Moc11g13830 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g13830
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	UBN2_3 domain-containing protein
Location	chr11: 10289253 .. 10291162 (-)
RNA-Seq Expression	Moc11g13830
Synteny	Moc11g13830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGAGACACTTGAAAAACACTATTCATCAAGTTCTCGCACAAACGTGGTGAATCTGAAATCTGATCTTCAAACTATTTCGAATAAATCTGGTGAGTCTATTGATGACTATATCAAAAGAATCAAGACTTAAAGATAAACTTCCAAATGTCTCTGTTGTGGTTGATAAATCCTAATATATACACTCAATGGTTTGCCTTCGCAACGTCATTACTATGCGGAGCGGCCGACATCATCTGAAGGGTCTCTATCGAGATTAGGTTTTGGAGTAAACAAATTATCACCTCGAGAATATTGGAAAGATCCAATTTCTCGCCATCAAGACTTGAACTTGTGATGTGAAAATCATATATAAATTTCTTACCAATGTGCCAACATCCTAAGATATCACTTAATATTTTATATAAATGTTTTAAGATTTGAAATCTTATAAAAACGAAAGTTTTTTTTTATATTAAAAAAACATTTTATCTAAAATAGTTGTTTGGTAAAATAATGATATAAAAAAACATTAATTTAAGCAAGCAAAGACTCGAATCAAACACATGTGAATTACTCCTAAGTAACCTACCACTATGCCAACACCATATGATACAACTTAGTATTAATTCTTATTATACAAATCTTTATTTAAAAAAATGTTTAAAAAAAAATAATAATAATACTAAAATGAAAAATAATAATAATAATAATAATAATAAAATAAATTTATTTTATTTTAGATTTGAAATTCCTCTAACAAACTTCCTTAAAACAAAAAAAACATTTAAAACAAACTTGTTTTTAAAATTTAAATAATCAAATCATATTTAAAACAAATTTATTTCAAAAATAATCAAATCATATTTCTTATTTCAAAAATAATCCAATCATATTTCTTACTTGTTTTTAAAATTTAAATAATCAAATCATATTTAAAACAAATTTATTTTAAAAATAATCCAATCATATTTCTTATTTTAAAAATTATCAAATCATATTTAGACAAATTTATTTTAATATATATATATATCAAATTTAAAACAAGCTTATTTAAAACAAATATAAAAAAAATCAAATCATTTCTAAAACAACCTTTTTCTATACCCTGCACTGAGGAAATTCTGGGTGTGCCCACGGGTCTGAAACCGTGAAGGAGCACTCGAGGTCGGATTCAGGTGGTCGGTGATCCGTGCGTCGATTGTTGAACTTTGCGCCAGACTACTGTGGTGCAGGTTGTTTGAACTTGTGATCATCGGGGACTTGTGTAGTCTGTGTATCGTCGGGGTTGTCGGCCTGGGTGAAGAGGAAGAGAAGGTGATGGTAGAGAGAAAGAAGGAAGTGAATTCTTCTCTGTATTTCCTCTTCTCTGGGTGAAGAGGAAGAGAAGGACTTGTGTAGTCTGTCTTTCCTCCTCACTGCCTTAAATACACCTAAAACTAAGGATAAAAAAGAAAAAGGGGAAGAGAAGAGAGAAAAAGAGGGAGGAGAAGAAGGGGAGGGGATACGTATGAAAGAAAAAATCAAAGGGGAGAACTGTTTTTTTTTTATCTTAAAATCAATTTAAAAAAAACCAATTATTTTCAAATAAAATCTAATTTTAAAACTTAATTTGATTCAATTAACACTTTACATTAAATTTTATAATAAAGTAAATTATGTTATTTTAAACTAAATCAATAAACATAAAAAAAATAAAAAAAAAAATATAATAAATAAATTAGTAATAAATTTAAAAAAAAAAACAAAAGCGAGCGGGACCAAATACGGTGTCTACACAATGTATTCCGCACATCTATGCGGACTCGTTCACAGCTTGTTGATTTTGAAGAACTTCACGTTCTTCTCAAATCTGAAGAATCTGCTATTGAGAAGCAATCTAAAAGAGATGATTCTCTTACACAACCTACTGCTATGGTCGCTGCTTAG

mRNA sequence

ATGTGGGAGACACTTGAAAAACACTATTCATCAAGTTCTCGCACAAACGTGGTGAATCTGAAATCTGATCTTCAAACTATTTCGAATAAATCTGGAGCACTCGAGGTCGGATTCAGGTGGTCGGTGATCCGTGCGTCGATTGTTGAACTTTGCGCCAGACTACTGTGGTGCAGGTTGTTTGAACTTGTGATCATCGGGGACTTGTGTAGTCTGTGTATCGTCGGGGTTGTCGGCCTGGGTGAAGAGGAAGAGAAGCTTGTTGATTTTGAAGAACTTCACGTTCTTCTCAAATCTGAAGAATCTGCTATTGAGAAGCAATCTAAAAGAGATGATTCTCTTACACAACCTACTGCTATGGTCGCTGCTTAG

Coding sequence (CDS)

ATGTGGGAGACACTTGAAAAACACTATTCATCAAGTTCTCGCACAAACGTGGTGAATCTGAAATCTGATCTTCAAACTATTTCGAATAAATCTGGAGCACTCGAGGTCGGATTCAGGTGGTCGGTGATCCGTGCGTCGATTGTTGAACTTTGCGCCAGACTACTGTGGTGCAGGTTGTTTGAACTTGTGATCATCGGGGACTTGTGTAGTCTGTGTATCGTCGGGGTTGTCGGCCTGGGTGAAGAGGAAGAGAAGCTTGTTGATTTTGAAGAACTTCACGTTCTTCTCAAATCTGAAGAATCTGCTATTGAGAAGCAATCTAAAAGAGATGATTCTCTTACACAACCTACTGCTATGGTCGCTGCTTAG

Protein sequence

MWETLEKHYSSSSRTNVVNLKSDLQTISNKSGALEVGFRWSVIRASIVELCARLLWCRLFELVIIGDLCSLCIVGVVGLGEEEEKLVDFEELHVLLKSEESAIEKQSKRDDSLTQPTAMVAA

Homology

[Close]

BLAST of Moc11g13830 vs. NCBI nr
Match: TYK17989.1 (uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 56/131 (42.75%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 1   MWETLEKHYSSSSRTNVVNLKSDLQTISNKSGALEVGFRWSVIRASIVELCARLLWCRLF 60
           +W+TLE+HYSS++RTN+VNLKSDLQ IS K     +G     I+          +  +L 
Sbjct: 131 VWKTLERHYSSNTRTNIVNLKSDLQQISKKPDE-PIGLYIKKIKE---------VKDKLA 190

Query: 61  ELVIIGDLCSLCIVGVVGLGEE----------EEKLVDFEELHVLLKSEESAIEKQSKRD 120
               I +   L I  + GL  E            + V F ELH+LLKSEESA+EKQ+KR+
Sbjct: 191 NAATIVEDEDLVIYALNGLPREYNAFRTSMQTRSQPVSFSELHILLKSEESALEKQTKRE 250

Query: 121 DSLTQPTAMVA 122
           D   QPTAM+A
Sbjct: 251 DISVQPTAMLA 251

[Close]

BLAST of Moc11g13830 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 59/134 (44.03%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 1   MWETLEKHYSSSSRTNVVNLKSDLQTISNKSGALEVGFRWSVIRASIVELCARL--LWCR 60
           +WE LEKHYSS+SRTNVVNLKSDLQ+I  K+              SI     R+  +  +
Sbjct: 145 VWEVLEKHYSSNSRTNVVNLKSDLQSIVKKT------------EESIDAYVKRIKEIKDK 204

Query: 61  LFELVIIGDLCSLCIVGVVGLGEEEEKL----------VDFEELHVLLKSEESAIEKQSK 120
              + I  +   L I  + GL  E   L          V FEELHV +KSEESAIEKQ K
Sbjct: 205 FANVSITINDEYLLIYALNGLSTEYNTLSTSMRTRAQSVSFEELHVFMKSEESAIEKQMK 264

Query: 121 RDDSLTQPTAMVAA 123
           R+D +TQP A+ A+
Sbjct: 265 REDLVTQPNALFAS 266

[Close]

BLAST of Moc11g13830 vs. NCBI nr
Match: XP_022157455.1 (uncharacterized protein LOC111024149 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-10
Identity = 57/131 (43.51%), Postives = 75/131 (57.25%), Query Frame = 0


Query: 1   MWETLEKHYSSSSRTNVVNLKSDLQTISNKSGALEVGFRWSVIRASIVELCARLLWCRLF 60
           +W+TLEKHYSSSSRTNVVNLKSDLQ+IS K G     +   V R   V+        +L 
Sbjct: 25  IWDTLEKHYSSSSRTNVVNLKSDLQSISKKVGECIDDY---VKRIKEVK-------DKLT 84

Query: 61  ELVIIGDLCSLCIVGVVGLG----------EEEEKLVDFEELHVLLKSEESAIEKQSKRD 120
            + ++ D   L I  + GL               + V F+ELHVL+KSEE A+++Q KRD
Sbjct: 85  NVSVVVDDEDLLIYTLNGLPSAYNVFRTSMRTRSQSVTFDELHVLMKSEEVALDRQVKRD 144

Query: 121 DSLTQPTAMVA 122
           D  +Q TA+ A
Sbjct: 145 DLFSQNTALFA 145

[Close]

BLAST of Moc11g13830 vs. NCBI nr
Match: KAG6588985.1 (Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 6.1e-10
Identity = 59/132 (44.70%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 1   MWETLEKHYSSSSRTNVVNLKSDLQTISNKSGALEVGFRWSVIRASIVELCARLLWCRLF 60
           +W  L K YSSSSR+NVVNLKSDLQTIS KS           I A I  +  + +  +L 
Sbjct: 107 VWNVLAKLYSSSSRSNVVNLKSDLQTISKKSD--------ESIDAYIKRI--KEIKDKLA 166

Query: 61  ELVIIGDLCSLCIVGVVGLGEEEEKL----------VDFEELHVLLKSEESAIEKQSKRD 120
            +  + +   L I  + GL  E              V FEELHVLLK+EESA+ KQSKRD
Sbjct: 167 NVSTVVNDEDLLIYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESALAKQSKRD 226

Query: 121 DSLTQPTAMVAA 123
           D   QPTA++A+
Sbjct: 227 DLCKQPTALLAS 228

[Close]

BLAST of Moc11g13830 vs. NCBI nr
Match: KAG7015254.1 (hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.7 bits (182), Expect = 6.1e-10
Identity = 59/132 (44.70%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 1   MWETLEKHYSSSSRTNVVNLKSDLQTISNKSGALEVGFRWSVIRASIVELCARLLWCRLF 60
           +W  L K YSSSSR+NVVNLKSDLQTIS KS           I A I  +  + +  +L 
Sbjct: 107 VWNVLAKLYSSSSRSNVVNLKSDLQTISKKSD--------ESIDAYIKRI--KEIKDKLA 166

Query: 61  ELVIIGDLCSLCIVGVVGLGEEEEKL----------VDFEELHVLLKSEESAIEKQSKRD 120
            +  + +   L I  + GL  E              V FEELHVLLK+EESA+ KQSKRD
Sbjct: 167 NVSTVVNDEDLLIYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESALAKQSKRD 226

Query: 121 DSLTQPTAMVAA 123
           D   QPTA++A+
Sbjct: 227 DLCKQPTALLAS 228

[Close]

BLAST of Moc11g13830 vs. ExPASy TrEMBL
Match: A0A5D3D3T6 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002980 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-11
Identity = 56/131 (42.75%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 1   MWETLEKHYSSSSRTNVVNLKSDLQTISNKSGALEVGFRWSVIRASIVELCARLLWCRLF 60
           +W+TLE+HYSS++RTN+VNLKSDLQ IS K     +G     I+          +  +L 
Sbjct: 131 VWKTLERHYSSNTRTNIVNLKSDLQQISKKPDE-PIGLYIKKIKE---------VKDKLA 190

Query: 61  ELVIIGDLCSLCIVGVVGLGEE----------EEKLVDFEELHVLLKSEESAIEKQSKRD 120
               I +   L I  + GL  E            + V F ELH+LLKSEESA+EKQ+KR+
Sbjct: 191 NAATIVEDEDLVIYALNGLPREYNAFRTSMQTRSQPVSFSELHILLKSEESALEKQTKRE 250

Query: 121 DSLTQPTAMVA 122
           D   QPTAM+A
Sbjct: 251 DISVQPTAMLA 251

[Close]

BLAST of Moc11g13830 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.0e-11
Identity = 59/134 (44.03%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 1   MWETLEKHYSSSSRTNVVNLKSDLQTISNKSGALEVGFRWSVIRASIVELCARL--LWCR 60
           +WE LEKHYSS+SRTNVVNLKSDLQ+I  K+              SI     R+  +  +
Sbjct: 145 VWEVLEKHYSSNSRTNVVNLKSDLQSIVKKT------------EESIDAYVKRIKEIKDK 204

Query: 61  LFELVIIGDLCSLCIVGVVGLGEEEEKL----------VDFEELHVLLKSEESAIEKQSK 120
              + I  +   L I  + GL  E   L          V FEELHV +KSEESAIEKQ K
Sbjct: 205 FANVSITINDEYLLIYALNGLSTEYNTLSTSMRTRAQSVSFEELHVFMKSEESAIEKQMK 264

Query: 121 RDDSLTQPTAMVAA 123
           R+D +TQP A+ A+
Sbjct: 265 REDLVTQPNALFAS 266

[Close]

BLAST of Moc11g13830 vs. ExPASy TrEMBL
Match: A0A6J1DT57 (uncharacterized protein LOC111024149 OS=Momordica charantia OX=3673 GN=LOC111024149 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.8e-11
Identity = 57/131 (43.51%), Postives = 75/131 (57.25%), Query Frame = 0


Query: 1   MWETLEKHYSSSSRTNVVNLKSDLQTISNKSGALEVGFRWSVIRASIVELCARLLWCRLF 60
           +W+TLEKHYSSSSRTNVVNLKSDLQ+IS K G     +   V R   V+        +L 
Sbjct: 25  IWDTLEKHYSSSSRTNVVNLKSDLQSISKKVGECIDDY---VKRIKEVK-------DKLT 84

Query: 61  ELVIIGDLCSLCIVGVVGLG----------EEEEKLVDFEELHVLLKSEESAIEKQSKRD 120
            + ++ D   L I  + GL               + V F+ELHVL+KSEE A+++Q KRD
Sbjct: 85  NVSVVVDDEDLLIYTLNGLPSAYNVFRTSMRTRSQSVTFDELHVLMKSEEVALDRQVKRD 144

Query: 121 DSLTQPTAMVA 122
           D  +Q TA+ A
Sbjct: 145 DLFSQNTALFA 145

[Close]

BLAST of Moc11g13830 vs. ExPASy TrEMBL
Match: A0A5D3DI75 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001930 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 55/131 (41.98%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 1   MWETLEKHYSSSSRTNVVNLKSDLQTISNKSGALEVGFRWSVIRASIVELCARLLWCRLF 60
           +W+TLE HYSS+++TN+VNLKSDLQ IS K            I   I ++  + L  +L 
Sbjct: 74  VWKTLETHYSSNTKTNIVNLKSDLQQISKKQD--------ESIDLYIKKI--KELKDKLA 133

Query: 61  ELVIIGDLCSLCIVGVVGLGEE----------EEKLVDFEELHVLLKSEESAIEKQSKRD 120
               I +     I  + GL  E            + V F +LHVLLKSEESAIEKQ+K +
Sbjct: 134 NAATIVEDEDPVIYALNGLPSEYSAFRTSMQTRSQPVGFSDLHVLLKSEESAIEKQTKCE 193

Query: 121 DSLTQPTAMVA 122
           D L QPT M+A
Sbjct: 194 DILGQPTTMLA 194

[Close]

BLAST of Moc11g13830 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 53/132 (40.15%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 1   MWETLEKHYSSSSRTNVVNLKSDLQTISNKSGALEVGFRWSVIRASIVELCARLLWCRLF 60
           +W+ L K YSS SR+NVVNLKSDLQTI  K            I A I  +  + +  +L 
Sbjct: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPD--------ESIDAYIKRI--KEIKDKLA 180

Query: 61  ELVIIGDLCSLCIVGVVGLGEE----------EEKLVDFEELHVLLKSEESAIEKQSKRD 120
            +    +   L I  + GL  E            + V FEELHVLL++EESA+ KQSK D
Sbjct: 181 NVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGD 240

Query: 121 DSLTQPTAMVAA 123
           DS  QPT ++++
Sbjct: 241 DSYNQPTVLLSS 242

The following BLAST results are available for this feature:

BLAST of Moc11g13830 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK17989.1	4.2e-11	42.75	uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa]	[more]
XP_022150845.1	1.2e-10	44.03	uncharacterized protein LOC111018892 [Momordica charantia]	[more]
XP_022157455.1	1.6e-10	43.51	uncharacterized protein LOC111024149 [Momordica charantia]	[more]
KAG6588985.1	6.1e-10	44.70	Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyr...	[more]
KAG7015254.1	6.1e-10	44.70	hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Moc11g13830 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g13830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D3T6	2.1e-11	42.75	Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1D9L6	6.0e-11	44.03	uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DT57	7.8e-11	43.51	uncharacterized protein LOC111024149 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5D3DI75	1.2e-08	41.98	UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3CLI6	1.8e-07	40.15	T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=...	[more]

BLAST of Moc11g13830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g13830.1	Moc11g13830.1	mRNA