Moc11g14310 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g14310
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr11: 10631279 .. 10633647 (-)
RNA-Seq Expression	Moc11g14310
Synteny	Moc11g14310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCTGATGAGAGCCATCGGTGCTTCGAAGAGGAGAGCCTGAAAGAAGCGGCTGATCACTTAGATGAGGCAAGACCGAGCCCTGATCGTCAACTTAATCCGACCACCCTTGACGGGGGAGAACCAGTGTCAGGTCCGAATAAAGCGACAGACCTCTCGGGAAAGGCGAGGCCGAGCCCTGGTTGTCGACTTAATCCCACCACCCTTGATAAGGGAGAACCAGTGGCGGGCCTGATTAAAGCGACAGATCTTTCGGGAGAGGCAAGGCCGAGCCCTGGTCATCGACTTAATTCGACCACCTTTGATAGGGGAGAACCGGCTGAAGAGGTAGAATCTGTCCCTCTGACAGCCGAAGATCGACGGGTCAACATCGGAACCAAGTTGGGGAGTGAGGAAAGAGAAAGCCTTAAAAACTTCCTCAGAAGCAACGCTGATGTGTTCGCATGGTCACCGGAGGACATGCCGGGAATCGACCGAGGAGTTATGGTACATCGACTCAACGTCGACGAGAGCTGTAAGCCAGTGAAACAGAAGCGTCGCGCGTTCAACCAAGAAAGGAACGACATTGTAGCTGAACAGGTGGATGAGCTACTGAAAACAGGCTTCATTCGGGAAGTACATTATCCCCAGTGGATATCCAACGTGGTGCTGGTAAAGAAGCCAAACGATAAATGGAGAATGTGCATCGACTTCACGGATCTAAATAAGGCCTGTCCAAAGGATTCTTTTCCTTTGCCTCGAATAGATCAACTGGTTGATGCCACTGCAGGACATGAAAGCTTGAGTTTCATGGATGCCCACTCTGGATATAATCAAATCAAGATGCATGTACCGGATCACGAGAAAACTTCTTTTGTCACGAGTCGAGGCTTGTATTGCTACACCGTGATGCCGTTTGGATTAAAGAATGCAGGTGCAACCTACCAACGAATGGTGAATCGGATGTTTGCAGCCTTAATCGGCAAAAATATGGAAGTCTACGTAGACGACATGCTGGTAAAGAGTCGAAAGAACGAGCGACACGAGGAGGATTTGGCAGAAGCGTTCGACATCTTGCGAAAGTACAAGATGAAGTTGAATCCCACCAAATGCACGTTTGGAGTGACTTCAGGCAAGTTCCTGGGATTTTTAGTGCACCAAAGGAGAATCGAAGCCAATCCAGATAAGATCAAAGCTGTTCTGGAGATGGATCCACCTAAAACTCTAAAGCAGCTGCAGGGACTCAATAGAAGGATAGCAACACTCAACATATTCGTTAGCCGTTCCACTGACAAGTGCCTACCATTCTTCAAAATCTTAAGGAAGAAAGGACAATTTGAATGAACGGAAGAGTACGAGGCTGCCTTTAAGGAGCTGAAACAGTACCTAGGGGCAGCTCCACTCCTCGCAAAGCCGATCGTGGGTGATGAGCTCTACTTATACTTAGCTGTATCCAGCACTGTGGTGAGTTCCGCGTTAATAAAGGAAGAAGATGGACGACAATCCCCAATTTACTACACAAGCAAAGCAATGGTAGATGCAGAACTTAGATACCCACCAATGGAGAAGCTGGCATTGGCACTGGTCACTTCAGCTCGGAGACTACGCCCGTATTTCCAAGCTCACAAAATAATGGTCCTCACCAACTTTCCCTTACGACAGATCTTACAAAAGCCAGACACTTCTGGACGACTGGTAAAGTGGGCTGTAGAGCTCAGCGAGTACAATATTCACTATAAGCCAAGAACTGCCATGAAAGGGCAGGTTGTGGCAGACTTCATAGCGGAATTAACACCAACAGAGCCTCAAGTATATAGTATCGACCCACAAGTGGTTGAGGAAGAACAACTCTGGACACTCTACGTAGATGGGTCCTCAAATTTTCGGGGATGCAGGGCAAGACTCCTACTAATCTCTCCAGATAAAGAAAGATTCGAATATGCGCTGCGATTCAACTTTCATGCATCTAACAACGAAGCCGAGTACGAAGCTCTACTAGCAGGACTAAAAGTGGCCAGGTACGTTGGGGTCAGGAACATACTAATACTTAGTGATTCACAGCTGATTATGGGTCAGGTGAAAGAGGAGTTCCAGACTAGAGAACCGCGAATGGCGAAATACCTTTCACAGGTAAGAAACGAGCTCGACCAGTTCTCAAAATATGAGATTCGACAAATTCCACGTGTTCAAAACGTCAACGCCGATGCGTTAGCTCGACTAGCTGCGGCTTATGAAACCGACTTAGGTAGAACTGTACCGGTCGAGATTCTACCCGAGCCAAGCATAGAAGCTCAGGAAGCCATGGATATCGACAATCAAGGGCAACCAGAAGAAAACTGGAAGAGCCATTTGATCAAATATTTGAAAGATGGGATCCTGCCTACTGA

mRNA sequence

ATGAATCCTGATGAGAGCCATCGGTGCTTCGAAGAGGAGAGCCTGAAAGAAGCGGCTGATCACTTAGATGAGGCAAGACCGAGCCCTGATCGTCAACTTAATCCGACCACCCTTGACGGGGGAGAACCAGTGTCAGGTCCGAATAAAGCGACAGACCTCTCGGGAAAGGCGAGGCCGAGCCCTGGTTGTCGACTTAATCCCACCACCCTTGATAAGGGAGAACCAGTGGCGGGCCTGATTAAAGCGACAGATCTTTCGGGAGAGGCAAGGCCGAGCCCTGGTCATCGACTTAATTCGACCACCTTTGATAGGGGAGAACCGGCTGAAGAGGTAGAATCTGTCCCTCTGACAGCCGAAGATCGACGGGTCAACATCGGAACCAAGTTGGGGAGAAGCCATGGATATCGACAATCAAGGGCAACCAGAAGAAAACTGGAAGAGCCATTTGATCAAATATTTGAAAGATGGGATCCTGCCTACTGA

Coding sequence (CDS)

ATGAATCCTGATGAGAGCCATCGGTGCTTCGAAGAGGAGAGCCTGAAAGAAGCGGCTGATCACTTAGATGAGGCAAGACCGAGCCCTGATCGTCAACTTAATCCGACCACCCTTGACGGGGGAGAACCAGTGTCAGGTCCGAATAAAGCGACAGACCTCTCGGGAAAGGCGAGGCCGAGCCCTGGTTGTCGACTTAATCCCACCACCCTTGATAAGGGAGAACCAGTGGCGGGCCTGATTAAAGCGACAGATCTTTCGGGAGAGGCAAGGCCGAGCCCTGGTCATCGACTTAATTCGACCACCTTTGATAGGGGAGAACCGGCTGAAGAGGTAGAATCTGTCCCTCTGACAGCCGAAGATCGACGGGTCAACATCGGAACCAAGTTGGGGAGAAGCCATGGATATCGACAATCAAGGGCAACCAGAAGAAAACTGGAAGAGCCATTTGATCAAATATTTGAAAGATGGGATCCTGCCTACTGA

Protein sequence

MNPDESHRCFEEESLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGPNKATDLSGKARPSPGCRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTTFDRGEPAEEVESVPLTAEDRRVNIGTKLGRSHGYRQSRATRRKLEEPFDQIFERWDPAY

Homology

[Close]

BLAST of Moc11g14310 vs. NCBI nr
Match: XP_022156571.1 (uncharacterized protein LOC111023448 [Momordica charantia])

HSP 1 Score: 245.7 bits (626), Expect = 2.6e-61
Identity = 123/130 (94.62%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MNPDESHRCFEEESLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGPNKATDLSGKARPS 60
           MNPDESHRCFEE+SLK+AADHLDEARPSPDRQLNPTTLDGGEPVSG NKATDLSGKARPS
Sbjct: 1   MNPDESHRCFEEKSLKKAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPS 60

Query: 61  PGCRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTTFDRGEPAEEVESVPLTAED 120
           PG RLNPTTLDKG PVAGLIKATDLSG+ARPSPGHRLNSTT DRGEPAEEVESVPLTAED
Sbjct: 61  PGYRLNPTTLDKGGPVAGLIKATDLSGDARPSPGHRLNSTTLDRGEPAEEVESVPLTAED 120

Query: 121 RRVNIGTKLG 131
           RRVNIGTKLG
Sbjct: 121 RRVNIGTKLG 130

[Close]

BLAST of Moc11g14310 vs. NCBI nr
Match: XP_022156048.1 (uncharacterized protein LOC111023016 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 8.0e-18
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 73  GEPVAGLIKATDLSGEARPSPGHRLNSTTFDRGEPAEEVESVPLTAEDRRVNIGTKLG 131
           GEPV GL KATDLSGEARPSPGHRLNSTT DRG  AEEVESVPLT E++RVNIGTKLG
Sbjct: 33  GEPVTGLNKATDLSGEARPSPGHRLNSTTLDRGGSAEEVESVPLTVEEQRVNIGTKLG 90

[Close]

BLAST of Moc11g14310 vs. NCBI nr
Match: XP_022158042.1 (uncharacterized protein LOC111024621 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-16
Identity = 61/129 (47.29%), Postives = 73/129 (56.59%), Query Frame = 0


Query: 2   NPDESHRCFEEESLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGPNKATDLSGKARPSP 61
           NP E  +CFEEESL+ AA+ L E  PSPD Q NPTT D GEPV G               
Sbjct: 7   NP-EGQQCFEEESLEVAANGLGEICPSPDHQPNPTTFDKGEPVGG--------------- 66

Query: 62  GCRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTTFDRGEPAEEVESVPLTAEDR 121
              +    L  G+      +A D  GE   SP    + T FDRGEP +EVES+PLT++DR
Sbjct: 67  ---VESIPLTPGD------RAVDGLGEICSSPDQLPSPTIFDRGEPTKEVESIPLTSDDR 110

Query: 122 RVNIGTKLG 131
           RVNIGT+LG
Sbjct: 127 RVNIGTRLG 110

[Close]

BLAST of Moc11g14310 vs. ExPASy TrEMBL
Match: A0A6J1DVC6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.3e-61
Identity = 123/130 (94.62%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MNPDESHRCFEEESLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGPNKATDLSGKARPS 60
           MNPDESHRCFEE+SLK+AADHLDEARPSPDRQLNPTTLDGGEPVSG NKATDLSGKARPS
Sbjct: 1   MNPDESHRCFEEKSLKKAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPS 60

Query: 61  PGCRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTTFDRGEPAEEVESVPLTAED 120
           PG RLNPTTLDKG PVAGLIKATDLSG+ARPSPGHRLNSTT DRGEPAEEVESVPLTAED
Sbjct: 61  PGYRLNPTTLDKGGPVAGLIKATDLSGDARPSPGHRLNSTTLDRGEPAEEVESVPLTAED 120

Query: 121 RRVNIGTKLG 131
           RRVNIGTKLG
Sbjct: 121 RRVNIGTKLG 130

[Close]

BLAST of Moc11g14310 vs. ExPASy TrEMBL
Match: A0A6J1DPJ5 (uncharacterized protein LOC111023016 OS=Momordica charantia OX=3673 GN=LOC111023016 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.9e-18
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 73  GEPVAGLIKATDLSGEARPSPGHRLNSTTFDRGEPAEEVESVPLTAEDRRVNIGTKLG 131
           GEPV GL KATDLSGEARPSPGHRLNSTT DRG  AEEVESVPLT E++RVNIGTKLG
Sbjct: 33  GEPVTGLNKATDLSGEARPSPGHRLNSTTLDRGGSAEEVESVPLTVEEQRVNIGTKLG 90

[Close]

BLAST of Moc11g14310 vs. ExPASy TrEMBL
Match: A0A6J1DW49 (uncharacterized protein LOC111024621 OS=Momordica charantia OX=3673 GN=LOC111024621 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16
Identity = 61/129 (47.29%), Postives = 73/129 (56.59%), Query Frame = 0


Query: 2   NPDESHRCFEEESLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGPNKATDLSGKARPSP 61
           NP E  +CFEEESL+ AA+ L E  PSPD Q NPTT D GEPV G               
Sbjct: 7   NP-EGQQCFEEESLEVAANGLGEICPSPDHQPNPTTFDKGEPVGG--------------- 66

Query: 62  GCRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTTFDRGEPAEEVESVPLTAEDR 121
              +    L  G+      +A D  GE   SP    + T FDRGEP +EVES+PLT++DR
Sbjct: 67  ---VESIPLTPGD------RAVDGLGEICSSPDQLPSPTIFDRGEPTKEVESIPLTSDDR 110

Query: 122 RVNIGTKLG 131
           RVNIGT+LG
Sbjct: 127 RVNIGTRLG 110

The following BLAST results are available for this feature:

BLAST of Moc11g14310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156571.1	2.6e-61	94.62	uncharacterized protein LOC111023448 [Momordica charantia]	[more]
XP_022156048.1	8.0e-18	86.21	uncharacterized protein LOC111023016 [Momordica charantia]	[more]
XP_022158042.1	4.4e-16	47.29	uncharacterized protein LOC111024621 [Momordica charantia]	[more]

BLAST of Moc11g14310 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g14310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVC6	1.3e-61	94.62	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1	[more]
A0A6J1DPJ5	3.9e-18	86.21	uncharacterized protein LOC111023016 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DW49	2.1e-16	47.29	uncharacterized protein LOC111024621 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Moc11g14310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g14310.1	Moc11g14310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity