216

[Close]

BLAST of Moc11g15880 vs. ExPASy TrEMBL
Match: A0A6J1F5X0 (50S ribosomal protein L21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442642 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.4e-84
Identity = 174/209 (83.25%), Postives = 182/209 (87.08%), Query Frame = 0


Query: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSHPSSRAPLPF 60
           MASLTLSLCA FATHCR+S+KQN P STPI        SF L+        PSSR  L F
Sbjct: 1   MASLTLSLCANFATHCRVSTKQNTPLSTPI------SSSFKLS--------PSSRPALSF 60

Query: 61  VLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK 120
           VL+SSESEAAVI+SEPAASQIVEVP EQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK
Sbjct: 61  VLKSSESEAAVIDSEPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK 120

Query: 121 GANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYKKKKNYRR 180
           GANVNDKITLNKVLLVGTKT  YIGKP+VTNAAVHA+VEEQGL+ KVIVFKYKKKKNYRR
Sbjct: 121 GANVNDKITLNKVLLVGTKTQAYIGKPIVTNAAVHAVVEEQGLNKKVIVFKYKKKKNYRR 180

Query: 181 NIGHRQPNTRIRITEISGYQDYPAATLES 210
           NIGHRQPNTRIRITEISGYQDYPAATLES
Sbjct: 181 NIGHRQPNTRIRITEISGYQDYPAATLES 195

[Close]

BLAST of Moc11g15880 vs. ExPASy TrEMBL
Match: A0A6J1IIA4 (50S ribosomal protein L21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477160 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.3e-82
Identity = 172/209 (82.30%), Postives = 178/209 (85.17%), Query Frame = 0


Query: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSHPSSRAPLPF 60
           MASL LSLC  FATHCR+S+KQN P STPI        SF L+        PSSR  L F
Sbjct: 1   MASLMLSLCTNFATHCRVSTKQNTPLSTPI------SSSFKLS--------PSSRPALSF 60

Query: 61  VLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK 120
           VL+SSESEAAVI SEPA SQIVEVP EQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK
Sbjct: 61  VLKSSESEAAVIISEPAPSQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK 120

Query: 121 GANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYKKKKNYRR 180
           GANVNDKITLNKVLLVGTKT  YIGKP+VTNAAVHA+VEEQGLD KVIVFKYKKKKNYRR
Sbjct: 121 GANVNDKITLNKVLLVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRR 180

Query: 181 NIGHRQPNTRIRITEISGYQDYPAATLES 210
           NIGHRQPNTRIRITEISGYQDYPAATLES
Sbjct: 181 NIGHRQPNTRIRITEISGYQDYPAATLES 195

[Close]

BLAST of Moc11g15880 vs. TAIR 10
Match: AT1G35680.1 (Ribosomal protein L21 )

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-56
Identity = 127/214 (59.35%), Postives = 157/214 (73.36%), Query Frame = 0


Query: 2   ASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSHPS--SRAPLP 61
           +S TLSLC+TF+ HC ++S++    S+ I  S S   S NLA   +    PS  S +   
Sbjct: 4   SSATLSLCSTFSAHCNVNSRR----SSTILCSLS-KPSLNLAKPLTGFLSPSTASTSRTA 63

Query: 62  FVLRSSESEAAVIESEP--------AASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPG 121
           F +    +E +V+E+EP          S + EV  E+A KREEIFAV+M+G RQYIVFPG
Sbjct: 64  FTVAPKFAE-SVVEAEPETTDIEAVVVSDVSEVTEEKA-KREEIFAVIMVGGRQYIVFPG 123

Query: 122 RYIHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFK 181
           RY++TQRLK ANV+D+I LNKVLLVGTKTHTYIGKPVVTNA VHA+VE QGL+DKV+VFK
Sbjct: 124 RYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFK 183

Query: 182 YKKKKNYRRNIGHRQPNTRIRITEISGYQDYPAA 206
           YK KK YRRNIGHRQPNTRIRIT I+GY++YPA+
Sbjct: 184 YKPKKKYRRNIGHRQPNTRIRITGITGYEEYPAS 210

[Close]

BLAST of Moc11g15880 vs. TAIR 10
Match: AT4G30930.1 (Ribosomal protein L21 )

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-27
Identity = 56/108 (51.85%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 93  EEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNA 152
           E +FA+V IGS Q+ V  G  I T++LK  ++NDK+ L KVLL+G+ + T IG+P++ +A
Sbjct: 138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDA 197

Query: 153 AVHAIVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQ 201
            VHA+VEE  LD+KV++FK K++KNYRR  GHRQ  T++RIT+I G +
Sbjct: 198 TVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245

The following BLAST results are available for this feature:

BLAST of Moc11g15880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143625.1	2.9e-108	100.00	50S ribosomal protein L21, chloroplastic [Momordica charantia]	[more]
XP_038899803.1	1.3e-92	87.26	50S ribosomal protein L21, chloroplastic [Benincasa hispida]	[more]
XP_022981606.1	4.2e-91	84.72	50S ribosomal protein L21, chloroplastic-like [Cucurbita maxima]	[more]
XP_022926213.1	5.4e-91	84.72	50S ribosomal protein L21, chloroplastic-like [Cucurbita moschata]	[more]
KAG6607629.1	2.7e-90	83.80	50S ribosomal protein L21, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Moc11g15880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51412	1.7e-55	59.35	50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
P24613	4.4e-51	83.33	50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 P...	[more]
Q8L9A0	3.7e-26	51.85	50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
B8E0B4	1.1e-17	50.00	50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain DSM 6724 / Z-1310) OX...	[more]
A0LPF7	4.1e-17	43.14	50S ribosomal protein L21 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MP...	[more]

BLAST of Moc11g15880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPA7	1.4e-108	100.00	50S ribosomal protein L21, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1IX10	2.0e-91	84.72	50S ribosomal protein L21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EHE5	2.6e-91	84.72	50S ribosomal protein L21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1F5X0	2.4e-84	83.25	50S ribosomal protein L21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IIA4	1.3e-82	82.30	50S ribosomal protein L21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Moc11g15880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G35680.1	1.2e-56	59.35	Ribosomal protein L21	[more]
AT4G30930.1	2.6e-27	51.85	Ribosomal protein L21	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001787	Ribosomal protein L21	TIGRFAM	TIGR00061	TIGR00061	coord: 96..197 e-value: 1.1E-26 score: 91.1
IPR001787	Ribosomal protein L21	HAMAP	MF_01363	Ribosomal_L21	coord: 95..198 score: 22.347687
IPR028909	Ribosomal protein L21-like	PFAM	PF00829	Ribosomal_L21p	coord: 96..196 e-value: 5.8E-31 score: 106.7
IPR028909	Ribosomal protein L21-like	PANTHER	PTHR21349	50S RIBOSOMAL PROTEIN L21	coord: 1..208
None	No IPR available	PANTHER	PTHR21349:SF2	50S RIBOSOMAL PROTEIN L21, CHLOROPLASTIC	coord: 1..208
IPR018258	Ribosomal protein L21, conserved site	PROSITE	PS01169	RIBOSOMAL_L21	coord: 167..189
IPR036164	L21-like superfamily	SUPERFAMILY	141091	L21p-like	coord: 95..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g15880.1	Moc11g15880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome