Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTTGCTTGTGATACCACTGCTGCTTGTGTTGATTCATCCACTGTGCCTTCTATCTCTATTAGCACTTCTGATATTGGTTGTCCATCTACTTTGCCTGTTGATGGTATGATTAATGGTGCTGAAAATTCTGTTGTACCTACTTCTTCAAATTTGCATCCTATGCAAACAAGGTTAAAACCTGGTATTGTTAAAAAAAGGGTTTTTCTAGTAGCACAGCCTTCTGTTGACAGTATTTTAGAGCCTACGTCCTACACTCAAGCTTCCAAACTTAATGAATGGCAGCAGGCTATGTCCGAAGAGTTTACTACTCTTGTTGACCAGAATATTTGGTCTTTAGTTCCTTTACCCTCTCATAAAAATGTGATTGGCTGCAAATGGGTGTATCGGGTAAAGCGTAATCCGGATGGGAGTGTGGCTCGTTATAAGGCTCGTCTTGTAGCTAAGGGGTTTCATCAGGAGGATGTAGATTATTCTAAGACGTTTAGTCCCGTTGTTAAGAAGCCGACTGTTCTATTGTCCTTTCTTTGGCTGCACACTTTAATTGGCCTCTTCATTAGTTAGACGTTAAGAATGCTTTTCTTAATGGCACTCTTCAAGAGGAAGTATATATGCAACAACCTCAAGGCTTTGTTCATCTTCAATTTCCTCAGCATGTTTGTCGACTTAACAAAGTCCCTTTATGGTCTCAAACAAGCACCCCGTGCTTGGTTTGAGTGCTTCACAACTCAGTTGTTATCTCTTGGCTTTGTTGCATCTTTGTCTGATCCGTCTCTCTTTGTTCGGAATGTTGGTGGCTCTCTCACCTACCTTCTTCTTTATGTTGAGGATGTTATGCTTACTGGGAATGATTTGTCTTACATTGACTTACTGGTTGTTCAATTAAAACAGTCTTTTAATATGACAGATTTGGGCAGCTTGACGTATTTTCTTGGTCTAGAGGTTCAACGTAAGGCTTCAGGCATTTTTGTCACTCAGACTAAGTACACTCGAGATCTTCTCTCGAAATTTGGCATGGCTGAGTTCAAGCCTTGTTTACGCCTTGTTCGGCCGGCTCGTTACATGTTGATTCTCCTATGTGTAGTTCAGAAGATGCCTCTGCCTATCGTAGTATGGTTGGTGCTTTACATACTTGACTTTTACTCGTCTCGACATCTCATTTGCTGTTAGCCGAGTATCTTAGTTCATGCATTCGCCCACTGTGGTTCAGTTAACTGCTGTTAAACGCATCCTTCGTTATCTTCAAGGAACTCTGATGTTGGGCTTATGTTTTCGTTCGTGCTCGTTGCTTCTCACTGCATTCTCTGATTCAGACTGGGTTGGTAATCCTGCTGATCGTCGTTTGACTACGGGCTCGGTAATTTTTCTTGGGCCAAATCCTATTTCGTGGGTTGCTAAAAAGCAAACCACTGTTTCTCGTAGCTCCACTGAGGCTGAGTATCGGGCATTGGCTGCTACCACAGCTGAATTAGCTTGGATTTCTCAACTGTTGAAGGATTTGTTTATTGTTGTTGGCCCTCATACTCTGTTTTGTGACAATCAATCTGCCTTACAGATTGCTCGTAACCCAGTCTTTCATGGGCGTACGAAACACATCGAGGTCGATCTTCATTTTGTTCGCGAACGGGTTGTTTCCAAATCGCTTTCTCTATGTTTCTTGCCTACTGCTCAGCAACCTGCAGATTTATTCACAAAGCCTTTGTCTGCTGATCGTCTTGCATTTTTACGTGGCAAACTCATGCCTTTGCCATTCGTTTGAGGGCATATTGGTTCTAGGGTTACTATTGTAATTTTCTTATTTATTAGTTAGCAAAACTAATTCTGTTTTGCTTATTGGTCTTGTATAAATAGTATTTCCTTTTCATTAATAAAAGTGGGGCCTTAAATTAGTTGAGTCTGGAAAATCCACAAATATAACTATAAAATTAAATTAATAGCATTAACACTATAAATATTGTCAGTACAAAATATAGTGGAAATTGTATTATTTGAATATTAAAATTTACCTTTTAATTTAATTTTATAATTTCAATTAGAAACCAAAAAAAAAAGCCATAAAATTTAATAAGACAAATACGACGTTAATGCCTTAAATTGAAACTCAATACCATATTTTTATTTAAATTAAAACCTATAAACTTCCAAATATCTAATAATAAAGATATGATTAAAATTTTAATTTTAAAAAGATTTGTCTATTTCTATCATAAGTTTAGAGATACGTGTTAACTTGTTTATTATTGCTTGCTGTATTTTAATTATGAAAAATATCAAGTAATTGTTGCTTCTAAAAATTGACTGATGAGATCAATGCAACATCACTTTTGTGTTAGATTCAAAGAAAAAAAATTTGAAAATGTTGATGAGATAAATATGGAGAAAGAAAATAACCGAGGTATTTAACATTTTAACTATTTAATTAAATTTTATTTTTAAATAGTTTAAAATAAAACTATAAATTTTACGTGCATAGCACGTGTTTGTTACTAGTAAAAAAAATGAGATGATTTATTGAACATGTGGGTAAAAGTGAAATTACATGTTAAAGAGGTTTTCAATAACAGATTTGTATGGTTACCCTTCTCACTCTACTTAGTTGGGACCTAAGCAATAATCATAAGCAATCATAGTAAGTCACTTGGAGGGAATGTGTGTAAAAAAATGCCTTTAATGTTATGAACGAGATATATAGCTTTTCAAGTCTCATCCATTTTTATTTCCTCTTTGAAGTATATTATTGTAACTTAATTAGCTTATACTTGATCACTTTTAACCATCATATCCAAATATATAACTAATATACTTATGGAAATTTCGTCGCGATGCAAATGTCGAAACAAAATCATGTATACATACATGAAATTATATTAGTTAGTAAATTAAAATTTAATGTTACTTGATTATGTTTTATTGATAATTTATAATTCAATCTCGTCTTTAGTTACATAATTAAACATTGTAGAACCAAAAAATTTGGGCCAATCATAAACGGTCACGTCATTATCTATTTTATTTAGGGATTAATTATATATTGACCCTAAATTAAAATTAAAGATAATTTGACAATTAAAATATGTAATTGGGTCATATGAGTATTGAGCTTGGAATCGATTTGGTTCACAATCTTGGCCCAAAATCCAATTTATGGATTAATATTTAAATTTAAATAAATCCATTTAAAGAATTGGACTTGGCCCAAAATTACCCAAGCCCAATGACCCACCAAAGCCTATGGAAACCTCTATAAATAGAGGAGACCTCATTCATTTTGGAGGTTAAAAAGTTCAGAATTTCAAAATTGAGAGAATTCACACCAAATTGAAGACTCTCTGAAGACTTGAAGATTCGAAGACCAACTTGAAGACTTTGAACACTTGAAGACTTGAAAACTTTCGAATAACATATAACTTCGATCCAAATTCAAGAATAAGCATTTCAATCTTCACATCAAGTTCGAGAGAAAGAATCAGAGAATAAAGATTAGAGATTGAATCCACTATACAACACATACTACAAATATAAAAGTTCAACTCCACGAAATATAATTTCTCCAGAAATTTCGTGTGAACAAATTGGCACGCCCAGTGGGACAATCTCTACCTCTCATCTCTTTCTCAAGACTTAAAGTTTTTCAAGAAAATCAATGGAATTTAAAAAGGCTTCTACAACAGCTGCTTACATGAGTAACCTTCATATGGGTCATATCAGCTATGGTTGCTCTGATGAATTCCAACTACGGGAACATCAAACTTCTCCTGTTGTTGCAAACAAAGTAATGATGCTGCAAGAAACATCTATTGAAAATGAGTTTCTTGTTAATCATAACCCATTATTTGATCTTAATCCTGACATTGTCTCTGTTATGATGACTCATGCAAGCACTATGGATGAAAAAATGGCTGAAATGGAAAAGAAGCTCGCTACATTGATGAAGACAGTGGAAGAACGAGATTATGAAATCGCTTCCTTGAAGAATCAGATTGAAAACAGAGATCTTGCTGAGTCGAGTCAAATCCTTGCTATTAAGATAAATGACAAGGGACAGACTATCGCTCAAGAAAATCAATCGCAATATTCCACTTCGATCGCTTCGCTGTCTGTTCAACAGCTTCAAGATATGATCACGAACACGATCAGAGCGCAATACGACGGATCTTCTCAAAGCTCCCTCTTGTATTCTAAGCCATATACTAAGAGGATTAATGATCTGAGAATGCCTGTTGGATACCAACCTCCAAAATTCCAACATTTCGATGGGAAGGACAATCCCAAACAACATATTGCTCACTTCGTCGAAACTTGTGAGAATGCTGGTACAAGAGGCGATCAATTGGTCAAGCAGTTCGTCAGAACGTTAAAGGGAAACGCCTTTGACTGGTATACTGATCTCGAGCCTGAAACGATCAAGAGTTGGGAACAGCTTGAAAGATGGCTAAGCTTGAAGGAAAGACAAGAAAATGTCTATCCTTTTCCTGATTCCGATATCCCTTATATGTTGGAACAACTACTGAAAACACGACTGATAGTACTTCCTGAGTGTATACGGCCAGAAGAAATGGGTAAAGTTGATAATCCAAAACATTGCAAGTACCACTGAGTTATCAGTCATCCAGTGGAAAAATGTTTTGTCATAAAAGAGAGTTTCCTAAATTTAGCTCGAGAAGGAAAGATTGAGTTGGATTTCAATGAAATAGCTCAATCAAATCACGATGCAGTAACAACAAATATAGGCAGCCAAACACCTCAAAGTCTATTCTACAATAAGGGGATAGACTTGATCCAATTTGGAACGTTGAAGCCTATATCTGTTCGCTCTCAATGGAAGACTTCAAGAAATGTCATTAAAGATGTTGTCAAATCTGTTGATCAGGGAGAGGAAAATTGGGCTACTGTGACTCGTCAGAAGAAACAAAAACAAAGTTTTGCTCAGAAGAAGTCATCTATGCTCAGCAAAGAGCATGAACACCAAGGAAAGAAGGATTCAAGGAAGCCTAAATCAGAGAGGAAAGAAAATAAAGACTCATTTCGACCCCAGATATCGGCGACCTTAAAAAAATTCTCCCCAAAAAAATTATTCTATATCAAAAAGAAGAAAGAAAATCTGGCAAGTTCACATTACGTAAATGTGGAAGAAATTGACAACTCTAAAATAACTGAGCAAATGACTTCTGTATTCGATCGCATCAAGCCTTCAGCTACTCGACTTTCAGTCTTTCAGAGGATGAGTATGACCACTGCAAAAGAGGAAAGTCAATGTGTTACATACATCCCCATTCGATCTTCAGTATTTCAAAGGCTAAGCATCTCCACGTCAAAGAAAAATCAATATTTGAAATCTATTTTTGATCGTCTTGAAGTGTCAAACGATCAATACGAAAGAATGATGAAGACCGTGGAAGCAAAATCATCTGATGAAGTGAATGATGAGAAGAAAATTTACAGCATTGTTCCTTCACTTATGAAAAGAAAATTCTCCATTCTCATAAATACAGAAGGTTCCTTAAAAGTAAAACAAAAGCTTTTCATCTCAACCAATCCTGAAAATGGAGGATATAGAAATTGTGATGAAAATGAGAGCATTTGA
mRNA sequence
ATGTCTGTTGCTTGTGATACCACTGCTGCTTGTGTTGATTCATCCACTGTGCCTTCTATCTCTATTAGCACTTCTGATATTGGTTGTCCATCTACTTTGCCTGTTGATGGTATGATTAATGGTGCTGAAAATTCTGTTGTACCTACTTCTTCAAATTTGCATCCTATGCAAACAAGCTATGGTTGCTCTGATGAATTCCAACTACGGGAACATCAAACTTCTCCTGTTGTTGCAAACAAAGTAATGATGCTGCAAGAAACATCTATTGAAAATGAGTTTCTTGTTAATCATAACCCATTATTTGATCTTAATCCTGACATTGTCTCTGTTATGATGACTCATGCAAGCACTATGGATGAAAAAATGGCTGAAATGGAAAAGAAGCTCGCTACATTGATGAAGACAGTGGAAGAACGAGATTATGAAATCGCTTCCTTGAAGAATCAGATTGAAAACAGAGATCTTGCTGAGTCGAGTCAAATCCTTGCTATTAAGATAAATGACAAGGGACAGACTATCGCTCAAGAAAATCAATCGCAATATTCCACTTCGATCGCTTCGCTGTCTGTTCAACAGCTTCAAGATATGATCACGAACACGATCAGAGCGCAATACGACGGATCTTCTCAAAGCTCCCTCTTGTATTCTAAGCCATATACTAAGAGGATTAATGATCTGAGAATGCCTGTTGGATACCAACCTCCAAAATTCCAACATTTCGATGGGAAGGACAATCCCAAACAACATATTGCTCACTTCGTCGAAACTTGTGAGAATGCTGGTACAAGAGGCGATCAATTGGTCAAGCAGTTCGTCAGAACGTTAAAGGGAAACGCCTTTGACTGGTATACTGATCTCGAGCCTGAAACGATCAAGAGTTGGGAACAGCTTGAAAGATGGCTAAGCTTGAAGGAAAGACAAGAAAATGTCTATCCTTTTCCTGATTCCGATATCCCTTATATGTTGGAACAACTACTGAAAACACGACTGATAGTACTTCCTGAGTGTATACGGCCAGAAGAAATGGCTCGAGAAGGAAAGATTGAGTTGGATTTCAATGAAATAGCTCAATCAAATCACGATGCAGTAACAACAAATATAGGCAGCCAAACACCTCAAAGTCTATTCTACAATAAGGGGATAGACTTGATCCAATTTGGAACGTTGAAGCCTATATCTGTTCGCTCTCAATGGAAGACTTCAAGAAATGTCATTAAAGATGTTGTCAAATCTGTTGATCAGGGAGAGGAAAATTGGGCTACTGTGACTCGTCAGAAGAAACAAAAACAAAGTTTTGCTCAGAAGAAGTCATCTATGCTCAGCAAAGAGCATGAACACCAAGGAAAGAAGGATTCAAGGAAGCCTAAATCAGAGAGGAAAGAAAATAAAGACTCATTTCGACCCCAGATATCGGCGACCTTAAAAAAATTCTCCCCAAAAAAATTATTCTATATCAAAAAGAAGAAAGAAAATCTGGCAAGTTCACATTACGTAAATGTGGAAGAAATTGACAACTCTAAAATAACTGAGCAAATGACTTCTGTATTCGATCGCATCAAGCCTTCAGCTACTCGACTTTCAGTCTTTCAGAGGATGAGTATGACCACTGCAAAAGAGGAAAGTCAATGTGTTACATACATCCCCATTCGATCTTCAGTATTTCAAAGGCTAAGCATCTCCACGTCAAAGAAAAATCAATATTTGAAATCTATTTTTGATCGTCTTGAAGTGTCAAACGATCAATACGAAAGAATGATGAAGACCGTGGAAGCAAAATCATCTGATGAAGTGAATGATGAGAAGAAAATTTACAGCATTGTTCCTTCACTTATGAAAAGAAAATTCTCCATTCTCATAAATACAGAAGGTTCCTTAAAAGTAAAACAAAAGCTTTTCATCTCAACCAATCCTGAAAATGGAGGATATAGAAATTGTGATGAAAATGAGAGCATTTGA
Coding sequence (CDS)
ATGTCTGTTGCTTGTGATACCACTGCTGCTTGTGTTGATTCATCCACTGTGCCTTCTATCTCTATTAGCACTTCTGATATTGGTTGTCCATCTACTTTGCCTGTTGATGGTATGATTAATGGTGCTGAAAATTCTGTTGTACCTACTTCTTCAAATTTGCATCCTATGCAAACAAGCTATGGTTGCTCTGATGAATTCCAACTACGGGAACATCAAACTTCTCCTGTTGTTGCAAACAAAGTAATGATGCTGCAAGAAACATCTATTGAAAATGAGTTTCTTGTTAATCATAACCCATTATTTGATCTTAATCCTGACATTGTCTCTGTTATGATGACTCATGCAAGCACTATGGATGAAAAAATGGCTGAAATGGAAAAGAAGCTCGCTACATTGATGAAGACAGTGGAAGAACGAGATTATGAAATCGCTTCCTTGAAGAATCAGATTGAAAACAGAGATCTTGCTGAGTCGAGTCAAATCCTTGCTATTAAGATAAATGACAAGGGACAGACTATCGCTCAAGAAAATCAATCGCAATATTCCACTTCGATCGCTTCGCTGTCTGTTCAACAGCTTCAAGATATGATCACGAACACGATCAGAGCGCAATACGACGGATCTTCTCAAAGCTCCCTCTTGTATTCTAAGCCATATACTAAGAGGATTAATGATCTGAGAATGCCTGTTGGATACCAACCTCCAAAATTCCAACATTTCGATGGGAAGGACAATCCCAAACAACATATTGCTCACTTCGTCGAAACTTGTGAGAATGCTGGTACAAGAGGCGATCAATTGGTCAAGCAGTTCGTCAGAACGTTAAAGGGAAACGCCTTTGACTGGTATACTGATCTCGAGCCTGAAACGATCAAGAGTTGGGAACAGCTTGAAAGATGGCTAAGCTTGAAGGAAAGACAAGAAAATGTCTATCCTTTTCCTGATTCCGATATCCCTTATATGTTGGAACAACTACTGAAAACACGACTGATAGTACTTCCTGAGTGTATACGGCCAGAAGAAATGGCTCGAGAAGGAAAGATTGAGTTGGATTTCAATGAAATAGCTCAATCAAATCACGATGCAGTAACAACAAATATAGGCAGCCAAACACCTCAAAGTCTATTCTACAATAAGGGGATAGACTTGATCCAATTTGGAACGTTGAAGCCTATATCTGTTCGCTCTCAATGGAAGACTTCAAGAAATGTCATTAAAGATGTTGTCAAATCTGTTGATCAGGGAGAGGAAAATTGGGCTACTGTGACTCGTCAGAAGAAACAAAAACAAAGTTTTGCTCAGAAGAAGTCATCTATGCTCAGCAAAGAGCATGAACACCAAGGAAAGAAGGATTCAAGGAAGCCTAAATCAGAGAGGAAAGAAAATAAAGACTCATTTCGACCCCAGATATCGGCGACCTTAAAAAAATTCTCCCCAAAAAAATTATTCTATATCAAAAAGAAGAAAGAAAATCTGGCAAGTTCACATTACGTAAATGTGGAAGAAATTGACAACTCTAAAATAACTGAGCAAATGACTTCTGTATTCGATCGCATCAAGCCTTCAGCTACTCGACTTTCAGTCTTTCAGAGGATGAGTATGACCACTGCAAAAGAGGAAAGTCAATGTGTTACATACATCCCCATTCGATCTTCAGTATTTCAAAGGCTAAGCATCTCCACGTCAAAGAAAAATCAATATTTGAAATCTATTTTTGATCGTCTTGAAGTGTCAAACGATCAATACGAAAGAATGATGAAGACCGTGGAAGCAAAATCATCTGATGAAGTGAATGATGAGAAGAAAATTTACAGCATTGTTCCTTCACTTATGAAAAGAAAATTCTCCATTCTCATAAATACAGAAGGTTCCTTAAAAGTAAAACAAAAGCTTTTCATCTCAACCAATCCTGAAAATGGAGGATATAGAAATTGTGATGAAAATGAGAGCATTTGA
Protein sequence
MSVACDTTAACVDSSTVPSISISTSDIGCPSTLPVDGMINGAENSVVPTSSNLHPMQTSYGCSDEFQLREHQTSPVVANKVMMLQETSIENEFLVNHNPLFDLNPDIVSVMMTHASTMDEKMAEMEKKLATLMKTVEERDYEIASLKNQIENRDLAESSQILAIKINDKGQTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRMPVGYQPPKFQHFDGKDNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLEPETIKSWEQLERWLSLKERQENVYPFPDSDIPYMLEQLLKTRLIVLPECIRPEEMAREGKIELDFNEIAQSNHDAVTTNIGSQTPQSLFYNKGIDLIQFGTLKPISVRSQWKTSRNVIKDVVKSVDQGEENWATVTRQKKQKQSFAQKKSSMLSKEHEHQGKKDSRKPKSERKENKDSFRPQISATLKKFSPKKLFYIKKKKENLASSHYVNVEEIDNSKITEQMTSVFDRIKPSATRLSVFQRMSMTTAKEESQCVTYIPIRSSVFQRLSISTSKKNQYLKSIFDRLEVSNDQYERMMKTVEAKSSDEVNDEKKIYSIVPSLMKRKFSILINTEGSLKVKQKLFISTNPENGGYRNCDENESI
Homology
BLAST of Moc11g13730 vs. NCBI nr
Match:
KAA0065303.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 432.2 bits (1110), Expect = 8.1e-117
Identity = 287/660 (43.48%), Postives = 383/660 (58.03%), Query Frame = 0
Query: 104 NPDIVSVMMTHASTMDEKMAEMEKKLATLMKTVEERDYEIASLKNQIENRDLAESSQILA 163
+P+I+SVM+ + T + +MAE+EKK+ LMK VEERDYEIA LKN IE+RD AESS
Sbjct: 78 HPNIMSVMVANVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHT 137
Query: 164 IKINDKGQTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRI 223
+K DKG+ + QE+Q Q STSIASLSVQQLQ+MI ++I+ QY G +Q+ LYSKPYTKRI
Sbjct: 138 VKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRI 197
Query: 224 NDLRMPVGYQPPKFQHFDGKDNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWY 283
++LRMP GYQPPKFQ FDGK NPKQH+A+F+ETCE AGTRGD LVKQFVRTLKGNAFDWY
Sbjct: 198 DNLRMPNGYQPPKFQQFDGKGNPKQHVAYFIETCETAGTRGDLLVKQFVRTLKGNAFDWY 257
Query: 284 TDLEPETIKSWEQLE--------------------------------------------- 343
DLEPE+I +WEQLE
Sbjct: 258 IDLEPESINNWEQLERDFLNRFYSIRRIGIKPRTFEELATRAHDMELSIANRGAKDFLIP 317
Query: 344 ---------------------------------------------------RWLSLKERQ 403
R +LKERQ
Sbjct: 318 KSRSDKNKLDDTKKIANSVIKESMVVHATPLKSFSKRKEIKIERKHDGDEKRQSTLKERQ 377
Query: 404 ENVYPFPDSDIP--YMLEQLLKTRLIVLPECIRPEEMAREGKIELDFNEIAQSNHDAV-- 463
E VYPFPDSD+ + +E+ + ++L ++ARE KIELD +E+AQ+NH A+
Sbjct: 378 EKVYPFPDSDVADIHPVEKCFVLKELIL-------KLAREKKIELDIDEVAQTNHVAIEM 437
Query: 464 TTNIGSQTPQSLFYNKGIDLIQFGTLKPISVRSQWK-TSRNVIKDVVKSVDQGEENWATV 523
T+N+ P + ++ LIQFGT PI V Q + + N D G E W TV
Sbjct: 438 TSNV---PPLTQLDDQRKSLIQFGTSTPILVLFQQRIVTINSQNKEAHGKDDG-EGWITV 497
Query: 524 TRQKKQKQSFAQK------KSSMLSKEHEHQGKKDSR--KPKSERKENKDSFRPQISATL 583
TRQK ++ +F QK K + S ++ +G+++ + PK + +++D + + S TL
Sbjct: 498 TRQKGRQPNFIQKQLRFHQKYAKGSISYKKKGRRNKKMWNPKPIKGKDEDFLQLRRSITL 557
Query: 584 KKFSPKKLFYIKKKKENL-------------ASSHYVNVEEIDNSKITEQMTSVFDRIKP 642
+F P+ +++ E + ++Y + +E++NS Q TS FDRIKP
Sbjct: 558 AEFLPRS--FLEDHPEEILEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSDFDRIKP 617
BLAST of Moc11g13730 vs. NCBI nr
Match:
KAA0033746.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 422.2 bits (1084), Expect = 8.3e-114
Identity = 304/769 (39.53%), Postives = 401/769 (52.15%), Query Frame = 0
Query: 70 EHQTSPVVANKVMMLQ-ETSIENEFLVNHNPLF------------DLNPDIVSVMMTHAS 129
+ Q V K+ + Q S + ++ NPLF + + ++VSVMM
Sbjct: 31 QEQEQGFVLKKISLEQLIESPKGGIIIRDNPLFNNSMPASNLSNKESHLEVVSVMMVDV- 90
Query: 130 TMDEKMAEMEKKLATLMKTVEERDYEIASLKNQIENRDLAESSQILAIKINDKGQTIAQE 189
T + M EME+K+ LMK EERD+EIA+LK+Q++ ESSQ +K DKG+ + QE
Sbjct: 91 TAEATMEEMERKINFLMKNFEERDHEIAALKDQMKACKTGESSQTPVVKATDKGKNVVQE 150
Query: 190 NQ-SQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRMPVGYQPP 249
NQ Q S S+ASLSVQQLQDMI N+IRAQY G Q+S +YSK YTKRI++LRMP+GYQPP
Sbjct: 151 NQPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQTSFMYSKSYTKRIDNLRMPLGYQPP 210
Query: 250 KFQHFDGKDNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLEPETIKSWE 309
KFQ FDGK NPKQHIAHFVETCENAG+RGDQLV+QFVR+LKGNAF+WYTDLEPE +
Sbjct: 211 KFQQFDGKGNPKQHIAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPEGEPVID 270
Query: 310 QLERWL------------------------------------------------------ 369
+ RW
Sbjct: 271 YINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPRTFEELSTRAHDMELSIA 330
Query: 370 ------------------------------------------------------------ 429
Sbjct: 331 NIGAKDFLVQRTKRSDKNEINDTKKIANNILNESMLVQETPLKSFSKRKETKHERNYDGD 390
Query: 430 -----SLKERQENVYPFPDSDIPYMLEQLLKTRLIVLPECIRPEE--------------- 489
+L+ERQ+ VYPFPDSD+ MLEQL++ +LI LPEC RPE+
Sbjct: 391 EKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQLIQLPECKRPEQAGKVDDPNYCKYHRV 450
Query: 490 -----------------MAREGKIELDFNEIAQSNHDAVTTNIGSQTPQSLFYNKGIDLI 549
+ARE KIELD +E+AQ+NH AV S P L Y++ LI
Sbjct: 451 ISHPVEKCFVLKELILKLARENKIELDIDEVAQTNHVAVNMT-SSVLPSILLYDQRESLI 510
Query: 550 QFGTLKPISVRSQWKT-SRNVIKDVVKSVDQGEENWATVTRQKKQKQSFAQKKSSMLSK- 609
QFGT +PI VR Q KT + N S D+GEE W VT +K+++ Q S+ K
Sbjct: 511 QFGTFEPILVRFQQKTMTSNSQNKEETSEDEGEE-WIGVTHKKERQIGSVQTNSNFHQKH 570
Query: 610 -----EHEHQGKKDSR--KPKSERKENKDSFRPQISATLKKFSPKKLFYIKKKKENL--- 651
H+ +G+++ + KPK + ++KD F+P+ S L +F P+ +++ E +
Sbjct: 571 SKGNISHKKKGRRNKKMWKPKPIKGKDKDFFQPRRSINLAEFLPRS--FLEDHPEKILEV 630
BLAST of Moc11g13730 vs. NCBI nr
Match:
KAA0056218.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 402.9 bits (1034), Expect = 5.2e-108
Identity = 279/641 (43.53%), Postives = 376/641 (58.66%), Query Frame = 0
Query: 68 LREHQTSPVVANKVMMLQETSIENEFLVNHNPLFDLNPDIVSVMMTHASTMDEKMAEMEK 127
++E + V+ K + S + ++ NPLF+ + T AS + +K + +E
Sbjct: 30 MQEQEQGFVLKKKSLEQLIESPKGRIIIRDNPLFNNS--------TPASNLSDKESHLE- 89
Query: 128 KLATLMKTVEERDYEIASLKNQIENRDLAESSQILAIKINDKGQTIAQENQ-SQYSTSIA 187
+ +V RD+EIA+LK QI+ + AESSQ +K DKG+ + QENQ Q S S+A
Sbjct: 90 -----VVSVMMRDHEIAALKAQIKACETAESSQTPVVKATDKGKNVVQENQPQQQSVSVA 149
Query: 188 SLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRMPVGYQPPKFQHFDGKDNP 247
SLSVQQLQDMI N+IRAQY G Q+S +YSKPYTKRI++LRMP+GYQPPKFQ FDGK NP
Sbjct: 150 SLSVQQLQDMIANSIRAQYGGPLQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNP 209
Query: 248 KQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLEPETIKSWEQLE-----RWL 307
KQHIAHFVETCENAG+RGDQLV+QFVR+LKGNAF+WYTDLEPE I SWEQLE R+
Sbjct: 210 KQHIAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLEIEFLNRFY 269
Query: 308 SLK----------ERQENVYPFPD---------SDIPYMLEQLLKT-------RLIVLPE 367
S + +Q P D D L +L +LI LPE
Sbjct: 270 STRLVVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCTQDKQLIQLPE 329
Query: 368 CIRPEE--------------------------------MAREGKIELDFNEIAQSNHDAV 427
C RPE+ +ARE KIELD +E+AQ+NH AV
Sbjct: 330 CKRPEQAGKVDDPNYCKYHRVICHPVEKCFVLKELILKLARENKIELDIDEVAQTNHVAV 389
Query: 428 TTNIGSQTPQS-LFYNKGIDLIQFGTLKPISVRSQWKT-SRNVIKDVVKSVDQGEENWAT 487
N+ S P S L Y++ LIQFGT +PI VR Q KT + N S D+GEE
Sbjct: 390 --NMTSSVPPSILLYDQRESLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDEGEERIGV 449
Query: 488 VTRQKKQKQSFA-----QKKSSMLSKEHEHQGKKDSR--KPKSERKENKDSFRPQISATL 547
++++Q S +K S + H+ +G+++ + KPK + +++D +P+ S TL
Sbjct: 450 AHKKERQTSSVQMNSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKDEDFLQPRRSITL 509
Query: 548 KKFSPKKLFYIKKKKENL-------------ASSHYVNVEEIDNSKITEQMTSVFDRIKP 607
+F P+ +++ E + ++Y + EE+DNS +Q TSVFDRIKP
Sbjct: 510 AEFLPRS--FLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDRIKP 569
Query: 608 SATRLSVFQRMSMTTAKEESQCVTYIPIRSSVFQRLSISTSKKNQYLKSIFDRLEVSNDQ 623
TR SVFQR+SM T KEE++C T R+S F+RLSISTSKK++ +FDRL+++NDQ
Sbjct: 570 LTTRSSVFQRLSMATKKEENKCPTSTYTRTSAFKRLSISTSKKHRPSTFVFDRLKMTNDQ 629
BLAST of Moc11g13730 vs. NCBI nr
Match:
TYK03695.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 398.3 bits (1022), Expect = 1.3e-106
Identity = 294/790 (37.22%), Postives = 397/790 (50.25%), Query Frame = 0
Query: 59 SYGCSDEFQLREHQTSPVVANKVMMLQETSIENEFLVNHNPLFDLN-------------P 118
++ CS E Q E VA + + ++ NP D + P
Sbjct: 20 THSCSREIQSFEDMPPFEVAKNIWEQISKPPKGGIVIKENPAVDEHNSLSECSNEEVPQP 79
Query: 119 DIVSVMMTHASTMDEKMAEMEKKLATLMKTVEERDYEIASLKNQIENRDLAESSQILAIK 178
+I+SVM+T+ T + +MAE+EKK+ LMK VEERDYEIA LKN IE+RD AESS +K
Sbjct: 80 NIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVK 139
Query: 179 INDKGQTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRIND 238
DKG+ + QE+Q Q STSIASLSVQQLQ+MI ++I+ QY G +Q+ LYSKPYTKRI++
Sbjct: 140 NTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDN 199
Query: 239 LRMPVGYQPPKFQHFDGKDNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTD 298
LRMP GYQPPKFQ FDGK NPKQH+AHF+ETCE AGTRGD LVKQFVRTLKGNAFD Y D
Sbjct: 200 LRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDLYMD 259
Query: 299 LEPETIKSWEQLER---------------------------------------------- 358
LEPE+I +WEQLER
Sbjct: 260 LEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYINRWRALSLDCKDR 319
Query: 359 ---------------W-------------------------------------------- 418
W
Sbjct: 320 LTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIPNRGAKDFLIPKSRSD 379
Query: 419 ------------------------------------------------LSLKERQENVYP 478
+LKERQE VYP
Sbjct: 380 KNELNDTKKIANSVIKESMVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYP 439
Query: 479 FPDSDIPYMLEQLLKTRLIVLPECIRPEE------------------------------- 538
F DSD+ MLEQLL+ +LI LP+C RP++
Sbjct: 440 FSDSDVADMLEQLLENQLIQLPKCKRPKQAEKVDDPNYCKYHRVISHPVEKCFVLKELIL 499
Query: 539 -MAREGKIELDFNEIAQSNHDAV--TTNIGSQTPQSLFYNKGIDLIQFGT-----LKPIS 598
+ARE KIEL+ +E+AQ+NH A+ T+N+ P + ++ LIQFGT + ++
Sbjct: 500 KLAREKKIELNIDEVAQTNHVAIEMTSNV---PPLTQLDDQRKSLIQFGTSILFQQRIVT 559
Query: 599 VRSQWKTSRNVIKDVVKSVDQGEENWATVTRQKKQKQSFAQKKSSMLSK------EHEHQ 623
+ SQ K + KD +E W TVTRQK ++ + QK+S K H+ +
Sbjct: 560 INSQNKEAHG--KD-------DDEGWITVTRQKGRQPNSIQKESQFHQKYAKGSISHKKK 619
BLAST of Moc11g13730 vs. NCBI nr
Match:
KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 393.7 bits (1010), Expect = 3.2e-105
Identity = 265/609 (43.51%), Postives = 348/609 (57.14%), Query Frame = 0
Query: 171 QTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRMP 230
+ + QENQ Q S S+ASLSVQQLQDMI N+IRAQY G Q+S +YSK YTKRI++LRMP
Sbjct: 8 KNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQTSFMYSKSYTKRIDNLRMP 67
Query: 231 VGYQPPKFQHFDGKDNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLEPE 290
+GYQPPKFQ FDGK NPKQHIAHFVETCENAG+RGDQLV+QFVR+LKGNAF+WYTDLEPE
Sbjct: 68 LGYQPPKFQQFDGKGNPKQHIAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPE 127
Query: 291 TIK--SWEQL-------------------------------------------------- 350
IK ++E+L
Sbjct: 128 GIKPRTFEELATRAHDMELSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQE 187
Query: 351 ----------------------ERWLSLKERQENVYPFPDSDIPYMLEQLLKTRLIVLPE 410
+R +L+ERQ+ VYPFPDSD+ MLEQL++ +LI LP+
Sbjct: 188 TPLKSFSKRKERKHERNHNGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQLIQLPK 247
Query: 411 CIRPEE--------------------------------MAREGKIELDFNEIAQSNHDAV 470
C RPE+ + RE KIELD +E+AQ+NH AV
Sbjct: 248 CKRPEQAGKVDDPNYCKYHRVISHHVEKCFVLKELILKLTRENKIELDIDEVAQTNHVAV 307
Query: 471 TTNIGSQTPQS-LFYNKGIDLIQFGTLKPISVRSQWKTSRNVIKDVVKSVDQGEENWATV 530
N+ S P S L Y++ LIQFGT +PI VR Q K + ++ + ++ E W V
Sbjct: 308 --NMTSSVPPSILLYDQRESLIQFGTFEPILVRFQQKVMTSNSQNKEEPIEDEGEEWIVV 367
Query: 531 TRQKKQKQSFAQKKSSMLSK------EHEHQGKKDSR--KPKSERKENKDSFRPQISATL 590
+K+++ S Q S K H+ +G+++ + K K + +++D +P+ S TL
Sbjct: 368 AHKKERQTSSVQTNSHFHQKHSKGNISHKKKGRRNKKMWKSKPIKGKDEDFLQPRQSITL 427
Query: 591 KKFSPKKLFYIKKKKENLA------------SSHYVNVEEIDNSKITEQMTSVFDRIKPS 650
+F P+ F KE L ++Y + EE+DNS +Q TSVFDRIKP
Sbjct: 428 AEFFPRS-FLEDHPKEILEVTACHTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDRIKPL 487
BLAST of Moc11g13730 vs. ExPASy TrEMBL
Match:
A0A5A7VAV4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00190 PE=4 SV=1)
HSP 1 Score: 432.2 bits (1110), Expect = 3.9e-117
Identity = 287/660 (43.48%), Postives = 383/660 (58.03%), Query Frame = 0
Query: 104 NPDIVSVMMTHASTMDEKMAEMEKKLATLMKTVEERDYEIASLKNQIENRDLAESSQILA 163
+P+I+SVM+ + T + +MAE+EKK+ LMK VEERDYEIA LKN IE+RD AESS
Sbjct: 78 HPNIMSVMVANVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHT 137
Query: 164 IKINDKGQTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRI 223
+K DKG+ + QE+Q Q STSIASLSVQQLQ+MI ++I+ QY G +Q+ LYSKPYTKRI
Sbjct: 138 VKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRI 197
Query: 224 NDLRMPVGYQPPKFQHFDGKDNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWY 283
++LRMP GYQPPKFQ FDGK NPKQH+A+F+ETCE AGTRGD LVKQFVRTLKGNAFDWY
Sbjct: 198 DNLRMPNGYQPPKFQQFDGKGNPKQHVAYFIETCETAGTRGDLLVKQFVRTLKGNAFDWY 257
Query: 284 TDLEPETIKSWEQLE--------------------------------------------- 343
DLEPE+I +WEQLE
Sbjct: 258 IDLEPESINNWEQLERDFLNRFYSIRRIGIKPRTFEELATRAHDMELSIANRGAKDFLIP 317
Query: 344 ---------------------------------------------------RWLSLKERQ 403
R +LKERQ
Sbjct: 318 KSRSDKNKLDDTKKIANSVIKESMVVHATPLKSFSKRKEIKIERKHDGDEKRQSTLKERQ 377
Query: 404 ENVYPFPDSDIP--YMLEQLLKTRLIVLPECIRPEEMAREGKIELDFNEIAQSNHDAV-- 463
E VYPFPDSD+ + +E+ + ++L ++ARE KIELD +E+AQ+NH A+
Sbjct: 378 EKVYPFPDSDVADIHPVEKCFVLKELIL-------KLAREKKIELDIDEVAQTNHVAIEM 437
Query: 464 TTNIGSQTPQSLFYNKGIDLIQFGTLKPISVRSQWK-TSRNVIKDVVKSVDQGEENWATV 523
T+N+ P + ++ LIQFGT PI V Q + + N D G E W TV
Sbjct: 438 TSNV---PPLTQLDDQRKSLIQFGTSTPILVLFQQRIVTINSQNKEAHGKDDG-EGWITV 497
Query: 524 TRQKKQKQSFAQK------KSSMLSKEHEHQGKKDSR--KPKSERKENKDSFRPQISATL 583
TRQK ++ +F QK K + S ++ +G+++ + PK + +++D + + S TL
Sbjct: 498 TRQKGRQPNFIQKQLRFHQKYAKGSISYKKKGRRNKKMWNPKPIKGKDEDFLQLRRSITL 557
Query: 584 KKFSPKKLFYIKKKKENL-------------ASSHYVNVEEIDNSKITEQMTSVFDRIKP 642
+F P+ +++ E + ++Y + +E++NS Q TS FDRIKP
Sbjct: 558 AEFLPRS--FLEDHPEEILEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSDFDRIKP 617
BLAST of Moc11g13730 vs. ExPASy TrEMBL
Match:
A0A5A7SUW1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G002250 PE=4 SV=1)
HSP 1 Score: 422.2 bits (1084), Expect = 4.0e-114
Identity = 304/769 (39.53%), Postives = 401/769 (52.15%), Query Frame = 0
Query: 70 EHQTSPVVANKVMMLQ-ETSIENEFLVNHNPLF------------DLNPDIVSVMMTHAS 129
+ Q V K+ + Q S + ++ NPLF + + ++VSVMM
Sbjct: 31 QEQEQGFVLKKISLEQLIESPKGGIIIRDNPLFNNSMPASNLSNKESHLEVVSVMMVDV- 90
Query: 130 TMDEKMAEMEKKLATLMKTVEERDYEIASLKNQIENRDLAESSQILAIKINDKGQTIAQE 189
T + M EME+K+ LMK EERD+EIA+LK+Q++ ESSQ +K DKG+ + QE
Sbjct: 91 TAEATMEEMERKINFLMKNFEERDHEIAALKDQMKACKTGESSQTPVVKATDKGKNVVQE 150
Query: 190 NQ-SQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRMPVGYQPP 249
NQ Q S S+ASLSVQQLQDMI N+IRAQY G Q+S +YSK YTKRI++LRMP+GYQPP
Sbjct: 151 NQPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQTSFMYSKSYTKRIDNLRMPLGYQPP 210
Query: 250 KFQHFDGKDNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLEPETIKSWE 309
KFQ FDGK NPKQHIAHFVETCENAG+RGDQLV+QFVR+LKGNAF+WYTDLEPE +
Sbjct: 211 KFQQFDGKGNPKQHIAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPEGEPVID 270
Query: 310 QLERWL------------------------------------------------------ 369
+ RW
Sbjct: 271 YINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPRTFEELSTRAHDMELSIA 330
Query: 370 ------------------------------------------------------------ 429
Sbjct: 331 NIGAKDFLVQRTKRSDKNEINDTKKIANNILNESMLVQETPLKSFSKRKETKHERNYDGD 390
Query: 430 -----SLKERQENVYPFPDSDIPYMLEQLLKTRLIVLPECIRPEE--------------- 489
+L+ERQ+ VYPFPDSD+ MLEQL++ +LI LPEC RPE+
Sbjct: 391 EKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQLIQLPECKRPEQAGKVDDPNYCKYHRV 450
Query: 490 -----------------MAREGKIELDFNEIAQSNHDAVTTNIGSQTPQSLFYNKGIDLI 549
+ARE KIELD +E+AQ+NH AV S P L Y++ LI
Sbjct: 451 ISHPVEKCFVLKELILKLARENKIELDIDEVAQTNHVAVNMT-SSVLPSILLYDQRESLI 510
Query: 550 QFGTLKPISVRSQWKT-SRNVIKDVVKSVDQGEENWATVTRQKKQKQSFAQKKSSMLSK- 609
QFGT +PI VR Q KT + N S D+GEE W VT +K+++ Q S+ K
Sbjct: 511 QFGTFEPILVRFQQKTMTSNSQNKEETSEDEGEE-WIGVTHKKERQIGSVQTNSNFHQKH 570
Query: 610 -----EHEHQGKKDSR--KPKSERKENKDSFRPQISATLKKFSPKKLFYIKKKKENL--- 651
H+ +G+++ + KPK + ++KD F+P+ S L +F P+ +++ E +
Sbjct: 571 SKGNISHKKKGRRNKKMWKPKPIKGKDKDFFQPRRSINLAEFLPRS--FLEDHPEKILEV 630
BLAST of Moc11g13730 vs. ExPASy TrEMBL
Match:
A0A5A7UM99 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold731G00010 PE=4 SV=1)
HSP 1 Score: 402.9 bits (1034), Expect = 2.5e-108
Identity = 279/641 (43.53%), Postives = 376/641 (58.66%), Query Frame = 0
Query: 68 LREHQTSPVVANKVMMLQETSIENEFLVNHNPLFDLNPDIVSVMMTHASTMDEKMAEMEK 127
++E + V+ K + S + ++ NPLF+ + T AS + +K + +E
Sbjct: 30 MQEQEQGFVLKKKSLEQLIESPKGRIIIRDNPLFNNS--------TPASNLSDKESHLE- 89
Query: 128 KLATLMKTVEERDYEIASLKNQIENRDLAESSQILAIKINDKGQTIAQENQ-SQYSTSIA 187
+ +V RD+EIA+LK QI+ + AESSQ +K DKG+ + QENQ Q S S+A
Sbjct: 90 -----VVSVMMRDHEIAALKAQIKACETAESSQTPVVKATDKGKNVVQENQPQQQSVSVA 149
Query: 188 SLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRMPVGYQPPKFQHFDGKDNP 247
SLSVQQLQDMI N+IRAQY G Q+S +YSKPYTKRI++LRMP+GYQPPKFQ FDGK NP
Sbjct: 150 SLSVQQLQDMIANSIRAQYGGPLQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNP 209
Query: 248 KQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLEPETIKSWEQLE-----RWL 307
KQHIAHFVETCENAG+RGDQLV+QFVR+LKGNAF+WYTDLEPE I SWEQLE R+
Sbjct: 210 KQHIAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLEIEFLNRFY 269
Query: 308 SLK----------ERQENVYPFPD---------SDIPYMLEQLLKT-------RLIVLPE 367
S + +Q P D D L +L +LI LPE
Sbjct: 270 STRLVVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCTQDKQLIQLPE 329
Query: 368 CIRPEE--------------------------------MAREGKIELDFNEIAQSNHDAV 427
C RPE+ +ARE KIELD +E+AQ+NH AV
Sbjct: 330 CKRPEQAGKVDDPNYCKYHRVICHPVEKCFVLKELILKLARENKIELDIDEVAQTNHVAV 389
Query: 428 TTNIGSQTPQS-LFYNKGIDLIQFGTLKPISVRSQWKT-SRNVIKDVVKSVDQGEENWAT 487
N+ S P S L Y++ LIQFGT +PI VR Q KT + N S D+GEE
Sbjct: 390 --NMTSSVPPSILLYDQRESLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDEGEERIGV 449
Query: 488 VTRQKKQKQSFA-----QKKSSMLSKEHEHQGKKDSR--KPKSERKENKDSFRPQISATL 547
++++Q S +K S + H+ +G+++ + KPK + +++D +P+ S TL
Sbjct: 450 AHKKERQTSSVQMNSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKDEDFLQPRRSITL 509
Query: 548 KKFSPKKLFYIKKKKENL-------------ASSHYVNVEEIDNSKITEQMTSVFDRIKP 607
+F P+ +++ E + ++Y + EE+DNS +Q TSVFDRIKP
Sbjct: 510 AEFLPRS--FLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDRIKP 569
Query: 608 SATRLSVFQRMSMTTAKEESQCVTYIPIRSSVFQRLSISTSKKNQYLKSIFDRLEVSNDQ 623
TR SVFQR+SM T KEE++C T R+S F+RLSISTSKK++ +FDRL+++NDQ
Sbjct: 570 LTTRSSVFQRLSMATKKEENKCPTSTYTRTSAFKRLSISTSKKHRPSTFVFDRLKMTNDQ 629
BLAST of Moc11g13730 vs. ExPASy TrEMBL
Match:
A0A5D3BX77 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00570 PE=4 SV=1)
HSP 1 Score: 398.3 bits (1022), Expect = 6.2e-107
Identity = 294/790 (37.22%), Postives = 397/790 (50.25%), Query Frame = 0
Query: 59 SYGCSDEFQLREHQTSPVVANKVMMLQETSIENEFLVNHNPLFDLN-------------P 118
++ CS E Q E VA + + ++ NP D + P
Sbjct: 20 THSCSREIQSFEDMPPFEVAKNIWEQISKPPKGGIVIKENPAVDEHNSLSECSNEEVPQP 79
Query: 119 DIVSVMMTHASTMDEKMAEMEKKLATLMKTVEERDYEIASLKNQIENRDLAESSQILAIK 178
+I+SVM+T+ T + +MAE+EKK+ LMK VEERDYEIA LKN IE+RD AESS +K
Sbjct: 80 NIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVK 139
Query: 179 INDKGQTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRIND 238
DKG+ + QE+Q Q STSIASLSVQQLQ+MI ++I+ QY G +Q+ LYSKPYTKRI++
Sbjct: 140 NTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDN 199
Query: 239 LRMPVGYQPPKFQHFDGKDNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTD 298
LRMP GYQPPKFQ FDGK NPKQH+AHF+ETCE AGTRGD LVKQFVRTLKGNAFD Y D
Sbjct: 200 LRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDLYMD 259
Query: 299 LEPETIKSWEQLER---------------------------------------------- 358
LEPE+I +WEQLER
Sbjct: 260 LEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYINRWRALSLDCKDR 319
Query: 359 ---------------W-------------------------------------------- 418
W
Sbjct: 320 LTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIPNRGAKDFLIPKSRSD 379
Query: 419 ------------------------------------------------LSLKERQENVYP 478
+LKERQE VYP
Sbjct: 380 KNELNDTKKIANSVIKESMVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYP 439
Query: 479 FPDSDIPYMLEQLLKTRLIVLPECIRPEE------------------------------- 538
F DSD+ MLEQLL+ +LI LP+C RP++
Sbjct: 440 FSDSDVADMLEQLLENQLIQLPKCKRPKQAEKVDDPNYCKYHRVISHPVEKCFVLKELIL 499
Query: 539 -MAREGKIELDFNEIAQSNHDAV--TTNIGSQTPQSLFYNKGIDLIQFGT-----LKPIS 598
+ARE KIEL+ +E+AQ+NH A+ T+N+ P + ++ LIQFGT + ++
Sbjct: 500 KLAREKKIELNIDEVAQTNHVAIEMTSNV---PPLTQLDDQRKSLIQFGTSILFQQRIVT 559
Query: 599 VRSQWKTSRNVIKDVVKSVDQGEENWATVTRQKKQKQSFAQKKSSMLSK------EHEHQ 623
+ SQ K + KD +E W TVTRQK ++ + QK+S K H+ +
Sbjct: 560 INSQNKEAHG--KD-------DDEGWITVTRQKGRQPNSIQKESQFHQKYAKGSISHKKK 619
BLAST of Moc11g13730 vs. ExPASy TrEMBL
Match:
A0A5A7TGM1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00260 PE=4 SV=1)
HSP 1 Score: 393.7 bits (1010), Expect = 1.5e-105
Identity = 265/609 (43.51%), Postives = 348/609 (57.14%), Query Frame = 0
Query: 171 QTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRMP 230
+ + QENQ Q S S+ASLSVQQLQDMI N+IRAQY G Q+S +YSK YTKRI++LRMP
Sbjct: 8 KNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQTSFMYSKSYTKRIDNLRMP 67
Query: 231 VGYQPPKFQHFDGKDNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLEPE 290
+GYQPPKFQ FDGK NPKQHIAHFVETCENAG+RGDQLV+QFVR+LKGNAF+WYTDLEPE
Sbjct: 68 LGYQPPKFQQFDGKGNPKQHIAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPE 127
Query: 291 TIK--SWEQL-------------------------------------------------- 350
IK ++E+L
Sbjct: 128 GIKPRTFEELATRAHDMELSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQE 187
Query: 351 ----------------------ERWLSLKERQENVYPFPDSDIPYMLEQLLKTRLIVLPE 410
+R +L+ERQ+ VYPFPDSD+ MLEQL++ +LI LP+
Sbjct: 188 TPLKSFSKRKERKHERNHNGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQLIQLPK 247
Query: 411 CIRPEE--------------------------------MAREGKIELDFNEIAQSNHDAV 470
C RPE+ + RE KIELD +E+AQ+NH AV
Sbjct: 248 CKRPEQAGKVDDPNYCKYHRVISHHVEKCFVLKELILKLTRENKIELDIDEVAQTNHVAV 307
Query: 471 TTNIGSQTPQS-LFYNKGIDLIQFGTLKPISVRSQWKTSRNVIKDVVKSVDQGEENWATV 530
N+ S P S L Y++ LIQFGT +PI VR Q K + ++ + ++ E W V
Sbjct: 308 --NMTSSVPPSILLYDQRESLIQFGTFEPILVRFQQKVMTSNSQNKEEPIEDEGEEWIVV 367
Query: 531 TRQKKQKQSFAQKKSSMLSK------EHEHQGKKDSR--KPKSERKENKDSFRPQISATL 590
+K+++ S Q S K H+ +G+++ + K K + +++D +P+ S TL
Sbjct: 368 AHKKERQTSSVQTNSHFHQKHSKGNISHKKKGRRNKKMWKSKPIKGKDEDFLQPRQSITL 427
Query: 591 KKFSPKKLFYIKKKKENLA------------SSHYVNVEEIDNSKITEQMTSVFDRIKPS 650
+F P+ F KE L ++Y + EE+DNS +Q TSVFDRIKP
Sbjct: 428 AEFFPRS-FLEDHPKEILEVTACHTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDRIKPL 487
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0065303.1 | 8.1e-117 | 43.48 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0033746.1 | 8.3e-114 | 39.53 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0056218.1 | 5.2e-108 | 43.53 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK03695.1 | 1.3e-106 | 37.22 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0040811.1 | 3.2e-105 | 43.51 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VAV4 | 3.9e-117 | 43.48 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5A7SUW1 | 4.0e-114 | 39.53 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5A7UM99 | 2.5e-108 | 43.53 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3BX77 | 6.2e-107 | 37.22 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7TGM1 | 1.5e-105 | 43.51 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
Match Name | E-value | Identity | Description | |