Moc11g13870 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc11g13870
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr11: 10309626 .. 10311482 (+)
RNA-Seq ExpressionMoc11g13870
SyntenyMoc11g13870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCCGGAGCCTCTTCTCATGTTGCATGTACATGCTCCTTATTGCCTAATGGTTCGTCAAATTTTTGGATTGTTGATTTCGGTGCTTCTACACATATATGTTTCTCTCGCGACTACTTTGTCTCTTTACATCCCGTTTGTGCTTCAGTCACTTTACCGGATAAAAAACATATTACTGTTCGCCATATGGGTAGAGTTATCTTGACTCCTTCCTTGTTGATTCATGGCGTTATATATATACCGGGTTTTCAATACAACCTCCTTTTAGTTAGCACGTCTTTAATGGATGATTTTGTAGTTATACAATTTTCTAACAATTGTTGCCTCATTCAGGACAAGTCCACTTTGAAGACGATTCGCAAGGCTAGACTTTTTGATGGACTGTACATGGTTGACACCTCGACAACTCCAATTGACACCTCTTTTTATCGTGTTGTTTACGCAAATTTGACCTCCCGATCTTCTACTGTTTTGTCGCACCATAGCTTGGTCACCCATCTTTTAGTTGTTTAAATTCTTTACGAACTGTTTTGCATTTACCCTTGTTGCAACATGATCATTATGCATATTGTGACATTTGTCCTTTAGCTAAGCAACGACGTTTATCGTTTGTTTCAAATAACAGTTTCTCTCATCATGCTTTTGATCTTATTCATGCGGATGTTTGGGGAACTTTTCTACACCAACTTATGCTGGACATTACTATTGTTTTTTATTGTTGTTGATGATGCTACAAACTATACATGGGTTTTTATGCTTAAAAATAAATAAGATGTTCTGCACGTTGTTCCTCATTGTTTTAAGCTTGTTGAGACTCAATTTGGTAAATGCATCAAGCTATTTCATTCTGATAATGCATCTGAGCTTCAGTTTGATGAGTTTTTTGCTTCTAAAGGTGTTATTCATCAATTTTCATGTGTTAGTCGCCCTCAACAAAACTCTGTTGTTGAACAGAAATATCAACATATATTGAATGTTGTACGGGCTCTTTATTCTCAATCACGAATTCCGCTCCATTTTTGGGTGATTGTATTCTTACTGCAGTGTTTCTTATTAATCGCACTTCGTCACATGTGTTATCTTGGCACACTCCTTTTGAACTACTTCATAAGGCTCTGCCTGATTTTGGACATCTTCATGTTTTTTGTTGTCTCTGTTTTGCTTCTACACTTACTGTCAATCGGTCTAAATTTCAACCCGAGCTATTCCAGTTATTTTTCTTGGGTATCCACCTGGAATGAAAGCATACGGGCTATATGATATTACAAATCAGAAATTTATTATTTCCCGTGATGTTGTATTTCATGAGGATGTTTTCCCCTTTCACAAAGTTACTGAGAAATATGTCATTTCTTATTCGTTTCATGGTTTTTTTTTTACCCAAGGTTCTTCATTGTGGCAGTGATTTGTCCCATATTCCCACTAACTCTAGTGTTGAACAGTTTGATGGACATTTGATGAACATATGGCTTCACCCCTTGTGTATAAAGAACCTGCTCCTGTTACTATTCCGACGCCATCGCTGACCACAGCAATATCCGACCCTCTGGTAGCCGCAACTCCAAATCCGCCAGCAAATGCTATTCCATTGGCCATTGCGGATCAGAACTCGCCGGCACCTACAACTCTAAATCCACCGAAACTGTCGGCCAATGCCGGTCCAGCTCCACCAGCCATAGCAGTACCAGACCCACCAGTCGTCGTAGCGGTACGCAACCCGCCAGCCGCTGCAGCTCCAAATTCACCGGCCCTTCTTGTTCTAGGCCCGCTGGCCATTGTCGCTCCAGATCTCCCGGTCCCCACTATTCCAGATCCGCCAGATGCTGTACAGCGACATGCTATGGCTGATTTATAG

mRNA sequence

ATGACTCCGGAGCCTCTTCTCATGTTGCATGTACATGCTCCTTATTGCCTAATGGACAAGTCCACTTTGAAGACGATTCGCAAGGCTAGACTTTTTGATGGACTGTACATGGTTGACACCTCGACAACTCCAATTGACACCTCTTTTTATCAACCTGCTCCTGTTACTATTCCGACGCCATCGCTGACCACAGCAATATCCGACCCTCTGGTAGCCGCAACTCCAAATCCGCCAGCAAATGCTATTCCATTGGCCATTGCGGATCAGAACTCGCCGGCACCTACAACTCTAAATCCACCGAAACTGTCGGCCAATGCCGGTCCAGCTCCACCAGCCATAGCAGTACCAGACCCACCAGTCGTCGTAGCGGTACGCAACCCGCCAGCCGCTGCAGCTCCAAATTCACCGGCCCTTCTTGTTCTAGGCCCGCTGGCCATTGTCGCTCCAGATCTCCCGGTCCCCACTATTCCAGATCCGCCAGATGCTGTACAGCGACATGCTATGGCTGATTTATAG

Coding sequence (CDS)

ATGACTCCGGAGCCTCTTCTCATGTTGCATGTACATGCTCCTTATTGCCTAATGGACAAGTCCACTTTGAAGACGATTCGCAAGGCTAGACTTTTTGATGGACTGTACATGGTTGACACCTCGACAACTCCAATTGACACCTCTTTTTATCAACCTGCTCCTGTTACTATTCCGACGCCATCGCTGACCACAGCAATATCCGACCCTCTGGTAGCCGCAACTCCAAATCCGCCAGCAAATGCTATTCCATTGGCCATTGCGGATCAGAACTCGCCGGCACCTACAACTCTAAATCCACCGAAACTGTCGGCCAATGCCGGTCCAGCTCCACCAGCCATAGCAGTACCAGACCCACCAGTCGTCGTAGCGGTACGCAACCCGCCAGCCGCTGCAGCTCCAAATTCACCGGCCCTTCTTGTTCTAGGCCCGCTGGCCATTGTCGCTCCAGATCTCCCGGTCCCCACTATTCCAGATCCGCCAGATGCTGTACAGCGACATGCTATGGCTGATTTATAG

Protein sequence

MTPEPLLMLHVHAPYCLMDKSTLKTIRKARLFDGLYMVDTSTTPIDTSFYQPAPVTIPTPSLTTAISDPLVAATPNPPANAIPLAIADQNSPAPTTLNPPKLSANAGPAPPAIAVPDPPVVVAVRNPPAAAAPNSPALLVLGPLAIVAPDLPVPTIPDPPDAVQRHAMADL
Homology
[Close]
BLAST of Moc11g13870 vs. NCBI nr
Match: XP_004654508.1 (PREDICTED: protein SON isoform X5 [Jaculus jaculus])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 52/141 (36.88%), Postives = 69/141 (48.94%), Query Frame = 0 

Query: 25   TIRKARLFDGLYMVDTSTTPIDTSFYQPAPVTIPTPS------LTTAISDPLVAATPNPP 84
            T   A  FD +     + + +  S  +P PVTIP P+        T + +P + A P PP
Sbjct: 1310 TSETAETFDSMRPSVHAASEVSVSLLEP-PVTIPEPAESSLDLSATVVPEPSIVAIPEPP 1369

Query: 85   ANAIPLAIADQNSPAPTTLNPPKLSANAGPAPPAIAVPDPPVVVAVRNPPAAAAPNSPAL 144
            A A+P               PP L   A P PPA+ VP+PP  VAV  PPA A P  PA+
Sbjct: 1370 ALAVP--------------EPPAL---AVPEPPALVVPEPP-AVAVPEPPAVAVPEPPAV 1429

Query: 145  LVLGPLAIVAPDLPVPTIPDP 160
             VL P+A+  P+ PV   P+P
Sbjct: 1430 AVLDPVAVAIPEPPVMATPEP 1431

[Close]
BLAST of Moc11g13870 vs. NCBI nr
Match: XP_004654506.1 (PREDICTED: protein SON isoform X3 [Jaculus jaculus])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 52/141 (36.88%), Postives = 69/141 (48.94%), Query Frame = 0 

Query: 25   TIRKARLFDGLYMVDTSTTPIDTSFYQPAPVTIPTPS------LTTAISDPLVAATPNPP 84
            T   A  FD +     + + +  S  +P PVTIP P+        T + +P + A P PP
Sbjct: 1310 TSETAETFDSMRPSVHAASEVSVSLLEP-PVTIPEPAESSLDLSATVVPEPSIVAIPEPP 1369

Query: 85   ANAIPLAIADQNSPAPTTLNPPKLSANAGPAPPAIAVPDPPVVVAVRNPPAAAAPNSPAL 144
            A A+P               PP L   A P PPA+ VP+PP  VAV  PPA A P  PA+
Sbjct: 1370 ALAVP--------------EPPAL---AVPEPPALVVPEPP-AVAVPEPPAVAVPEPPAV 1429

Query: 145  LVLGPLAIVAPDLPVPTIPDP 160
             VL P+A+  P+ PV   P+P
Sbjct: 1430 AVLDPVAVAIPEPPVMATPEP 1431

[Close]
BLAST of Moc11g13870 vs. NCBI nr
Match: XP_004654504.1 (PREDICTED: protein SON isoform X1 [Jaculus jaculus])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 52/141 (36.88%), Postives = 69/141 (48.94%), Query Frame = 0 

Query: 25   TIRKARLFDGLYMVDTSTTPIDTSFYQPAPVTIPTPS------LTTAISDPLVAATPNPP 84
            T   A  FD +     + + +  S  +P PVTIP P+        T + +P + A P PP
Sbjct: 1310 TSETAETFDSMRPSVHAASEVSVSLLEP-PVTIPEPAESSLDLSATVVPEPSIVAIPEPP 1369

Query: 85   ANAIPLAIADQNSPAPTTLNPPKLSANAGPAPPAIAVPDPPVVVAVRNPPAAAAPNSPAL 144
            A A+P               PP L   A P PPA+ VP+PP  VAV  PPA A P  PA+
Sbjct: 1370 ALAVP--------------EPPAL---AVPEPPALVVPEPP-AVAVPEPPAVAVPEPPAV 1429

Query: 145  LVLGPLAIVAPDLPVPTIPDP 160
             VL P+A+  P+ PV   P+P
Sbjct: 1430 AVLDPVAVAIPEPPVMATPEP 1431

The following BLAST results are available for this feature:
BLAST of Moc11g13870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004654508.11.7e-0536.88PREDICTED: protein SON isoform X5 [Jaculus jaculus][more]
XP_004654506.11.7e-0536.88PREDICTED: protein SON isoform X3 [Jaculus jaculus][more]
XP_004654504.11.7e-0536.88PREDICTED: protein SON isoform X1 [Jaculus jaculus][more]
BLAST of Moc11g13870 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc11g13870 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc11g13870 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc11g13870.1Moc11g13870.1mRNA