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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGCCTATCCAGATTGTCCCAATCACTCAGACAAAAGAGTCAGTTCCTATTATTTCCTATAATAATCAGGATGATCAAGCCAACCCAAATCGAAGTGACAAGCAACGTAAGACTCTTGTTTATTTTTGGCGACAAACGATTCAAAGAGGAGTGGAGCCACCACAACCTCAATAGCAAAGTCATGAATCCATCTCGTCTTTAGATACTGAACAATTTACCATTGCCTCAAGATAATACTAATGATCTTGTACTCAGCATCCAATTGCTCGATGTGTTGGTTATGGTTATTTATCTTTAGCAGTTCAGACCTTGGCTCTCAATCTAGAAACCAATGAGGTGCCAAAATCAATTCAACAGGGTATGAGTGATCCACGGTGGAAAAATGTGATAGATGATGAAATGAAGACTTTGAAGCTTAATGATACGTGGTGTCGCAAGGCTTAA mRNA sequence ATGCCTATCCAGATTGTCCCAATCACTCAGACAAAAGAGTCAGTTCCTATTATTTCCTATAATAATCAGGATGATCAAGCCAACCCAAATCGAAGTGACAAGCAACTTCAGACCTTGGCTCTCAATCTAGAAACCAATGAGGTGCCAAAATCAATTCAACAGGGTATGAGTGATCCACGGTGGAAAAATGTGATAGATGATGAAATGAAGACTTTGAAGCTTAATGATACGTGGTGTCGCAAGGCTTAA Coding sequence (CDS) ATGCCTATCCAGATTGTCCCAATCACTCAGACAAAAGAGTCAGTTCCTATTATTTCCTATAATAATCAGGATGATCAAGCCAACCCAAATCGAAGTGACAAGCAACTTCAGACCTTGGCTCTCAATCTAGAAACCAATGAGGTGCCAAAATCAATTCAACAGGGTATGAGTGATCCACGGTGGAAAAATGTGATAGATGATGAAATGAAGACTTTGAAGCTTAATGATACGTGGTGTCGCAAGGCTTAA Protein sequence MPIQIVPITQTKESVPIISYNNQDDQANPNRSDKQLQTLALNLETNEVPKSIQQGMSDPRWKNVIDDEMKTLKLNDTWCRKA
Homology
BLAST of Moc11g15200 vs. NCBI nr
Match: GEX84758.1 (putative RNA-directed DNA polymerase [Tanacetum cinerariifolium]) HSP 1 Score: 57.4 bits (137), Expect = 6.8e-05 Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 0
Query: 21 NNQDDQANPNR---SDKQLQTLALNLETNEVPKSIQQGMSDPRWKNVIDDEMKTLKLNDT 80
NN DD +P + + + LA++L + E+P SI+Q + +WKN +DDEMK LK N+T
Sbjct: 48 NNADDIQDPTSEILQEHEKEALAVSLCSEEIPSSIEQALKSEKWKNTMDDEMKALKKNET 107
Query: 81 WCRKA 83
W + A
Sbjct: 108 WDQSA 112
BLAST of Moc11g15200 vs. NCBI nr
Match: XP_022139695.1 (uncharacterized protein LOC111010542 [Momordica charantia]) HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04 Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 0
Query: 36 LQTLALNLETNEVPKSIQQGMSDPRWKNVIDDEMK 71
+QTLA +LE NEVPKSIQ+ +S+P+WKN++DDEMK
Sbjct: 175 VQTLAPSLEANEVPKSIQEAVSNPQWKNMVDDEMK 209
BLAST of Moc11g15200 vs. NCBI nr
Match: GEY05871.1 (putative ribonuclease H-like domain-containing protein [Tanacetum cinerariifolium]) HSP 1 Score: 53.9 bits (128), Expect = 7.5e-04 Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 0
Query: 37 QTLALNLETNEVPKSIQQGMSDPRWKNVIDDEMKTLKLNDTWCRKA 83
+ LA++L + E+P SI+Q + +WKN +DDEMK LK N+TW + A
Sbjct: 113 KALAVSLCSEEIPSSIEQALKSEKWKNTMDDEMKALKKNETWDQSA 158
BLAST of Moc11g15200 vs. ExPASy TrEMBL
Match: A0A6J1CD10 (uncharacterized protein LOC111010542 OS=Momordica charantia OX=3673 GN=LOC111010542 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 7.3e-05 Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 0
Query: 36 LQTLALNLETNEVPKSIQQGMSDPRWKNVIDDEMK 71
+QTLA +LE NEVPKSIQ+ +S+P+WKN++DDEMK
Sbjct: 175 VQTLAPSLEANEVPKSIQEAVSNPQWKNMVDDEMK 209
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| GEX84758.1 | 6.8e-05 | 41.54 | putative RNA-directed DNA polymerase [Tanacetum cinerariifolium] | [more] |
| XP_022139695.1 | 1.5e-04 | 68.57 | uncharacterized protein LOC111010542 [Momordica charantia] | [more] |
| GEY05871.1 | 7.5e-04 | 47.83 | putative ribonuclease H-like domain-containing protein [Tanacetum cinerariifoliu... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1CD10 | 7.3e-05 | 68.57 | uncharacterized protein LOC111010542 OS=Momordica charantia OX=3673 GN=LOC111010... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
|
