Moc11g13820 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g13820
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	chr11: 10286606 .. 10287341 (-)
RNA-Seq Expression	Moc11g13820
Synteny	Moc11g13820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACCTGTGGCAAATTCGGTATTTCTAAACGAAAGGCCTTTCGTGCAATTACTTCTTCACCACCATCTTCTTCAACTGAAGAGCCTTCCTCTTTCACAGCTGCTTCTAAATTTCCTATATGGCAGCAAGCTATGATTGTGCAGTTTAATGCTCTTATTCGTCAAGGCACTTGGGACCTCACTCCTCTCCCTTTTGGGAAAAGTGGGTCTATTGTATTAAACGACACCCCGACGGTTCTATTGATCTTCGCTTTGTTCCTTCTAGTTCTCAACTTGCTGACATGTTTACAAAGCCTCTTACTGTTGCTCGTCTTTCTCTTTGAAGGCCAAACTTATGCCTCTACTGGCTATTGTTTGAGGGGGGATGTTATCAGTATTAGTTATACTCTGGTTCTTTTGTAATTAGTTACAATTTATTGGGATTTTGTTAGCTTTGTTTACATTATGTTACTTTAGTCTGATGTGTATATAATCTGTTATTAGATCTCTATTTTAATCAAGGCAAACAACTTTTCACAAAATTAGTGAAAAGCATCAAGTACCATTTCTTCAAACTCAACCAGCTCACTCATACCTGCGTTCAAGAGTCGTAAGTTGAAACGACAGCATCAGAATTTACACCTTCAGCTCCTCCACCTACAAAGGAAGTGCTAGAGCATCACGAACACCACCTGCAGCACTCAACACACTTAAGCAAGAGCAGGCTGCCTCGAATAAACGGTCGGGACCATAG

mRNA sequence

ATGCAAACCTGTGGCAAATTCGGTATTTCTAAACGAAAGGCCTTTCGTGCAATTACTTCTTCACCACCATCTTCTTCAACTGAAGAGCCTTCCTCTTTCACAGCTGCTTCTAAATTTCCTATATGGCAGCAAGCTATGATTGTGCAGTTTAATGCTCTTATTCGTCAAGGCACTTGGGACCTCACTCCTCTCCCTTTTGGGAAAAGTGGGTCTATTGTATTAAACGACACCCCGACGGTTCTATTGATCTTCGCTTTGTTCCTTCTAGTTCTCAACTTGCTGACATGTTTACAAAGCCTCTTACTGTTGCTCGTCTTTCTCTTTGAAGGCCAAACTTATGCCTCTACTGGCTATTGTTTGAGGGGGGATGTTATCAGTATTAGTTATACTCTGGTTCTTTTCTCCTCCACCTACAAAGGAAGTGCTAGAGCATCACGAACACCACCTGCAGCACTCAACACACTTAAGCAAGAGCAGGCTGCCTCGAATAAACGGTCGGGACCATAG

Coding sequence (CDS)

ATGCAAACCTGTGGCAAATTCGGTATTTCTAAACGAAAGGCCTTTCGTGCAATTACTTCTTCACCACCATCTTCTTCAACTGAAGAGCCTTCCTCTTTCACAGCTGCTTCTAAATTTCCTATATGGCAGCAAGCTATGATTGTGCAGTTTAATGCTCTTATTCGTCAAGGCACTTGGGACCTCACTCCTCTCCCTTTTGGGAAAAGTGGGTCTATTGTATTAAACGACACCCCGACGGTTCTATTGATCTTCGCTTTGTTCCTTCTAGTTCTCAACTTGCTGACATGTTTACAAAGCCTCTTACTGTTGCTCGTCTTTCTCTTTGAAGGCCAAACTTATGCCTCTACTGGCTATTGTTTGAGGGGGGATGTTATCAGTATTAGTTATACTCTGGTTCTTTTCTCCTCCACCTACAAAGGAAGTGCTAGAGCATCACGAACACCACCTGCAGCACTCAACACACTTAAGCAAGAGCAGGCTGCCTCGAATAAACGGTCGGGACCATAG

Protein sequence

MQTCGKFGISKRKAFRAITSSPPSSSTEEPSSFTAASKFPIWQQAMIVQFNALIRQGTWDLTPLPFGKSGSIVLNDTPTVLLIFALFLLVLNLLTCLQSLLLLLVFLFEGQTYASTGYCLRGDVISISYTLVLFSSTYKGSARASRTPPAALNTLKQEQAASNKRSGP

Homology

[Close]

BLAST of Moc11g13820 vs. NCBI nr
Match: BBH05526.1 (hypothetical protein Prudu_016938 [Prunus dulcis])

HSP 1 Score: 68.6 bits (166), Expect = 6.0e-08
Identity = 41/69 (59.42%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MQTCGKFGISKRKAFRAITSSPPSSSTEEPSSFTAASKFPIWQQAMIVQFNALIRQGTWD 60
           M T  K GISKRKAF A TS     ST EPSSF AAS+ P WQ AM  +  AL  QGTWD
Sbjct: 473 MTTRSKNGISKRKAFSASTSI--DLSTIEPSSFKAASQSPEWQSAMREEIEALHAQGTWD 532

Query: 61  LTPLPFGKS 70
           L PLP  K+
Sbjct: 533 LVPLPAHKN 539

[Close]

BLAST of Moc11g13820 vs. NCBI nr
Match: BBN67324.1 (transposable element gene [Prunus dulcis])

HSP 1 Score: 68.6 bits (166), Expect = 6.0e-08
Identity = 41/69 (59.42%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MQTCGKFGISKRKAFRAITSSPPSSSTEEPSSFTAASKFPIWQQAMIVQFNALIRQGTWD 60
           M T  K GISKRKAF A TS     ST EPSSF AAS+ P WQ AM  +  AL  QGTWD
Sbjct: 547 MTTRSKNGISKRKAFSASTSI--DLSTIEPSSFKAASQSPEWQSAMREEIEALHAQGTWD 606

Query: 61  LTPLPFGKS 70
           L PLP  K+
Sbjct: 607 LVPLPAHKN 613

[Close]

BLAST of Moc11g13820 vs. NCBI nr
Match: VVA41095.1 (PREDICTED: Retrovirus-related Pol poly from transposon, partial [Prunus dulcis])

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-07
Identity = 40/69 (57.97%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1  MQTCGKFGISKRKAFRAITSSPPSSSTEEPSSFTAASKFPIWQQAMIVQFNALIRQGTWD 60
          M T  K GISKRKAF A TS     ST EPSSF AAS+ P WQ AM  +  AL  QGTWD
Sbjct: 18 MTTRSKNGISKRKAFSASTSI--DLSTIEPSSFKAASQSPEWQSAMREEIEALHAQGTWD 77

Query: 61 LTPLPFGKS 70
          L P+P  K+
Sbjct: 78 LVPIPAHKN 84

[Close]

BLAST of Moc11g13820 vs. NCBI nr
Match: KAA0054997.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-07
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 2   QTCGKFGISKRKAFRAITSSPPSSSTE-EPSSFTAASKFPIWQQAMIVQFNALIRQGTWD 61
           QT  K GISK+K F A T  P +S  E EPSS+T ASK  +WQ AM  +++AL++QGTW 
Sbjct: 46  QTRSKSGISKKKVFVAATHLPKNSVDENEPSSYTQASKDLVWQNAMKEEYDALLKQGTWK 105

Query: 62  LTPLPFGK 69
           LT LP  K
Sbjct: 106 LTSLPPNK 113

[Close]

BLAST of Moc11g13820 vs. NCBI nr
Match: TYK17991.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-06
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 1   MQTCGKFGISKRKAFRAITSSPPSSSTE-EPSSFTAASKFPIWQQAMIVQFNALIRQGTW 60
           MQT  K GISK+K F A T  P +S  E E SS+T ASK  +WQ AM  +++AL++QGTW
Sbjct: 45  MQTRSKSGISKKKVFVAATHLPKNSVDENESSSYTQASKDLVWQNAMKEEYDALLKQGTW 104

Query: 61  DLTPLPFGKS 70
            LT L   K+
Sbjct: 105 KLTSLSPNKT 114

[Close]

BLAST of Moc11g13820 vs. ExPASy TrEMBL
Match: A0A4Y1RNW0 (CCHC-type domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_016938 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-08
Identity = 41/69 (59.42%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MQTCGKFGISKRKAFRAITSSPPSSSTEEPSSFTAASKFPIWQQAMIVQFNALIRQGTWD 60
           M T  K GISKRKAF A TS     ST EPSSF AAS+ P WQ AM  +  AL  QGTWD
Sbjct: 473 MTTRSKNGISKRKAFSASTSI--DLSTIEPSSFKAASQSPEWQSAMREEIEALHAQGTWD 532

Query: 61  LTPLPFGKS 70
           L PLP  K+
Sbjct: 533 LVPLPAHKN 539

[Close]

BLAST of Moc11g13820 vs. ExPASy TrEMBL
Match: A0A5H2XJ19 (Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_42S000400 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-08
Identity = 41/69 (59.42%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MQTCGKFGISKRKAFRAITSSPPSSSTEEPSSFTAASKFPIWQQAMIVQFNALIRQGTWD 60
           M T  K GISKRKAF A TS     ST EPSSF AAS+ P WQ AM  +  AL  QGTWD
Sbjct: 547 MTTRSKNGISKRKAFSASTSI--DLSTIEPSSFKAASQSPEWQSAMREEIEALHAQGTWD 606

Query: 61  LTPLPFGKS 70
           L PLP  K+
Sbjct: 607 LVPLPAHKN 613

[Close]

BLAST of Moc11g13820 vs. ExPASy TrEMBL
Match: A0A5E4GMG9 (PREDICTED: Retrovirus-related Pol poly from transposon (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B023657 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.0e-08
Identity = 40/69 (57.97%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1  MQTCGKFGISKRKAFRAITSSPPSSSTEEPSSFTAASKFPIWQQAMIVQFNALIRQGTWD 60
          M T  K GISKRKAF A TS     ST EPSSF AAS+ P WQ AM  +  AL  QGTWD
Sbjct: 18 MTTRSKNGISKRKAFSASTSI--DLSTIEPSSFKAASQSPEWQSAMREEIEALHAQGTWD 77

Query: 61 LTPLPFGKS 70
          L P+P  K+
Sbjct: 78 LVPIPAHKN 84

[Close]

BLAST of Moc11g13820 vs. ExPASy TrEMBL
Match: A0A5A7UKB0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001460 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 2   QTCGKFGISKRKAFRAITSSPPSSSTE-EPSSFTAASKFPIWQQAMIVQFNALIRQGTWD 61
           QT  K GISK+K F A T  P +S  E EPSS+T ASK  +WQ AM  +++AL++QGTW 
Sbjct: 46  QTRSKSGISKKKVFVAATHLPKNSVDENEPSSYTQASKDLVWQNAMKEEYDALLKQGTWK 105

Query: 62  LTPLPFGK 69
           LT LP  K
Sbjct: 106 LTSLPPNK 113

[Close]

BLAST of Moc11g13820 vs. ExPASy TrEMBL
Match: A0A5D3D170 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003000 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 1   MQTCGKFGISKRKAFRAITSSPPSSSTE-EPSSFTAASKFPIWQQAMIVQFNALIRQGTW 60
           MQT  K GISK+K F A T  P +S  E E SS+T ASK  +WQ AM  +++AL++QGTW
Sbjct: 45  MQTRSKSGISKKKVFVAATHLPKNSVDENESSSYTQASKDLVWQNAMKEEYDALLKQGTW 104

Query: 61  DLTPLPFGKS 70
            LT L   K+
Sbjct: 105 KLTSLSPNKT 114

The following BLAST results are available for this feature:

BLAST of Moc11g13820 vs. NCBI nr


Match Name	E-value	Identity	Description
BBH05526.1	6.0e-08	59.42	hypothetical protein Prudu_016938 [Prunus dulcis]	[more]
BBN67324.1	6.0e-08	59.42	transposable element gene [Prunus dulcis]	[more]
VVA41095.1	1.0e-07	57.97	PREDICTED: Retrovirus-related Pol poly from transposon, partial [Prunus dulcis]	[more]
KAA0054997.1	2.3e-07	54.41	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK17991.1	2.5e-06	51.43	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc11g13820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g13820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y1RNW0	2.9e-08	59.42	CCHC-type domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_016938 PE=...	[more]
A0A5H2XJ19	2.9e-08	59.42	Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_42S000400 PE=4 SV...	[more]
A0A5E4GMG9	5.0e-08	57.97	PREDICTED: Retrovirus-related Pol poly from transposon (Fragment) OS=Prunus dulc...	[more]
A0A5A7UKB0	1.1e-07	54.41	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3D170	1.2e-06	51.43	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Moc11g13820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g13820.1	Moc11g13820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016740	transferase activity