Moc11g14240 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g14240
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ty1-copia retrotransposon protein
Location	chr11: 10576932 .. 10577392 (+)
RNA-Seq Expression	Moc11g14240
Synteny	Moc11g14240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATATCTGCGGAAAACCCGAGAACAAATCCTATCAGTGCACCCAGAGGAAAGATTGAAAGATCAAATAACTACTCTACAAGCCAACTTTGCAGAGACGGATGGCATAATTGCCGCTGTGGTTGTGGAAGCAAATCTGGTAAAGAACAAATTCGATTGGATTCTTGACATAGGAGTGTCCAGACATTTCTGCTCGACCCATGACCTCTTCCACGACTTTCAAGACTCTATTGATGGCGATTATGTGATTATGGGGAACTCTGCTACAGCTGAAGTACTTGGGAAAGGGAAGGTTCTCTTGAAACTCACATGTGGCAAAACTTTATCATTAAGTAATGTGTTGTATGTTCCTTCCCTGCGTAGGAATTAATGGCAGGAGGTCTGTTGAACCGAACCGGACTTGGAATTGTGTTTGAGGCCGATAAGGTTATCATCATACAGATGGTTTGTTTGTTATGA

mRNA sequence

ATGCTATATCTGCGGAAAACCCGAGAACAAATCCTATCAGTGCACCCAGAGGAAAGATTGAAAGATCAAATAACTACTCTACAAGCCAACTTTGCAGAGACGGATGGCATAATTGCCGCTGTGGTTGTGGAAGCAAATCTGGTAAAGAACAAATTCGATTGGATTCTTGACATAGGAGTGTCCAGACATTTCTGCTCGACCCATGACCTCTTCCACGACTTTCAAGACTCTATTGATGGCGATTATGTGATTATGGGGAACTCTGCTACAGCTGAAGTACTTGGGAAAGGGAAGGAATTAATGGCAGGAGGTCTGTTGAACCGAACCGGACTTGGAATTGTGTTTGAGGCCGATAAGGTTATCATCATACAGATGGTTTGTTTGTTATGA

Coding sequence (CDS)

ATGCTATATCTGCGGAAAACCCGAGAACAAATCCTATCAGTGCACCCAGAGGAAAGATTGAAAGATCAAATAACTACTCTACAAGCCAACTTTGCAGAGACGGATGGCATAATTGCCGCTGTGGTTGTGGAAGCAAATCTGGTAAAGAACAAATTCGATTGGATTCTTGACATAGGAGTGTCCAGACATTTCTGCTCGACCCATGACCTCTTCCACGACTTTCAAGACTCTATTGATGGCGATTATGTGATTATGGGGAACTCTGCTACAGCTGAAGTACTTGGGAAAGGGAAGGAATTAATGGCAGGAGGTCTGTTGAACCGAACCGGACTTGGAATTGTGTTTGAGGCCGATAAGGTTATCATCATACAGATGGTTTGTTTGTTATGA

Protein sequence

MLYLRKTREQILSVHPEERLKDQITTLQANFAETDGIIAAVVVEANLVKNKFDWILDIGVSRHFCSTHDLFHDFQDSIDGDYVIMGNSATAEVLGKGKELMAGGLLNRTGLGIVFEADKVIIIQMVCLL

Homology

[Close]

BLAST of Moc11g14240 vs. NCBI nr
Match: XP_022156810.1 (uncharacterized protein LOC111023645 [Momordica charantia])

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28
Identity = 75/126 (59.52%), Postives = 80/126 (63.49%), Query Frame = 0


Query: 21  KDQITTLQANFAETDGIIAAVVVEANLVKNKFDWILDIGVSRHFCSTHDLFHDFQDSIDG 80
           KDQ  T Q N  ETD II  VVVEANLV+NK DWILD GVSRHFCS  DLFHDF DS D 
Sbjct: 47  KDQRATRQVNLTETDDIIDVVVVEANLVENKSDWILDTGVSRHFCSNRDLFHDFHDSADD 106

Query: 81  DYVIMGNSATAEVLGKG------------------------KELMAGGLLNRTGLGIVFE 123
           +YV MGNSAT  VLGKG                        + L++GGLLNR GL IVFE
Sbjct: 107 EYVFMGNSATVGVLGKGNVLLKLTSGKTLSLSNVLYVPSLHRNLVSGGLLNRAGLRIVFE 166

[Close]

BLAST of Moc11g14240 vs. NCBI nr
Match: XP_022153695.1 (uncharacterized protein LOC111021147 [Momordica charantia])

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-26
Identity = 72/125 (57.60%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 22  DQITTLQANFAETDGIIAAVVVEANLVKNKFDWILDIGVSRHFCSTHDLFHDFQDSIDGD 81
           DQ  T QAN  ETD II  VVVE NLV+NK DWILD G SRHFCS  DLFHDFQDS DG+
Sbjct: 161 DQRATPQANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGE 220

Query: 82  YVIMGNSATAEVLGKGK------------------------ELMAGGLLNRTGLGIVFEA 123
            V MGNSAT  VLGKGK                         L++ GLLNR GL IVF+A
Sbjct: 221 CVFMGNSATVGVLGKGKVLLKLTSGKTLSLSNVLYVPSLRRNLVSRGLLNRAGLRIVFKA 280

[Close]

BLAST of Moc11g14240 vs. NCBI nr
Match: KAA0049793.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 61/125 (48.80%), Postives = 77/125 (61.60%), Query Frame = 0


Query: 22  DQITTLQANFAETDGIIAAVVVEANLVKNKFDWILDIGVSRHFCSTHDLFHDFQDSIDGD 81
           +Q  T QAN AE D  I A +VEANL++NK DWILD G SRHFC+  +L HD++D+ DG+
Sbjct: 129 NQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGE 188

Query: 82  YVIMGNSATAEVLGKGK------------------------ELMAGGLLNRTGLGIVFEA 123
            V MGNSATAEV+GKGK                         L++G LLN+ GL IV E 
Sbjct: 189 CVFMGNSATAEVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNQVGLKIVLEG 248

[Close]

BLAST of Moc11g14240 vs. NCBI nr
Match: KAA0066784.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-22
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 23  QITTLQANFAETDGIIAAVVVEANLVKNKFDWILDIGVSRHFCSTHDLFHDFQDSIDGDY 82
           Q  T QAN AE D  I A +VEANL++NK DWILD G SRHFC+  +L HD++D++DG+ 
Sbjct: 304 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTVDGEC 363

Query: 83  VIMGNSATAEVLGKGK------------------------ELMAGGLLNRTGLGIVFEAD 123
           V MGNSATA V+GKGK                         L++G LLNR GL IV E D
Sbjct: 364 VFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGD 423

[Close]

BLAST of Moc11g14240 vs. NCBI nr
Match: ADN33807.1 (ty1-copia retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-22
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 23  QITTLQANFAETDGIIAAVVVEANLVKNKFDWILDIGVSRHFCSTHDLFHDFQDSIDGDY 82
           Q  T QAN AE D  I A +VEANL++NK DWILD G SRHFC+  +L HD++D++DG+ 
Sbjct: 304 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTVDGEC 363

Query: 83  VIMGNSATAEVLGKGK------------------------ELMAGGLLNRTGLGIVFEAD 123
           V MGNSATA V+GKGK                         L++G LLNR GL IV E D
Sbjct: 364 VFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGD 423

[Close]

BLAST of Moc11g14240 vs. ExPASy TrEMBL
Match: A0A6J1DRD8 (uncharacterized protein LOC111023645 OS=Momordica charantia OX=3673 GN=LOC111023645 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 8.8e-29
Identity = 75/126 (59.52%), Postives = 80/126 (63.49%), Query Frame = 0


Query: 21  KDQITTLQANFAETDGIIAAVVVEANLVKNKFDWILDIGVSRHFCSTHDLFHDFQDSIDG 80
           KDQ  T Q N  ETD II  VVVEANLV+NK DWILD GVSRHFCS  DLFHDF DS D 
Sbjct: 47  KDQRATRQVNLTETDDIIDVVVVEANLVENKSDWILDTGVSRHFCSNRDLFHDFHDSADD 106

Query: 81  DYVIMGNSATAEVLGKG------------------------KELMAGGLLNRTGLGIVFE 123
           +YV MGNSAT  VLGKG                        + L++GGLLNR GL IVFE
Sbjct: 107 EYVFMGNSATVGVLGKGNVLLKLTSGKTLSLSNVLYVPSLHRNLVSGGLLNRAGLRIVFE 166

[Close]

BLAST of Moc11g14240 vs. ExPASy TrEMBL
Match: A0A6J1DHJ4 (uncharacterized protein LOC111021147 OS=Momordica charantia OX=3673 GN=LOC111021147 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 72/125 (57.60%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 22  DQITTLQANFAETDGIIAAVVVEANLVKNKFDWILDIGVSRHFCSTHDLFHDFQDSIDGD 81
           DQ  T QAN  ETD II  VVVE NLV+NK DWILD G SRHFCS  DLFHDFQDS DG+
Sbjct: 161 DQRATPQANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGE 220

Query: 82  YVIMGNSATAEVLGKGK------------------------ELMAGGLLNRTGLGIVFEA 123
            V MGNSAT  VLGKGK                         L++ GLLNR GL IVF+A
Sbjct: 221 CVFMGNSATVGVLGKGKVLLKLTSGKTLSLSNVLYVPSLRRNLVSRGLLNRAGLRIVFKA 280

[Close]

BLAST of Moc11g14240 vs. ExPASy TrEMBL
Match: A0A5A7U1P8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001550 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.2e-23
Identity = 61/125 (48.80%), Postives = 77/125 (61.60%), Query Frame = 0


Query: 22  DQITTLQANFAETDGIIAAVVVEANLVKNKFDWILDIGVSRHFCSTHDLFHDFQDSIDGD 81
           +Q  T QAN AE D  I A +VEANL++NK DWILD G SRHFC+  +L HD++D+ DG+
Sbjct: 129 NQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGE 188

Query: 82  YVIMGNSATAEVLGKGK------------------------ELMAGGLLNRTGLGIVFEA 123
            V MGNSATAEV+GKGK                         L++G LLN+ GL IV E 
Sbjct: 189 CVFMGNSATAEVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNQVGLKIVLEG 248

[Close]

BLAST of Moc11g14240 vs. ExPASy TrEMBL
Match: A0A5A7VHG8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G001260 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.4e-23
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 23  QITTLQANFAETDGIIAAVVVEANLVKNKFDWILDIGVSRHFCSTHDLFHDFQDSIDGDY 82
           Q  T QAN AE D  I A +VEANL++NK DWILD G SRHFC+  +L HD++D++DG+ 
Sbjct: 304 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTVDGEC 363

Query: 83  VIMGNSATAEVLGKGK------------------------ELMAGGLLNRTGLGIVFEAD 123
           V MGNSATA V+GKGK                         L++G LLNR GL IV E D
Sbjct: 364 VFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGD 423

[Close]

BLAST of Moc11g14240 vs. ExPASy TrEMBL
Match: E5GBG5 (Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.4e-23
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 23  QITTLQANFAETDGIIAAVVVEANLVKNKFDWILDIGVSRHFCSTHDLFHDFQDSIDGDY 82
           Q  T QAN AE D  I A +VEANL++NK DWILD G SRHFC+  +L HD++D++DG+ 
Sbjct: 304 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTVDGEC 363

Query: 83  VIMGNSATAEVLGKGK------------------------ELMAGGLLNRTGLGIVFEAD 123
           V MGNSATA V+GKGK                         L++G LLNR GL IV E D
Sbjct: 364 VFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGD 423

The following BLAST results are available for this feature:

BLAST of Moc11g14240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156810.1	1.8e-28	59.52	uncharacterized protein LOC111023645 [Momordica charantia]	[more]
XP_022153695.1	2.9e-26	57.60	uncharacterized protein LOC111021147 [Momordica charantia]	[more]
KAA0049793.1	1.5e-22	48.80	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066784.1	1.9e-22	49.19	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN33807.1	1.9e-22	49.19	ty1-copia retrotransposon protein [Cucumis melo subsp. melo]	[more]

BLAST of Moc11g14240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g14240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRD8	8.8e-29	59.52	uncharacterized protein LOC111023645 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DHJ4	1.4e-26	57.60	uncharacterized protein LOC111021147 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7U1P8	7.2e-23	48.80	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VHG8	9.4e-23	49.19	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
E5GBG5	9.4e-23	49.19	Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=...	[more]

BLAST of Moc11g14240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g14240.1	Moc11g14240.1	mRNA