Moc11g15130 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g15130
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Autotransporter domain-containing protein
Location	chr11: 11305216 .. 11305741 (-)
RNA-Seq Expression	Moc11g15130
Synteny	Moc11g15130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGGTCTTTCTTTAATAACGATAGCAAATGATCCATGTGAATCTTCTTTTGCTTTATTATGACTTTTACCTGCAAAACCGACATATATATTCAGTTTTGTATCTCTTTTAAGTAACAAGCTGACCTTTACTTAGTATAAGGCATATTGACCTAATAGAAGTAGGGAGATGGCGGGGGAGGAGGCGACCTCCTTGGTCCTGGTAGCGGCACTCGGGGTCCTGGCAACGGTACCCTCGGTCCTGGCAGTGGCACTCGAGGTCCTGGCAGTGGTACCCTCGGTCCTGGCAGCGGTACCCTCGGTCCTGGTAGCGGCACCCTCGGTCCTGGTAGCGGCACTCTGGGGTCTGGTAGCGGCACCCGAGGTCCTGGTAGCGGCACTCGGGGTCCTGGTAGTGGTACCCTCGGTCCTGGTAGCGGCACTCTAGGGTCTGGTAGCGGCACCCGAGGTCCTGGTAGCGGCACTCGGGGTCCTGGTAGCGGTACCCTCGGAGACCTCCTTGGTGACGGTGGAGTAGAATAA

mRNA sequence

ATGAAGGAGGGAGATGGCGGGGGAGGAGGCGACCTCCTTGGTCCTGGTAGCGGCACTCGGGGTCCTGGCAACGGTACCCTCGGTCCTGGCAGTGGCACTCGAGGTCCTGGCAGTGGTACCCTCGGTCCTGGCAGCGGTACCCTCGGTCCTGGTAGCGGCACCCTCGGTCCTGGTAGCGGCACTCTGGGGTCTGGTAGCGGCACCCGAGGTCCTGGTAGCGGCACTCGGGGTCCTGGTAGTGGTACCCTCGGTCCTGGTAGCGGCACTCTAGGGTCTGGTAGCGGCACCCGAGGTCCTGGTAGCGGCACTCGGGGTCCTGGTAGCGGTACCCTCGGAGACCTCCTTGGTGACGGTGGAGTAGAATAA

Coding sequence (CDS)

ATGAAGGAGGGAGATGGCGGGGGAGGAGGCGACCTCCTTGGTCCTGGTAGCGGCACTCGGGGTCCTGGCAACGGTACCCTCGGTCCTGGCAGTGGCACTCGAGGTCCTGGCAGTGGTACCCTCGGTCCTGGCAGCGGTACCCTCGGTCCTGGTAGCGGCACCCTCGGTCCTGGTAGCGGCACTCTGGGGTCTGGTAGCGGCACCCGAGGTCCTGGTAGCGGCACTCGGGGTCCTGGTAGTGGTACCCTCGGTCCTGGTAGCGGCACTCTAGGGTCTGGTAGCGGCACCCGAGGTCCTGGTAGCGGCACTCGGGGTCCTGGTAGCGGTACCCTCGGAGACCTCCTTGGTGACGGTGGAGTAGAATAA

Protein sequence

MKEGDGGGGGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLGDLLGDGGVE

Homology

[Close]

BLAST of Moc11g15130 vs. NCBI nr
Match: WP_175205136.1 (autotransporter outer membrane beta-barrel domain-containing protein [Achromobacter anxifer] >CAB3820697.1 hypothetical protein LMG26858_00179 [Achromobacter anxifer])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 71/110 (64.55%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 7   GGGGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGS 66
           GGG    G GSGT G G+GT G GSGT G GSGT G GSGT G GSGT G GSGT G+GS
Sbjct: 540 GGGSGTTGSGSGTTGNGSGTTGNGSGTTGSGSGTTGSGSGTTGSGSGTTGSGSGTTGNGS 599

Query: 67  GTRGPGSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLGDLLG 117
           GT G GSGT G GSGT G GSGT G+GSGT G GS T G GS  +G  +G
Sbjct: 600 GTTGSGSGTTGSGSGTTGSGSGTTGNGSGTTGSGSTTTGGGSSLVGSGIG 649

[Close]

BLAST of Moc11g15130 vs. NCBI nr
Match: WP_176088726.1 (autotransporter outer membrane beta-barrel domain-containing protein [Achromobacter anxifer] >CAB5513175.1 hypothetical protein LMG26857_02452 [Achromobacter anxifer])

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-15
Identity = 68/103 (66.02%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 14  GPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGPGS 73
           G GSGT G G+GT G GSGT G GSGT G GSGT G G+GT G GSGT GSGSGT G GS
Sbjct: 540 GGGSGTTGSGSGTTGNGSGTTGSGSGTTGSGSGTTGSGTGTTGSGSGTTGSGSGTTGSGS 599

Query: 74  GTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLGDLLG 117
           GT G GSGT G GSGT G+GSGT G GS T G GS  +G  +G
Sbjct: 600 GTTGSGSGTTGSGSGTTGNGSGTTGSGSTTTGGGSSLVGSGIG 642

[Close]

BLAST of Moc11g15130 vs. NCBI nr
Match: XP_032834961.1 (GTP-binding protein RAD-like [Petromyzon marinus])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-14
Identity = 72/105 (68.57%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 7   GGGGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGS 66
           G G   L P SGT GP + T GP  GTRGP SGT GP S T GPGS T GP SGT G GS
Sbjct: 49  GPGSGSLRPESGTSGPESATRGPEPGTRGPESGTRGPESVTRGPGSVTRGPDSGTRGPGS 108

Query: 67  GTRGPGSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTL 112
           GTRGP SGTRGP SGT GP SGT G  SGTRGP SGTRGP SG+L
Sbjct: 109 GTRGPESGTRGPESGTPGPESGTRGPESGTRGPESGTRGPESGSL 153

[Close]

BLAST of Moc11g15130 vs. NCBI nr
Match: PLW16813.1 (hypothetical protein PCANC_15375 [Puccinia coronata f. sp. avenae])

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-11
Identity = 69/108 (63.89%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 12  LLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGP 71
           LLG GSGT G G+GT G GSGT G GSGT G GSG  G GSGT G GSGT GSGSG  G 
Sbjct: 30  LLGSGSGTYGSGSGTSGSGSGTYGSGSGTYGSGSGIYGSGSGTYGSGSGTYGSGSGGYGS 89

Query: 72  GSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLGDLLGDGG 120
           GSG+ G GS   G GSG  GSGSG  G GSGT G GSG  G   G GG
Sbjct: 90  GSGSYGSGSEGSGSGSGAYGSGSGGYGSGSGTYGSGSGGYGS--GSGG 135

[Close]

BLAST of Moc11g15130 vs. NCBI nr
Match: CDJ86238.1 (unnamed protein product [Haemonchus contortus])

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-11
Identity = 53/104 (50.96%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 9   GGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGT 68
           GG  +GP +G  GP  G +GPG G  GPG G +GPG G +GPG G +GPG G +G  +G 
Sbjct: 197 GGGPMGPRAGPMGPRGGPMGPGGGPMGPGGGPMGPGGGPMGPGGGPMGPGGGPMGPRAGP 256

Query: 69  RGPGSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLG 113
            GPG G  GP  G +GPG G +G G G  GPG G  GPG G +G
Sbjct: 257 MGPGGGPMGPRGGPMGPGGGPMGPGGGPMGPGGGPMGPGGGPMG 300

[Close]

BLAST of Moc11g15130 vs. ExPASy TrEMBL
Match: A0A6S7C9H9 (Autotransporter domain-containing protein OS=Achromobacter anxifer OX=1287737 GN=LMG26858_00179 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.1e-16
Identity = 71/110 (64.55%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 7   GGGGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGS 66
           GGG    G GSGT G G+GT G GSGT G GSGT G GSGT G GSGT G GSGT G+GS
Sbjct: 540 GGGSGTTGSGSGTTGNGSGTTGNGSGTTGSGSGTTGSGSGTTGSGSGTTGSGSGTTGNGS 599

Query: 67  GTRGPGSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLGDLLG 117
           GT G GSGT G GSGT G GSGT G+GSGT G GS T G GS  +G  +G
Sbjct: 600 GTTGSGSGTTGSGSGTTGSGSGTTGNGSGTTGSGSTTTGGGSSLVGSGIG 649

[Close]

BLAST of Moc11g15130 vs. ExPASy TrEMBL
Match: A0A2N5SUB7 (Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCANC_15375 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.4e-12
Identity = 69/108 (63.89%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 12  LLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGP 71
           LLG GSGT G G+GT G GSGT G GSGT G GSG  G GSGT G GSGT GSGSG  G 
Sbjct: 30  LLGSGSGTYGSGSGTSGSGSGTYGSGSGTYGSGSGIYGSGSGTYGSGSGTYGSGSGGYGS 89

Query: 72  GSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLGDLLGDGG 120
           GSG+ G GS   G GSG  GSGSG  G GSGT G GSG  G   G GG
Sbjct: 90  GSGSYGSGSEGSGSGSGAYGSGSGGYGSGSGTYGSGSGGYGS--GSGG 135

[Close]

BLAST of Moc11g15130 vs. ExPASy TrEMBL
Match: A0A2N5VXC2 (Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCANC_05358 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.5e-11
Identity = 69/112 (61.61%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 12  LLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGP 71
           LLG GSGT G G+GT G GSGT G GSGT G GSG  G GSGT G GSGT GSGSG  G 
Sbjct: 30  LLGSGSGTYGSGSGTSGSGSGTYGSGSGTYGSGSGIYGSGSGTYGSGSGTYGSGSGGYGS 89

Query: 72  GSGTRGPGSGT----LGPGSGTLGSGSGTRGPGSGTRGPGSGTLGDLLGDGG 120
           GSG  G GSG+     G GSG  GSGSG+ G GSG  G GSG  G   G GG
Sbjct: 90  GSGAYGSGSGSGGYGSGSGSGGYGSGSGSYGSGSGGSGSGSGAYGS--GSGG 139

[Close]

BLAST of Moc11g15130 vs. ExPASy TrEMBL
Match: A0A2N5V1C8 (Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCASD_09394 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.5e-11
Identity = 69/112 (61.61%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 12  LLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGP 71
           LLG GSGT G G+GT G GSGT G GSGT G GSG  G GSGT G GSGT GSGSG  G 
Sbjct: 30  LLGSGSGTYGSGSGTSGSGSGTYGSGSGTYGSGSGIYGSGSGTYGSGSGTYGSGSGGYGS 89

Query: 72  GSGTRGPGSGT----LGPGSGTLGSGSGTRGPGSGTRGPGSGTLGDLLGDGG 120
           GSG  G GSG+     G GSG  GSGSG+ G GSG  G GSG  G   G GG
Sbjct: 90  GSGAYGSGSGSGGYGSGSGSGGYGSGSGSYGSGSGGSGSGSGAYGS--GSGG 139

[Close]

BLAST of Moc11g15130 vs. ExPASy TrEMBL
Match: A0A7I4YKB6 (Uncharacterized protein OS=Haemonchus contortus OX=6289 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.9e-11
Identity = 59/120 (49.17%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 4   GDGGG----GGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGS 63
           G GGG    GG  +GPG G  GPG G +GPG G  GPG G +GPG G +GP  G +GPG 
Sbjct: 160 GPGGGPMGPGGGPMGPGGGPMGPGGGPMGPGGGPMGPGGGPMGPGGGPMGPRGGPMGPGG 219

Query: 64  GTLGSGSGTRGPGSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLGDLLGDGG 120
           G +G G G   PG G  GP  G +GPG G +G   G  GPG G  GPG G +G   G  G
Sbjct: 220 GPMGPGGGPMEPGGGPMGPRGGLMGPGGGPMGPRGGPMGPGGGPMGPGGGPMGSWDGPFG 279

[Close]

BLAST of Moc11g15130 vs. TAIR 10
Match: AT2G04170.1 (TRAF-like family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.1e-04
Identity = 64/129 (49.61%), Postives = 65/129 (50.39%), Query Frame = 0


Query: 6   GGGGGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSG 65
           GG GG   GPG G RG G    GPG G  GPG G  GPG G  GPG G  GPG G    G
Sbjct: 4   GGCGG---GPGRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFG----G 63

Query: 66  SGTRGPGSGTRGPG--SGTLGPGSGTLGSGSGTRGPGSGTRGP------------GSGTL 121
            G RGPG G RGPG  SG  GP  G  G G    GP SG RGP            GSGT 
Sbjct: 64  RGPRGPGFGPRGPGPWSGPRGPRPG--GGGGPGPGPWSGPRGPRPGGGGGPGSGCGSGTG 123

[Close]

BLAST of Moc11g15130 vs. TAIR 10
Match: AT2G04170.2 (TRAF-like family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.1e-04
Identity = 64/129 (49.61%), Postives = 65/129 (50.39%), Query Frame = 0


Query: 6   GGGGGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSG 65
           GG GG   GPG G RG G    GPG G  GPG G  GPG G  GPG G  GPG G    G
Sbjct: 4   GGCGG---GPGRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFG----G 63

Query: 66  SGTRGPGSGTRGPG--SGTLGPGSGTLGSGSGTRGPGSGTRGP------------GSGTL 121
            G RGPG G RGPG  SG  GP  G  G G    GP SG RGP            GSGT 
Sbjct: 64  RGPRGPGFGPRGPGPWSGPRGPRPG--GGGGPGPGPWSGPRGPRPGGGGGPGSGCGSGTG 123

[Close]

BLAST of Moc11g15130 vs. TAIR 10
Match: AT2G04170.5 (TRAF-like family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.1e-04
Identity = 64/129 (49.61%), Postives = 65/129 (50.39%), Query Frame = 0


Query: 6   GGGGGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSG 65
           GG GG   GPG G RG G    GPG G  GPG G  GPG G  GPG G  GPG G    G
Sbjct: 4   GGCGG---GPGRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFG----G 63

Query: 66  SGTRGPGSGTRGPG--SGTLGPGSGTLGSGSGTRGPGSGTRGP------------GSGTL 121
            G RGPG G RGPG  SG  GP  G  G G    GP SG RGP            GSGT 
Sbjct: 64  RGPRGPGFGPRGPGPWSGPRGPRPG--GGGGPGPGPWSGPRGPRPGGGGGPGSGCGSGTG 123

The following BLAST results are available for this feature:

BLAST of Moc11g15130 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_175205136.1	1.3e-15	64.55	autotransporter outer membrane beta-barrel domain-containing protein [Achromobac...	[more]
WP_176088726.1	8.2e-15	66.02	autotransporter outer membrane beta-barrel domain-containing protein [Achromobac...	[more]
XP_032834961.1	1.1e-14	68.57	GTP-binding protein RAD-like [Petromyzon marinus]	[more]
PLW16813.1	1.1e-11	63.89	hypothetical protein PCANC_15375 [Puccinia coronata f. sp. avenae]	[more]
CDJ86238.1	1.1e-11	50.96	unnamed protein product [Haemonchus contortus]	[more]

BLAST of Moc11g15130 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g15130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6S7C9H9	6.1e-16	64.55	Autotransporter domain-containing protein OS=Achromobacter anxifer OX=1287737 GN...	[more]
A0A2N5SUB7	5.4e-12	63.89	Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCANC_15...	[more]
A0A2N5VXC2	4.5e-11	61.61	Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCANC_05...	[more]
A0A2N5V1C8	4.5e-11	61.61	Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCASD_09...	[more]
A0A7I4YKB6	5.9e-11	49.17	Uncharacterized protein OS=Haemonchus contortus OX=6289 PE=4 SV=1	[more]

BLAST of Moc11g15130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04170.1	4.1e-04	49.61	TRAF-like family protein	[more]
AT2G04170.2	4.1e-04	49.61	TRAF-like family protein	[more]
AT2G04170.5	4.1e-04	49.61	TRAF-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..121
None	No IPR available	PANTHER	PTHR35846	PROTEIN CBG05131	coord: 14..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g15130.1	Moc11g15130.1	mRNA