Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTAAAGGATCTTCTTATGTGCAAGAAGATACACGAGACATTGGGGGAGAGACCAACGGATATGACAGACAAAGCTTGGAATGAGATAGATGAGCAGGATGTTGCAAACGTCAGACTGACACTAACGATGAGTGTATGCAGTTTCATGGCGAAAGAGACAACTGCAAAAGAATTGTTGCAGGCCTTGCAAGACGGGATGAGAAACCTTCTGCCAGTATTTTAACATCCACATGGAGGAGGGAACCTCAATGAATTCCCACATAAATGAGCTCACCGATATCTTGAACAAATTAGAATGGATGGGTATCAAGATCGATGAGGAGGTAAAGGCAATGAGGTTGCTGACATCTTTGCCTGACAGTTGGGAGACGATGAAGACCGCGGTGTCGAATTCGTTAGGGGACAATAGCTTGAAATTTTCAGCTATTTGTGATGCCTCCTTATCTGAGGAAGCCCGAAGAAAATTAGGGAAAATATCTGCATCTACTTCAGGGGCAGAAAATAGGATTAAATCAACGTTGGTAGCTCAGTATAAGGGGAAGGGCAAGATGAGATATGGGAAACAGTAG
mRNA sequence
ATGCAAGTAAAGGATCTTCTTATGTGCAAGAAGATACACGAGACATTGGGGGAGAGACCAACGGATATGACAGACAAAGCTTGGAATGAGATAGATGAGCAGGATGTTGCAAACGTCAGACTGACACTAACGATGAGTTATTTTAACATCCACATGGAGGAGGGAACCTCAATGAATTCCCACATAAATGAGCTCACCGATATCTTGAACAAATTAGAATGGATGGGTATCAAGATCGATGAGGAGGTAAAGGCAATGAGGTTGCTGACATCTTTGCCTGACAGTTGGGAGACGATGAAGACCGCGGTGTCGAATTCGTTAGGGGACAATAGCTTGAAATTTTCAGCTATTTGTGATGCCTCCTTATCTGAGGAAGCCCGAAGAAAATTAGGGAAAATATCTGCATCTACTTCAGGGGCAGAAAATAGGATTAAATCAACGTTGGTAGCTCAGTATAAGGGGAAGGGCAAGATGAGATATGGGAAACAGTAG
Coding sequence (CDS)
ATGCAAGTAAAGGATCTTCTTATGTGCAAGAAGATACACGAGACATTGGGGGAGAGACCAACGGATATGACAGACAAAGCTTGGAATGAGATAGATGAGCAGGATGTTGCAAACGTCAGACTGACACTAACGATGAGTTATTTTAACATCCACATGGAGGAGGGAACCTCAATGAATTCCCACATAAATGAGCTCACCGATATCTTGAACAAATTAGAATGGATGGGTATCAAGATCGATGAGGAGGTAAAGGCAATGAGGTTGCTGACATCTTTGCCTGACAGTTGGGAGACGATGAAGACCGCGGTGTCGAATTCGTTAGGGGACAATAGCTTGAAATTTTCAGCTATTTGTGATGCCTCCTTATCTGAGGAAGCCCGAAGAAAATTAGGGAAAATATCTGCATCTACTTCAGGGGCAGAAAATAGGATTAAATCAACGTTGGTAGCTCAGTATAAGGGGAAGGGCAAGATGAGATATGGGAAACAGTAG
Protein sequence
MQVKDLLMCKKIHETLGERPTDMTDKAWNEIDEQDVANVRLTLTMSYFNIHMEEGTSMNSHINELTDILNKLEWMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNSLGDNSLKFSAICDASLSEEARRKLGKISASTSGAENRIKSTLVAQYKGKGKMRYGKQ
Homology
BLAST of Moc11g15270 vs. NCBI nr
Match:
VFQ98151.1 (unnamed protein product [Cuscuta campestris])
HSP 1 Score: 102.4 bits (254), Expect = 3.7e-18
Identity = 65/169 (38.46%), Postives = 97/169 (57.40%), Query Frame = 0
Query: 1 MQVKDLLMCKKIHETLGERPTDMTDKAWNEIDEQDVANVRLTLTMSY-FNI--------- 60
MQ++DLL+ K + LG++P M+D W +D + ++ +RL+LT + FNI
Sbjct: 1 MQIEDLLVQKDLDAALGDKPEKMSDADWAGLDWKAMSVIRLSLTKNVAFNILKEKELVNT 60
Query: 61 HMEEGTSMNSHINELTDILNKLEWMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNSLGDN 120
M EGTS+ HIN+L IL +L +GIK D+EV+A+ LL+SLP+SW TAV+ S+G +
Sbjct: 61 RMREGTSVTEHINKLNSILTRLASVGIKFDDEVQALLLLSSLPNSWSGTVTAVTGSVGPD 120
Query: 121 SLKFSAICDASLSEEARRK-------------LGKISASTSGAENRIKS 147
F I D L E+ RRK G+ ++ SG+ NR +S
Sbjct: 121 GFTFDQIRDLILGEDVRRKSSGESSGELLHVGRGRRNSRGSGSRNRQRS 169
BLAST of Moc11g15270 vs. NCBI nr
Match:
RVW62858.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 101.3 bits (251), Expect = 8.2e-18
Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = 0
Query: 1 MQVKDLLMCKKIH-ETLGERPTDMTDKAWNEIDEQDVANVRLTLTMSYFNIHMEEGTSMN 60
MQ++D L +K+H LG +P M + W +D Q + +RLTL+ S + M E S+
Sbjct: 24 MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVMAENASVA 83
Query: 61 SHINELTDILNKLEWMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNSLGDNSLKFSAICD 120
H+NE I N+L ++ I D+E++A+ +L SLP+SWE M+ AVSNS+G LK++ I D
Sbjct: 84 QHLNEFNTITNQLSFVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSMGKEKLKYNDIRD 143
Query: 121 ASLSEEARRK-LGKISASTSGAENRIKSTLVAQYKGK 156
L+EE RR+ G+ S S S R + ++ + + K
Sbjct: 144 LILAEEIRRRDAGETSGSGSALNLRQEVEVITEIQIK 180
BLAST of Moc11g15270 vs. NCBI nr
Match:
RVW67125.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 101.3 bits (251), Expect = 8.2e-18
Identity = 63/164 (38.41%), Postives = 93/164 (56.71%), Query Frame = 0
Query: 1 MQVKDLLMCKKIH-ETLGERPTDMTDKAWNEIDEQDVANVRLTLTMSYFNIHMEEGTSMN 60
MQ++D L +K+H LG +P M + W +D Q AN ++ L FN+ M E S+
Sbjct: 24 MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQPSANNKVHLMKKLFNLKMAENASVA 83
Query: 61 SHINELTDILNKLEWMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNSLGDNSLKFSAICD 120
H+NE I N+L + I D+E++A+ +L SLP+SWE M+ AVSNS G LK++ I D
Sbjct: 84 QHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRD 143
Query: 121 ASLSEEARRKLGKISASTSGAENRIKSTLVAQYKGKGKMRYGKQ 164
L+EE RR + + TSG+ S L + +G+G R Q
Sbjct: 144 LILAEEIRR---RDAGETSGS----GSALNLETRGRGNNRNSNQ 180
BLAST of Moc11g15270 vs. NCBI nr
Match:
KAG7968649.1 (hypothetical protein I3843_08G165400 [Carya illinoinensis])
HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 69/202 (34.16%), Postives = 102/202 (50.50%), Query Frame = 0
Query: 1 MQVKDLLMCKKIH-ETLGERPTDMTDKAWNEIDEQDVANVRLTLTMS------------- 60
MQ++D L KK+H LG +P DM+++ W+ +D Q + +RLTL+ S
Sbjct: 163 MQIEDYLYGKKLHLPLLGRKPDDMSNEDWSLLDRQVLGVIRLTLSRSVAHNVGKEKTMAD 222
Query: 61 -----------------------YFNIHMEEGTSMNSHINELTDILNKLEWMGIKIDEEV 120
F + M EGT + H+NE I+N+L +GI+ D+EV
Sbjct: 223 LMKALSDMYEQPSANNKVHLMYKLFYLRMAEGTPVIQHLNEFNTIINQLASVGIEFDDEV 282
Query: 121 KAMRLLTSLPDSWETMKTAVSNSLGDNSLKFSAICDASLSEEAR-RKLGKISASTS--GA 163
+A+ L LP SWE M+TA+SNS G +K+ I D LSEE R R G+ S S+S
Sbjct: 283 RALIALAQLPKSWEAMRTAISNSYGKTKMKYQEIRDHILSEEVRIRDTGEASTSSSALNL 342
BLAST of Moc11g15270 vs. NCBI nr
Match:
KAG7593230.1 (Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa])
HSP 1 Score: 100.1 bits (248), Expect = 1.8e-17
Identity = 69/201 (34.33%), Postives = 104/201 (51.74%), Query Frame = 0
Query: 1 MQVKDLLMCKKIHETLGERPTDMTDKAWNEIDEQDVANVRLTLTMS-------------- 60
MQ++D L KK+H+ L +P M + W+ +D Q + +RLTL+ +
Sbjct: 24 MQIEDYLYGKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSKNVAHNVAKEKTTEGL 83
Query: 61 ----------------------YFNIHMEEGTSMNSHINELTDILNKLEWMGIKIDEEVK 120
F++ MEEG + +H+NE I+N+L + I+ D+EV+
Sbjct: 84 MKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSSVEIEFDDEVR 143
Query: 121 AMRLLTSLPDSWETMKTAVSNSLGDNSLKFSAICDASLSEEARR-KLGKISASTS-GAEN 163
A+ LL SLP+SWE M+ AVSNS+G+ LKF + D L EE RR G+ S S++ EN
Sbjct: 144 ALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRRIDTGETSTSSAFNVEN 203
BLAST of Moc11g15270 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 43/167 (25.75%), Postives = 78/167 (46.71%), Query Frame = 0
Query: 2 QVKDLLMCKKIHETL---GERPTDMTDKAWNEIDEQDVANVRLTLTMSYFN--------- 61
+++DLL+ + +H+ L ++P M + W ++DE+ + +RL L+ N
Sbjct: 23 RMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTAR 82
Query: 62 ---------------------------IHMEEGTSMNSHINELTDILNKLEWMGIKIDEE 121
+HM EGT+ SH+N ++ +L +G+KI+EE
Sbjct: 83 GIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEE 142
Query: 122 VKAMRLLTSLPDSWETMKTAVSNSLGDNSLKFSAICDASLSEEARRK 130
KA+ LL SLP S++ + T + + G +++ + A L E RK
Sbjct: 143 DKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEKMRK 187
BLAST of Moc11g15270 vs. ExPASy TrEMBL
Match:
A0A2N9GTI4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30874 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 2.1e-19
Identity = 66/177 (37.29%), Postives = 96/177 (54.24%), Query Frame = 0
Query: 1 MQVKDLLMCKKIH-ETLGERPTDMTDKAWNEIDEQD-----------------VANVRLT 60
MQ++D L KK+H LGE+P DM D W +D Q+ AN ++
Sbjct: 24 MQIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQEKTTAELMTALCGMYEKPSANNKVH 83
Query: 61 LTMSYFNIHMEEGTSMNSHINELTDILNKLEWMGIKIDEEVKAMRLLTSLPDSWETMKTA 120
L FN+ M EGT++ H+NE I N+L + I+ D+E++A+ +L SLP+SWE M+ A
Sbjct: 84 LMKKLFNLKMAEGTAVAQHLNEFNTITNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMA 143
Query: 121 VSNSLGDNSLKFSAICDASLSEEARRKLGKISASTSGAENRIKSTLVAQYKGKGKMR 160
VSNS G LK++ I D L EE RR+ +G + S L + +G+GK R
Sbjct: 144 VSNSAGKGKLKYNDIRDLILGEEVRRR-------DAGETSSSGSALNLEARGRGKDR 193
BLAST of Moc11g15270 vs. ExPASy TrEMBL
Match:
A0A2N9HHD8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39035 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 2.1e-19
Identity = 66/177 (37.29%), Postives = 96/177 (54.24%), Query Frame = 0
Query: 1 MQVKDLLMCKKIH-ETLGERPTDMTDKAWNEIDEQD-----------------VANVRLT 60
MQ++D L KK+H LGE+P DM D W +D Q+ AN ++
Sbjct: 24 MQIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQEKTTAELMTALCGMYEKPSANNKVH 83
Query: 61 LTMSYFNIHMEEGTSMNSHINELTDILNKLEWMGIKIDEEVKAMRLLTSLPDSWETMKTA 120
L FN+ M EGT++ H+NE I N+L + I+ D+E++A+ +L SLP+SWE M+ A
Sbjct: 84 LMKKLFNLKMAEGTAVAQHLNEFNTITNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMA 143
Query: 121 VSNSLGDNSLKFSAICDASLSEEARRKLGKISASTSGAENRIKSTLVAQYKGKGKMR 160
VSNS G LK++ I D L EE RR+ +G + S L + +G+GK R
Sbjct: 144 VSNSAGKGKLKYNDIRDLILGEEVRRR-------DAGETSSSGSALNLEARGRGKDR 193
BLAST of Moc11g15270 vs. ExPASy TrEMBL
Match:
A0A2N9EUG1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6315 PE=4 SV=1)
HSP 1 Score: 104.8 bits (260), Expect = 3.6e-19
Identity = 62/160 (38.75%), Postives = 90/160 (56.25%), Query Frame = 0
Query: 1 MQVKDLLMCKKIH-ETLGERPTDMTDKAWNEIDEQD-----------------VANVRLT 60
MQ++D L KK+H LGE+P DM D W +D Q+ AN ++
Sbjct: 24 MQIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQEKTTAELMTALCGMYEKPSANNKVH 83
Query: 61 LTMSYFNIHMEEGTSMNSHINELTDILNKLEWMGIKIDEEVKAMRLLTSLPDSWETMKTA 120
L FN+ M EGT++ H+NE I N+L + I+ D+E++A+ +L SLP+SWE M+ A
Sbjct: 84 LMKKLFNLKMAEGTAVAQHLNEFNTITNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMA 143
Query: 121 VSNSLGDNSLKFSAICDASLSEEARRKLGKISASTSGAEN 143
VSNS G LK++ I D L EE RR+ ++S+ A N
Sbjct: 144 VSNSAGKGKLKYNDIRDLILGEEVRRRDAGETSSSGSALN 183
BLAST of Moc11g15270 vs. ExPASy TrEMBL
Match:
A0A484N9U9 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS39927 PE=4 SV=1)
HSP 1 Score: 102.4 bits (254), Expect = 1.8e-18
Identity = 65/169 (38.46%), Postives = 97/169 (57.40%), Query Frame = 0
Query: 1 MQVKDLLMCKKIHETLGERPTDMTDKAWNEIDEQDVANVRLTLTMSY-FNI--------- 60
MQ++DLL+ K + LG++P M+D W +D + ++ +RL+LT + FNI
Sbjct: 1 MQIEDLLVQKDLDAALGDKPEKMSDADWAGLDWKAMSVIRLSLTKNVAFNILKEKELVNT 60
Query: 61 HMEEGTSMNSHINELTDILNKLEWMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNSLGDN 120
M EGTS+ HIN+L IL +L +GIK D+EV+A+ LL+SLP+SW TAV+ S+G +
Sbjct: 61 RMREGTSVTEHINKLNSILTRLASVGIKFDDEVQALLLLSSLPNSWSGTVTAVTGSVGPD 120
Query: 121 SLKFSAICDASLSEEARRK-------------LGKISASTSGAENRIKS 147
F I D L E+ RRK G+ ++ SG+ NR +S
Sbjct: 121 GFTFDQIRDLILGEDVRRKSSGESSGELLHVGRGRRNSRGSGSRNRQRS 169
BLAST of Moc11g15270 vs. ExPASy TrEMBL
Match:
A0A438G4K3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_572 PE=4 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 3.9e-18
Identity = 63/164 (38.41%), Postives = 93/164 (56.71%), Query Frame = 0
Query: 1 MQVKDLLMCKKIH-ETLGERPTDMTDKAWNEIDEQDVANVRLTLTMSYFNIHMEEGTSMN 60
MQ++D L +K+H LG +P M + W +D Q AN ++ L FN+ M E S+
Sbjct: 24 MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQPSANNKVHLMKKLFNLKMAENASVA 83
Query: 61 SHINELTDILNKLEWMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNSLGDNSLKFSAICD 120
H+NE I N+L + I D+E++A+ +L SLP+SWE M+ AVSNS G LK++ I D
Sbjct: 84 QHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRD 143
Query: 121 ASLSEEARRKLGKISASTSGAENRIKSTLVAQYKGKGKMRYGKQ 164
L+EE RR + + TSG+ S L + +G+G R Q
Sbjct: 144 LILAEEIRR---RDAGETSGS----GSALNLETRGRGNNRNSNQ 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
VFQ98151.1 | 3.7e-18 | 38.46 | unnamed protein product [Cuscuta campestris] | [more] |
RVW62858.1 | 8.2e-18 | 38.22 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW67125.1 | 8.2e-18 | 38.41 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
KAG7968649.1 | 1.1e-17 | 34.16 | hypothetical protein I3843_08G165400 [Carya illinoinensis] | [more] |
KAG7593230.1 | 1.8e-17 | 34.33 | Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa] | [more] |
Match Name | E-value | Identity | Description | |
P10978 | 1.2e-08 | 25.75 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A2N9GTI4 | 2.1e-19 | 37.29 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30874 PE=4 SV=1 | [more] |
A0A2N9HHD8 | 2.1e-19 | 37.29 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39035 PE=4 SV=1 | [more] |
A0A2N9EUG1 | 3.6e-19 | 38.75 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6315 PE=4 SV=1 | [more] |
A0A484N9U9 | 1.8e-18 | 38.46 | Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS39927 PE=4 ... | [more] |
A0A438G4K3 | 3.9e-18 | 38.41 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
Match Name | E-value | Identity | Description | |