Moc11g15470 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g15470
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	U6 snRNA-associated Sm-like protein LSm4
Location	chr11: 11663214 .. 11671202 (+)
RNA-Seq Expression	Moc11g15470
Synteny	Moc11g15470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCATCTCGGAGAAAATATTTTCGTTGTTCGGACGACTTGTACTGTAATTCCCACAGACGGCGCCAAATGTTTATGCAAGGATTTGCACAACGTCTATCTAGCTCGAACCTGGTCCTTGCTCCGACTCGAAAAGCGAAGGGAAGACCTGCACAAGAGGGCAAAATCTCTGACGCTCAAGTCAGTAAGCAGCTCGGACTCAATATTAAGTTCGAGGAGAAATTCCCTACCTGATGGTGAAATAAGACCCTCTATTTATAGGTTTAGGTTCCGACAGGGGTTACGACAGGCGGTTACCTTGGTCGGATTTGAGGTCGGATGTGTCGAGTTTGAGCAGGTCGAACTCAGACACATTCTTAGAAATACCAAATCAACCTTTACTAAAAAGTGGCGGGCGCTTCATCTCGGAGAGCTCCGTAAACTTGCTCCTTTGATTCTTCGATCAGCGGCGAATCCTCGTTCTCCACGTAGCGAAGGATATTTTATCCCTAAACATAATCGAAAAACCGAATTCCAAGTGTAAAACTCTGATCCCAGTTAAACAAACCGGACAAAGATAAAAAAATTTCCAACATTGAATTTTCCAAAAATGATACCCAAAAGTTGTGTGAGGTGTTGAAATAAGAAAGGGAAGCCAGCGATGAAGAGGGAGTTATGGGAGAGGAGAATGAGGTTGCCGGATTTGGTGATGAAGAAGGCGAAGAAAGTTGTTGGGCTTGGTGGTGGCATTGGTTGAGCATTCTGTGAGATGTGGAGAAGAGATGTGAACAAGGGACGTCCTTTTTTTTTTTCCTTCTTTAAATTGTAGGGTTTAATTTTTACACTTTAAAATTTAGGGGTCTAATTTTTTCATTTATGAAAGTTTGAGGGTTTAATTTCTACGTTTGAAAGTTTAAGGGTTCAATTGTAACAACAATCATACTTCATGGTGGTTTTGCAATTTACCCTAAATTTAATATTATTTTGTAATAAAACAATAATTTTAAAAAATAAAATATGTTATATGATAATTTGAAAGCTTATCATATAATATAAAATTTTATGAAACAATTTATGTTATGAATGTTATTTTAATTTTTATTACATTGCCTTTAATAATTATTAATAATGGAAAAACAGAAGTTTTACAATTTTAATAGTTATTCCTTAGAAAAATAGTTATTAAAAGAAAGCATGAGTGTAAAAATATATATTGAAACTACTCATTTAAATGTATCCATAAATCATAAAATTGATCCACGATAAGAATGTGAAGGGTTGCAACGAATATTAAAAAATTGTAAATAATGCTTTCTTAAAATTAATTTTATAATTTATGACTTTGAAATTTCAAAATTTTAAAAATCTAACAGTTAAAGTCATTTTTAAATATAAAGTATAACAGTACATTAAAATTAATAATTTAAATATATTTATAGACTTGAAAAAAAATGTAAAAAATTAAAATACGAGAATATTTATTATAAAAAGTTTCTATCAATTTAATTCTAAATTTAATTATAAAAAGTCTAGAGGTACGACATATTTTTTTGGAGGTAAACCTTTAAGTTTTAGATAATACTTAAATGATCATATTTTTAATTTTTAATTTAAGGAAAGGTAAATTGAAGTCTTTAGGACCTTTCACTTAACTAGCATATTTACATCAAAATTAAATTAATATTTCTTTTTACATTTTTTAATATTTATAAAATTGAATTAGTAAATGAATTCAAATTTTTGTATTTAGGTAAAATAAAATGAGCAGTAATAAACCGAACCACTATCACCATCTCACCCATTCATTTATTTCATTCTAATAACTTATAAAACTTTTAAAATTTCATCATTAATTACAATAAAACAAAGTCATAGGTCTTATAATTAATTTTTAGAAATAAATGTATATATCTTTTTTATAATCAACTATATAATTCTATAATTCTTCACTCAAAATATTTATTTTTAAAATTCATAACTTTTCATTATAAAATAACTAATAAGTAAATTTTTTAAATAAATGTAATCATTTTAATATGGAATATTATTAAAAATAGATTTTTTCGATAAAAGTAGTTCTTAATTAAAAAAATGTACTAAATCATCGTTACAAACTCATACATCCCACATAAACTTTGGATTTTTAAATATTTATTTATTATTTATTTTTAATAAAGACGGTTAATACTTTTAATGAATAATAATTTAATTATTATTATTATTTTAGGTGCCAATTAGTATTGAGCTAAGTTCATCTTGACAAATGACTATAGCATTTGATATATGTTCAACGTTTTAAAAATTCAAATGATCATTAATATATGATTAAATGAAATTAAGTATCATGTGCAAGTATTGAAATACTAGTTGAAGGAAAAGTACAAATTCTATCCTCTGCATGAATAACGAATTTTTTTATATCTATAATTGGTTTTTATTTTAAGAAACAAATTTTATTTAAGAAAAAATATTGTTATAGATCTTTAGTTTCTTTTTAAGTTTGATTTTTTTCTTGGTGTTAAATTAAATAGAAATTAATTAAAAAAACAATTTATATTTCATTAAATTATTCTAAAAGTAATTGATTCAATAAAAATTATATATAATTCTTATAAAATAAGAAAATTTGGTTTATTATTTCAAGTTTCATCAAATCTATATTTAAACAGATAATTATTTATTTTTACTATACAAAATATTTTTTTTTTTACTATAGAAAAAATACTGTTCTAAGTCCTATTGAACTGATTTTATCGTATAAAGTTTGATTCATAAATATTGAGAGTTGTGTCTAATAGACATTTGAACTTTAAAAAAATATTTAATAGGTCTCCAAATTTTTAATTCTACATCGAATAGGTTTTCGAGTTCTCAATTTTATGAGTTCAACAATCTATTAGTTTAAGAACTTTATTATACATAATTTTTTTTAAAGTTCAAAAACCTGTTTTACTTCTTTTTTTTTTTTACAAGTTCAAAGACCTGTTAATTATACATCATATGGAAATTTTGGGGAGAAAATTTATAAATTAACCAATTTAGTATAAAAATATATAAACTAAATACATATCAATGCGCTTAAATTATTTTTATGTAATCTCCTAACATAAAGTTGTGGATCTACCATCTATAATGTAATATTTGAAATGTAATATTTGACACCAAAATTCTAGAGCATATTTACTTAATTTTATATAAAGCTCCTAAAAAGATTTCTAGATCCACCGTACAATTATAATTTCTTTAGGAGAATTAAAAAAAGTTAAAGCTATATATATATATATATCTATATCTATATCTATATTTATATCTATACTATATTAAAAAGATAGGAGCTAGGAAAAACATTTTTGGACACGTTTGCCCTTTACTAAATATTATTACAAATATTAAATTAATTATTAATTATTAATTATCCATACTATAAATGCATGGAATATAAAAGGTTAGAATGCAAAAAGTTTTCCAACAACATAAAATTAATTTTTTCTTTAATTAAAATTCATACTAGAATTTCAAGAGTTTTAGAATTTGAAAGGCTTTTGTAACGTTTTATCCTCTACTACTATAAAAATAGGCTTTCTTCTACATGTTTTTAACAAGTTTCAATACTTTTTTATTCTTAGTTACTTCAAACATCTCTCAAAGATGATTCAATCATGAAAATATCTCAAGATATTTGTGACATATTCATCAAGTTGCAAGGGAGGTATATGTTGAATGTACATATCTCGAATACTAGGTTTGTGACATTACCATTCCACAATTTTACAAAGTTGAATAATAGTATATGTCAAGCAATCTTCAAGAATGAACATATTTACTCTAAAAGATGAGTGTATAGTAAGTATTTGGATTTTTTTTTGTTACTATTGTTATTTTTCTAATTAGTGTGTTTTTTATTTGGAATGTTTTTTTTAGCAATTTTATTTAGTTTAGGATTTGGATTTTTCTTTTTGTTACTAATGTTTTTTTATTGTTCAGTGTACTTTTTTTTATTTGGAATGTTTCTTTTTTGAGCAATTTTATTTAGAATATTTGTTTAAAATATAGATAATTACAAGCGCATGTTCTTATTGTTGAAAAAAAAAACAATCATAGAAGTCAATACATAAAAAAAATTTTAATTAATAAATTAATTATAAACAATAATTTGTATAGAATCTTAAAAGGTGGAATATAAACTTTTGGTATTTTATTTTCTAATAATATAATTTGAAGAATTTTTCTTTAATAATTTTAATTATAATATAAAATTAAATCAATAAAATAATTTATATTTAGTTAAAAAATTCAACATATATAACAAAATGTCAGCTCTAAACAAATATTTAATAAACAAACAAAATATTAAAAAAATAAAATAAAGGACCCGTATTAGGGTGAAATAATTTAAAAATAAAAATATTAAAATACCTATTTACTTTTTTATTAATATATAATTTTTTCCTTTACTTTTAATTTATTTATTTACAAAATATGTCATTAACAATTAATTATAAATAGTACATTTTATTATTAGTAATGAGCTGTCAATAATAATAAATATATATAAAAATTAATCTTAATTATTTTTAAAAATAATTATACTTAAAATATTTTACGTGAAATTATATAAAATTTAAGTTACCTTATAATTAAAAAAAATTTTTACGTGCATTGCAAGTGGTAATACACTAGTATATATAAAAGAAGAGAATGATTAGGGTGGGGGAAGAGAACAGTAGTTTTCGTGACAATTCATGAAATTAAAACGTAAAATTTTCTCCTTCCTCATTCAAAGTGAAATTATAATTGTGTTTAAGATTGAGAACAATTTTTCCTCAATTTTACCACGAGGAACTTAATTTTTTCCGACAATCTTCACGCTATTTCTAAAAATAGCATGGGTGAGTCCTATGCTGACAGAATTTGTTCATCAACCCTTTACTAAAGGTTCTCATGCTCGCTGCGATAGATGTACGTTGGGTAAATTCGAACCCCTCACCTTTAGACAATATAGAATTAATATATAAACTATGTTTAAAATGTAACAAAACTAGTTGATGTCCAAGTAGTCATGCTGCAGGGATTTTTTCTTTTTATTTTTTTTCTCAGTATCATATAACCCAAAAATGCAAATATTTAGAACGGAAAAAGCAAAAAGCAAATATTTTAGAATTACCACTTTATTTTTAATATATATACAAGAATAATTACCACTTTCTTTCATTCACATTCGTCCAAAGCAAAGCCTTAGGTCCGCCGCCCTTCTCCGGCGACGAGTCACGATTCCTTTTCTACGCCGTCGCCGTCGCCACCCGTCGTCTTGTTTTTCTCTTGCGCCGCCGTTGGCCCAATAAAGCCCAAACCCAAAAACCGAACCGATCGATTCCATTTCAGATTAAAGATCGGTTTTTTTCAAAATTGGACATTGGTCCGGTTGTTTGTTCTTCGAAAACCCAAAACATTGTTGTAGTCTCGGGACATTAGATGTAGAAGAAAAGTTTGGTATTTAAACCTATTTTCAAAGATTTCCTGCGAGCGCTTTTGAAAGTCCTCAAAATCCACCATTCACTTCGGGATCGAGCGCTCCAGGGGCTGGTAATTCCGTTTCGCTCTTCACTTTCTTAATTTTCAGTTTAATCTTTCGTTGTACGAATCTGTTTGTTCGAATGTCGCCTTGGGGATGATCATCCGATAAATTCTTTTTAGGGTTTGTGCGCGATAAACTAATAGTTCTTTGTTTTTGTAATTTTGTTTTTAACAGGTTTTTTCTGCTTCTAGAATCTGCTCCGTGTCCTAGAAGATGGTATGTTCCCCTTGAAACATTCTTTTTTGTGCCCTTTTGTTTTGAACTCAGTTGCAAATTTTGCTGGCTGTGTCTGATGGTGGATGTGTTTATTCCTTAAATGTCTCGGATAATTTGAACTACTTCCTTCGAAGGCGTCATCATGGCTTGTTTGTTTTTGTCTTTGTTCTGTTTTTGGGTAAACTCTGATTGAAATTTCCCACTGCAGCTTCCCCTTTCGCTCCTAAAGACTGCTCAAGGGCATCCAATGGTAAGAGGCTCCTTCATTTCTTTTTTTCCATAAGTGTACCAGTAAAATTATGCGCGAGAATCACATTTGATTGTAGAGAAACTCATTGGATTTAAAATCCCAGATAGGTGGCCGTGATGTGATTTGAATTTGTTCTCCCAAGGTCCACTTACTTTTTTGTTTTTCCACATGAGTTGATGCCATTGTGCCAATTCTGGTGGTTCTTTGGGCTCATTTTGATTGAGATATTTGGGCTGCTATGTCAAGAACTTCTATAGTAAGAATTTGTTTTTAAAACTTATTTTAAGAATGTTTGGTTTCTGTTTTGCAACAGTTAGTGGAACTGAAAAACGGGGAGACTTACAATGGCCACTTGGTTAATTGTGATACATGGATGAACATTCATCTCCGGGAAGTCATCTGCACTTCTAAAGTAATGCATTCATTTTTTTAATTTTATGGATGAACTTTTCTCTTTTGCATTTACTTTTATTTATTTTTTTCTGGAGACTGAATTGATAATAAATAAATTTTCCAATTATCAAATGTAGGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATCCGCGGTAATACAATCAAGTATTTGAGAGTTCCTGATGAGGTATTCATGGAAGTTGTTGCAATTATTGAAAGTCTTATTGTGACTTTTGATGCATTGGAGAATCAGTTACATTACATGCTTGTAGAAAGAAAACGCATGCCTTTAAATTTAGTTCTTCTTCAACTTCTATAACACGTTTACCACTTTGCCACATCTTATTTTGATTTCTAGTTACTATCATTTTTTTCTCTTCTTTTACTTATCCTTTTTACACCTCTGTAATCATCTTTTAACATATTAATATTATGTTATCATTCCTTATCCACCGGAAAAGAACTTGTTAGCATTGTTCTTTGTTTTTCTATTGATTGAAGTTATTGTTTGCTTCTTTTATTTGACCTATCCAATGTGGTAAATGCATACTAAATTTTTGTGTGAACCGTTGCAATACTGTTAGCTCCTCTCAGTACTCACACACGAAGCATTCTGTTTCACTATTATGTATTCTTTTTCCAGGTTATTGATAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGGTATGCTGTTTACGAAATTTAGAAGACAGTGATTAATGTCATTTTTTGCCCTTGGTTTTGATAAGTTAGAGCTTTAGTGTCAAGGAAACTGATGGTTGGAGATTGAATGTTCAGATAGGAAACCACTGGGCATAGGGCGTGGTAGAGGAAGAGGCCGTGAAGATGGTCCTGGTGGAAGACCAGCCAAAGGAATGGGGCGAGGCTTTGATGATGGTTCTAAAGCTTCATCTGGAGGCCGTGGAAAGGGTGGCCCAGGTGGAAAACCCGGTGCCAACAGAGGTAAATTGAATTCAATCTATTATGGTTGATGAATAAATTTACTTGATTTTTATTATTAGGTATGACCTAGGCAGTGAAAGTCTATTATATTCGGTCCATATTGTTTTTTGTCTTTTGATTTTGAAAATTAAAATTAGATATACCCATGCCTTGTTTAATTTTTCATCTTTTAGAGACTTTGAGCCAAATTTCAAAAAACAAAATATAGGAGTTTTGAAAACTATAATTTAAAAAAAAATATCCGTGAGTGTCTAGGCCCAACCTTTTTTTTCTTTTTTCTTTTTTGGATAAGAAGCCGAAAGTTCTCTTATTTTTTCAATAGCCTTGATAACCACTAGGCCAATCCATGGCGGTTAATTTTTTATCTGGATTTCAAAATTGATTTTGAAAGAAAACAAAGAAAAATGTTTGCATTACTTTTAAAAAGAAGAAAACCAGAAACAAAAACGTTGTCATTAGATGAGGTGGAGAATTAAAAGGACTACCACTTCCTCCTTTGCTGATAAATATTTGCACAAAGAAGAATGCCATGTTAACCTGTGGTCTTTTTTTGATATATAGTTGGAGGGAGAGGCCGAGGATGA

mRNA sequence

ATGAACCATCTCGGAGAAAATATTTTCGTTGTTCGGACGACTTGTACTGTAATTCCCACAGACGGCGCCAAATGTTTATGCAAGGATTTGCACAACGTCTATCTAGCTCGAACCTGGTCCTTGCTCCGACTCGAAAAGCGAAGGGAAGACCTGCACAAGAGGGCAAAATCTCTGACGCTCAAGTCAGTAAGCAGCTCGGACTCAATATTAAGTTCGAGGAGAAATTCCCTACCTGATGGTGAAATAAGACCCTCTATTTATAGGTTTAGGTTCCGACAGGGGTTACGACAGGCGGTTACCTTGGTCGGATTTGAGGTCGGATGTGTCGAGTTTGAGCAGCTTCCCCTTTCGCTCCTAAAGACTGCTCAAGGGCATCCAATGTTAGTGGAACTGAAAAACGGGGAGACTTACAATGGCCACTTGGTTAATTGTGATACATGGATGAACATTCATCTCCGGGAAGTCATCTGCACTTCTAAAGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATCCGCGGTAATACAATCAAGTATTTGAGAGTTCCTGATGAGGTTATTGATAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCACTGGGCATAGGGCGTGGTAGAGGAAGAGGCCGTGAAGATGGTCCTGGTGGAAGACCAGCCAAAGGAATGGGGCGAGGCTTTGATGATGGTTCTAAAGCTTCATCTGGAGGCCGTGGAAAGGGTGGCCCAGGTGGAAAACCCGGTGCCAACAGAGTTGGAGGGAGAGGCCGAGGATGA

Coding sequence (CDS)

ATGAACCATCTCGGAGAAAATATTTTCGTTGTTCGGACGACTTGTACTGTAATTCCCACAGACGGCGCCAAATGTTTATGCAAGGATTTGCACAACGTCTATCTAGCTCGAACCTGGTCCTTGCTCCGACTCGAAAAGCGAAGGGAAGACCTGCACAAGAGGGCAAAATCTCTGACGCTCAAGTCAGTAAGCAGCTCGGACTCAATATTAAGTTCGAGGAGAAATTCCCTACCTGATGGTGAAATAAGACCCTCTATTTATAGGTTTAGGTTCCGACAGGGGTTACGACAGGCGGTTACCTTGGTCGGATTTGAGGTCGGATGTGTCGAGTTTGAGCAGCTTCCCCTTTCGCTCCTAAAGACTGCTCAAGGGCATCCAATGTTAGTGGAACTGAAAAACGGGGAGACTTACAATGGCCACTTGGTTAATTGTGATACATGGATGAACATTCATCTCCGGGAAGTCATCTGCACTTCTAAAGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATCCGCGGTAATACAATCAAGTATTTGAGAGTTCCTGATGAGGTTATTGATAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCACTGGGCATAGGGCGTGGTAGAGGAAGAGGCCGTGAAGATGGTCCTGGTGGAAGACCAGCCAAAGGAATGGGGCGAGGCTTTGATGATGGTTCTAAAGCTTCATCTGGAGGCCGTGGAAAGGGTGGCCCAGGTGGAAAACCCGGTGCCAACAGAGTTGGAGGGAGAGGCCGAGGATGA

Protein sequence

MNHLGENIFVVRTTCTVIPTDGAKCLCKDLHNVYLARTWSLLRLEKRREDLHKRAKSLTLKSVSSSDSILSSRRNSLPDGEIRPSIYRFRFRQGLRQAVTLVGFEVGCVEFEQLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG

Homology

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BLAST of Moc11g15470 vs. NCBI nr
Match: XP_022143617.1 (probable U6 snRNA-associated Sm-like protein LSm4 [Momordica charantia])

HSP 1 Score: 294.7 bits (753), Expect = 8.0e-76
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 174 RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG 233
           RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG 121

Query: 234 SKASSGGRGKGGPGGKPGANRVGGRGRG 262
           SKASSGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 122 SKASSGGRGKGGPGGKPGANRVGGRGRG 149

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BLAST of Moc11g15470 vs. NCBI nr
Match: XP_011653886.2 (probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740554.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740555.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740556.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740557.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >KAE8649735.1 hypothetical protein Csa_012390 [Cucumis sativus])

HSP 1 Score: 292.0 bits (746), Expect = 5.2e-75
Identity = 145/148 (97.97%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 174 RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG 233
           RGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRGREDGPGGRPAKGMGRGFDDG
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDDG 121

Query: 234 SKASSGGRGKGGPGGKPGANRVGGRGRG 262
           +KAS+GGRGKGGPGGKPGANRVGGRGRG
Sbjct: 122 AKASTGGRGKGGPGGKPGANRVGGRGRG 149

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BLAST of Moc11g15470 vs. NCBI nr
Match: XP_008454536.1 (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_008454538.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_008454539.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 292.0 bits (746), Expect = 5.2e-75
Identity = 145/148 (97.97%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 174 RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG 233
           RGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRGREDGPGGRPAKGMGRGFDDG
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDDG 121

Query: 234 SKASSGGRGKGGPGGKPGANRVGGRGRG 262
           +KA+SGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 122 AKAASGGRGKGGPGGKPGANRVGGRGRG 149

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BLAST of Moc11g15470 vs. NCBI nr
Match: XP_038896461.1 (uncharacterized protein LOC120084721 [Benincasa hispida])

HSP 1 Score: 288.9 bits (738), Expect = 4.4e-74
Identity = 144/153 (94.12%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 109 VEFEQLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM 168
           V  + LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM
Sbjct: 160 VSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM 219

Query: 169 PECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGR 228
           PECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKP G+GRGRGRGREDGPGGRPAKGMGR
Sbjct: 220 PECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGPGGRPAKGMGR 279

Query: 229 GFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG 262
           GFDD +KA+SGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 280 GFDDSAKAASGGRGKGGPGGKPGANRVGGRGRG 312

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BLAST of Moc11g15470 vs. NCBI nr
Match: XP_011659113.1 (sm-like protein LSM4 [Cucumis sativus] >KGN44471.1 hypothetical protein Csa_016908 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 5.8e-74
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 174 RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG 233
           RGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRGREDGPG RPAKGMGRGFDDG
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDDG 121

Query: 234 SKASSGGRGKGGPGGKPGANRVGGRGRG 262
           +KA+SGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 122 AKAASGGRGKGGPGGKPGANRVGGRGRG 149

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BLAST of Moc11g15470 vs. ExPASy Swiss-Prot
Match: Q43582 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.3e-57
Identity = 121/149 (81.21%), Postives = 126/149 (84.56%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY+
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYV 61

Query: 174 RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR-GREDGPGGRPAKGMGRGFDD 233
           RGNTIKYLRVPDEVIDKVQEE KSR DRKP G+GR R R GR+D   GR  KG+GRG DD
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMDD 121

Query: 234 GSKASSGGRGKGGPGGKPGANRVGGRGRG 262
           G    + GRGKGGP  K G  R GGRGRG
Sbjct: 122 G---GAKGRGKGGPSAKSG-GRGGGRGRG 146

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BLAST of Moc11g15470 vs. ExPASy Swiss-Prot
Match: Q9LGE6 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-56
Identity = 122/150 (81.33%), Postives = 129/150 (86.00%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECYI
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61

Query: 174 RGNTIKYLRVPDEVIDKVQEET-KSRADRKPLGIGRGRGRGR-EDGPGGRPAKGMGRGFD 233
           RGNTIKYLRVPDEVIDKVQEET KSR+DR+P G+GRGRGRG     PGGR   G+GRG D
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGR---GIGRGQD 121

Query: 234 DGSKASSGGRGKGGPGGKPGANRVGGRGRG 262
           DG     GGRG+GG GGK G  + GGRGRG
Sbjct: 122 DGGSKGGGGRGRGGIGGK-GGIKGGGRGRG 147

[Close]

BLAST of Moc11g15470 vs. ExPASy Swiss-Prot
Match: Q9ZRU9 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN=LSM4 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.8e-55
Identity = 118/149 (79.19%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CYI
Sbjct: 2   LPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYI 61

Query: 174 RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRG-FDD 233
           RGNTIKYLRVPDEVIDKVQEETKSRADRKP G+GRGRGRGRE+G G R  +G GR     
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAGRDVMMQ 121

Query: 234 GSKASSGGRGKGGPGGKPGANRVGGRGRG 262
            +KA    RG+G   GK G    GGRGRG
Sbjct: 122 VAKAWVEVRGRGASAGKSGGR--GGRGRG 148

[Close]

BLAST of Moc11g15470 vs. ExPASy Swiss-Prot
Match: F4K4E3 (Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 8.4e-52
Identity = 113/148 (76.35%), Postives = 117/148 (79.05%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 174 RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG 233
           RGNTIKYLRVPDEVIDKVQEE K+R DRKP G+GRGRGRG +DG G R            
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG-GAR------------ 121

Query: 234 SKASSGGRGKGGPGGKPGANRVGGRGRG 262
                 GRG+G   GK G NR  GRGRG
Sbjct: 122 ------GRGRGTSMGKMGGNRGAGRGRG 129

[Close]

BLAST of Moc11g15470 vs. ExPASy Swiss-Prot
Match: Q9QXA5 (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX=10090 GN=Lsm4 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.8e-39
Identity = 89/139 (64.03%), Postives = 101/139 (72.66%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECYI
Sbjct: 2   LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61

Query: 174 RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRG-FDD 233
           RG+TIKYLR+PDE+ID V+EE            GRGRG  ++    GR   G GRG F  
Sbjct: 62  RGSTIKYLRIPDEIIDMVREEAAK---------GRGRGGPQQKQQKGRGMGGAGRGVFGG 121

Query: 234 GSKASSGGRGKGGPGGKPG 252
             +    G G+G P  KPG
Sbjct: 122 RGRGGIPGAGRGQPEKKPG 131

[Close]

BLAST of Moc11g15470 vs. ExPASy TrEMBL
Match: A0A6J1CRC5 (U6 snRNA-associated Sm-like protein LSm4 OS=Momordica charantia OX=3673 GN=LOC111013478 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 3.9e-76
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 174 RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG 233
           RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG 121

Query: 234 SKASSGGRGKGGPGGKPGANRVGGRGRG 262
           SKASSGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 122 SKASSGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of Moc11g15470 vs. ExPASy TrEMBL
Match: A0A1S3BYD6 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103494929 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.5e-75
Identity = 145/148 (97.97%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 174 RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG 233
           RGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRGREDGPGGRPAKGMGRGFDDG
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDDG 121

Query: 234 SKASSGGRGKGGPGGKPGANRVGGRGRG 262
           +KA+SGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 122 AKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of Moc11g15470 vs. ExPASy TrEMBL
Match: A0A0A0L3Q6 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 9.6e-75
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 109 VEFEQLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM 168
           +  + LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM
Sbjct: 92  ISLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM 151

Query: 169 PECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGR 228
           PECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRGREDGPG RPAKGMGR
Sbjct: 152 PECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGR 211

Query: 229 GFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG 262
           GFDDG+KA+SGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 212 GFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG 244

[Close]

BLAST of Moc11g15470 vs. ExPASy TrEMBL
Match: A0A0A0K9I4 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.8e-74
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 174 RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG 233
           RGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRGREDGPG RPAKGMGRGFDDG
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDDG 121

Query: 234 SKASSGGRGKGGPGGKPGANRVGGRGRG 262
           +KA+SGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 122 AKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of Moc11g15470 vs. ExPASy TrEMBL
Match: A0A6J1J2N4 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC111480701 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 3.6e-74
Identity = 143/148 (96.62%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 174 RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG 233
           RGNTIKYLRVPDEVIDKVQEETK+RADRKP G+GRGRGRGREDGPGGRPAKGMGRGFDDG
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEETKTRADRKPPGVGRGRGRGREDGPGGRPAKGMGRGFDDG 121

Query: 234 SKASSGGRGKGGPGGKPGANRVGGRGRG 262
           +KA+SGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 122 AKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of Moc11g15470 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 205.3 bits (521), Expect = 6.0e-53
Identity = 113/148 (76.35%), Postives = 117/148 (79.05%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 174 RGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDDG 233
           RGNTIKYLRVPDEVIDKVQEE K+R DRKP G+GRGRGRG +DG G R            
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG-GAR------------ 121

Query: 234 SKASSGGRGKGGPGGKPGANRVGGRGRG 262
                 GRG+G   GK G NR  GRGRG
Sbjct: 122 ------GRGRGTSMGKMGGNRGAGRGRG 129

[Close]

BLAST of Moc11g15470 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-12
Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L ++  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFI 66

Query: 174 RGNTIKYLRVPD-----EVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGR 233
           RG+ ++++ +PD      +  ++    K ++    LG+GRGRG  R     G+PA G GR
Sbjct: 67  RGSKVRFMVIPDILKHAPMFKRLDARIKGKS--SSLGVGRGRGAMR-----GKPAAGPGR 126

Query: 234 GFDDGSKASSGGRGKGGP 247
           G        +GGRG   P
Sbjct: 127 G--------TGGRGAVPP 128

[Close]

BLAST of Moc11g15470 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-11
Identity = 43/134 (32.09%), Postives = 72/134 (53.73%), Query Frame = 0


Query: 114 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 173
           +P+ LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66

Query: 174 RGNTIKYLRVPDEVID-KVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDD 233
           RG+ +++L +PD + +  + ++ + +     LG+GRGRG           AKG GRG   
Sbjct: 67  RGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGRGAAMR-------AKGTGRG--- 125

Query: 234 GSKASSGGRGKGGP 247
               + GGRG   P
Sbjct: 127 ----TGGGRGAVPP 125

[Close]

BLAST of Moc11g15470 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 56.6 bits (135), Expect = 3.4e-08
Identity = 40/101 (39.60%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 129 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD--E 188
           +ELKNG   +G +   D  MN HL+ V  T K G     +    +RGN I+Y  +PD   
Sbjct: 17  IELKNGTIVHGTITGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 76

Query: 189 VIDKVQEET------KSRADRKPLGIGRGRGRGREDGPGGR 222
           +   + E+T      K  A + P G GRGRGRGR  G GGR
Sbjct: 77  LETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRGGR 116

[Close]

BLAST of Moc11g15470 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 48.9 bits (115), Expect = 7.2e-06
Identity = 40/111 (36.04%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 129 VELKNGETYNGHLVN----------CDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTI 188
           +ELKNG   +G + +           D  MN HL+ V  T K G     +    +RGN I
Sbjct: 17  IELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNI 76

Query: 189 KYLRVPD--EVIDKVQEET------KSRADRKPLGIGRGRGRGREDGPGGR 222
           +Y  +PD   +   + E+T      K  A + P G GRGRGRGR  G GGR
Sbjct: 77  RYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRGGR 126

The following BLAST results are available for this feature:

BLAST of Moc11g15470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143617.1	8.0e-76	100.00	probable U6 snRNA-associated Sm-like protein LSm4 [Momordica charantia]	[more]
XP_011653886.2	5.2e-75	97.97	probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_03174055...	[more]
XP_008454536.1	5.2e-75	97.97	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_...	[more]
XP_038896461.1	4.4e-74	94.12	uncharacterized protein LOC120084721 [Benincasa hispida]	[more]
XP_011659113.1	5.8e-74	97.30	sm-like protein LSM4 [Cucumis sativus] >KGN44471.1 hypothetical protein Csa_0169...	[more]

BLAST of Moc11g15470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43582	1.3e-57	81.21	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 P...	[more]
Q9LGE6	1.1e-56	81.33	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonic...	[more]
Q9ZRU9	2.8e-55	79.19	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN...	[more]
F4K4E3	8.4e-52	76.35	Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1	[more]
Q9QXA5	4.8e-39	64.03	U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX=10090 GN=Lsm4 PE=1 S...	[more]

BLAST of Moc11g15470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CRC5	3.9e-76	100.00	U6 snRNA-associated Sm-like protein LSm4 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3BYD6	2.5e-75	97.97	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103494929...	[more]
A0A0A0L3Q6	9.6e-75	94.12	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3...	[more]
A0A0A0K9I4	2.8e-74	97.30	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3...	[more]
A0A6J1J2N4	3.6e-74	96.62	U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of Moc11g15470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27720.1	6.0e-53	76.35	Small nuclear ribonucleoprotein family protein	[more]
AT1G20580.1	5.1e-12	34.06	Small nuclear ribonucleoprotein family protein	[more]
AT1G76300.1	5.7e-11	32.09	snRNP core protein SMD3	[more]
AT4G02840.1	3.4e-08	39.60	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.2	7.2e-06	36.04	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..61
None	No IPR available	GENE3D	2.30.30.100		coord: 113..195 e-value: 1.5E-36 score: 125.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..261
None	No IPR available	PANTHER	PTHR23338:SF42	SM-LIKE PROTEIN LSM4	coord: 114..249
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 117..183 e-value: 1.4E-20 score: 84.4
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 118..182 e-value: 2.2E-16 score: 59.3
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 114..249
IPR034101	Sm-like protein Lsm4	CDD	cd01723	LSm4	coord: 114..189 e-value: 1.19595E-59 score: 181.62
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 115..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g15470.1	Moc11g15470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006298	mismatch repair
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0033962	P-body assembly
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006396	RNA processing
cellular_component	GO:0032300	mismatch repair complex
cellular_component	GO:0000932	P-body
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0030983	mismatched DNA binding
molecular_function	GO:0017070	U6 snRNA binding