Moc11g13620 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g13620
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RNase H domain-containing protein
Location	chr11: 10067445 .. 10068042 (+)
RNA-Seq Expression	Moc11g13620
Synteny	Moc11g13620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAGAGGCATCAACTTCTACCAGCTCTCAGTAAAAGGAACAATGGAAATCAATTTGGAATCTATCTATCTCTTCCAAGATAAAACTTTTTCTATGGAAAGTTGTCTGTGAGTATCTCCCAACAACGTACAATCTTAATAAAAGAGGTATAGCAGTTTTACCATTTTGCCTTCTTTGTTCATCGAAGGTGGAGACCACTGGTCATGCCATGTTTTTTTGCAAATGATTTAGGGGGATATGGCTTCAATTATTTTCCTCTCTTCCTCATCTCCCGGCTGATCCACAACTTAAATTTGTTGATATATGGATGGGTATGAAGAACAATTTAAAGAATGATGAAATTGAGTTGGCAGCAGTCACCTGTTGGGCGATTTGGTCCGATCGTAACAAATTTGCTCAAGGATTCCAAATTCCTGATTTTGAAGCCAAATGTGCTTGGATTGGCTCGTTTCATCGTAGCTATCTTCTTGCAAACATGGCTGACATCCCTCAATCTGCTCAATCAACTAATTTGAATCGGACTCGTCGGAACTGGACTCCACCGCTCAGAAATCAACTAAAGCTAAACGTCGACGCTGCTTGCAGACAACCTTAG

mRNA sequence

ATGTTCAGAGGCATCAACTTCTACCAGCTCTCAGTAAAAGGAACAATGGAAATCAATTTGGAATCTATCTATCTCTTCCAAGATAAAACTTTTTCTATGGAAAGTTGTCTGGGGATATGGCTTCAATTATTTTCCTCTCTTCCTCATCTCCCGGCTGATCCACAACTTAAATTTGTTGATATATGGATGGGTATGAAGAACAATTTAAAGAATGATGAAATTGAGTTGGCAGCAGTCACCTGTTGGGCGATTTGGTCCGATCGTAACAAATTTGCTCAAGGATTCCAAATTCCTGATTTTGAAGCCAAATGTGCTTGGATTGGCTCGTTTCATCGTAGCTATCTTCTTGCAAACATGGCTGACATCCCTCAATCTGCTCAATCAACTAATTTGAATCGGACTCGTCGGAACTGGACTCCACCGCTCAGAAATCAACTAAAGCTAAACGTCGACGCTGCTTGCAGACAACCTTAG

Coding sequence (CDS)

ATGTTCAGAGGCATCAACTTCTACCAGCTCTCAGTAAAAGGAACAATGGAAATCAATTTGGAATCTATCTATCTCTTCCAAGATAAAACTTTTTCTATGGAAAGTTGTCTGGGGATATGGCTTCAATTATTTTCCTCTCTTCCTCATCTCCCGGCTGATCCACAACTTAAATTTGTTGATATATGGATGGGTATGAAGAACAATTTAAAGAATGATGAAATTGAGTTGGCAGCAGTCACCTGTTGGGCGATTTGGTCCGATCGTAACAAATTTGCTCAAGGATTCCAAATTCCTGATTTTGAAGCCAAATGTGCTTGGATTGGCTCGTTTCATCGTAGCTATCTTCTTGCAAACATGGCTGACATCCCTCAATCTGCTCAATCAACTAATTTGAATCGGACTCGTCGGAACTGGACTCCACCGCTCAGAAATCAACTAAAGCTAAACGTCGACGCTGCTTGCAGACAACCTTAG

Protein sequence

MFRGINFYQLSVKGTMEINLESIYLFQDKTFSMESCLGIWLQLFSSLPHLPADPQLKFVDIWMGMKNNLKNDEIELAAVTCWAIWSDRNKFAQGFQIPDFEAKCAWIGSFHRSYLLANMADIPQSAQSTNLNRTRRNWTPPLRNQLKLNVDAACRQP

Homology

[Close]

BLAST of Moc11g13620 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 3.1e-14
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 39   IWLQLFSSLPHLPADPQLKFVDIWMGMKNNLKNDEIELAAVTCWAIWSDRNKFAQGFQIP 98
            IW  LF  L  L A+  + F+++W  +   L+  ++ LAA+T W IW+DRN    G Q+ 
Sbjct: 1196 IWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVS 1255

Query: 99   DFEAKCAWIGSFHRSYLLANMADIPQSAQSTNLNRTRRNWTPPLRNQLKLNVDAACR 156
              E KC W+  F  S+  A M++     QS N     + W P     LKLN DAACR
Sbjct: 1256 PVEFKCEWLTPFLDSHSQAQMSNYSPRTQS-NHRPVVQYWRPSSSVSLKLNTDAACR 1311

[Close]

BLAST of Moc11g13620 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 84.7 bits (208), Expect = 7.6e-13
Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 39  IWLQLFSSLPHLPADPQLKFVDIWMGMKNNLKNDEIELAAVTCWAIWSDRNKFAQGFQIP 98
           IW  +F SL   P +  L F+DIW+ + + L   + +LAA T WAIW DRN  A G  + 
Sbjct: 17  IWNLMFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVS 76

Query: 99  DFEAKCAWIGSFHRSYLLANMADIPQSAQSTNLNRTRRNWTPPLRNQLKLNVDAACR 156
               +C WI S+ ++Y  A   +   S Q +++      W PP  + +K+N DAACR
Sbjct: 77  TPALRCNWISSYFQNYSQA-QENKRISPQQSSVPPPSCRWLPPRDSAMKVNSDAACR 132

[Close]

BLAST of Moc11g13620 vs. NCBI nr
Match: XP_022141766.1 (uncharacterized protein LOC111012047 [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-07
Identity = 34/110 (30.91%), Postives = 50/110 (45.45%), Query Frame = 0


Query: 50  LPADPQLKFVDIWMGMKNNLKNDEIELAAVTCWAIWSDRNKFAQGFQIPDFEAKCAWIGS 109
           L  D    F+D W   + NL  +E+ LA + CWA W+DRN+   G  + D   +  WI +
Sbjct: 4   LGVDCNCSFIDRWALWRENLTLEELLLAGIICWANWNDRNQRNNGIDVADVHTESDWITN 63

Query: 110 FHRSYLLANMADIPQSAQSTNLNRTRRN------WTPPLRNQLKLNVDAA 154
           +    L           +    N  ++N      W PP +  +KLNVDAA
Sbjct: 64  YAMELL----------TRRRKTNEAQKNLPCLAIWKPPSKGTVKLNVDAA 103

[Close]

BLAST of Moc11g13620 vs. NCBI nr
Match: KAF4375727.1 (hypothetical protein F8388_014449 [Cannabis sativa])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-06
Identity = 35/114 (30.70%), Postives = 56/114 (49.12%), Query Frame = 0


Query: 50   LPADPQLKFVDIWMGMKNNLKNDEIELAAVTCWAIWSDRNKFAQGFQIPDFEAKCAWIGS 109
            +P    LK  DI+  +    K+D++++     W IWS+RNK   G +    E  C++  S
Sbjct: 1036 MPNIGNLKGYDIFSYLATVNKDDDLKMIICIMWCIWSERNKEIHGSKSKIVEVICSYSDS 1095

Query: 110  FHRSYLLANMADIP----------QSAQSTNLNRTRRNWTPPLRNQLKLNVDAA 154
            +   Y  A +A IP          Q + S++  +T   W PP ++  KLN+DAA
Sbjct: 1096 YLAQYHRATVAAIPSQTPAAINCNQQSASSSFKQTISKWQPPGKDMYKLNIDAA 1149

[Close]

BLAST of Moc11g13620 vs. NCBI nr
Match: XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-06
Identity = 30/93 (32.26%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 68  NLKNDEIELAAVTCWAIWSDRNKFAQGFQIPDFEAKCAWIGSFHRSYLLANMADIP---- 127
           +L   + +L  V  WAIW+DRN      QIPD + +  WI ++ R + + ++  +     
Sbjct: 79  SLSTPDFDLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRI 138

Query: 128 QSAQSTNLNRTRRNWTPPLRNQLKLNVDAACRQ 157
           Q   S+N       W+PP    +K+NVDAAC++
Sbjct: 139 QEDASSNDRTIENYWSPPPAGWIKINVDAACKK 171

[Close]

BLAST of Moc11g13620 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.5e-14
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 39   IWLQLFSSLPHLPADPQLKFVDIWMGMKNNLKNDEIELAAVTCWAIWSDRNKFAQGFQIP 98
            IW  LF  L  L A+  + F+++W  +   L+  ++ LAA+T W IW+DRN    G Q+ 
Sbjct: 1196 IWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVS 1255

Query: 99   DFEAKCAWIGSFHRSYLLANMADIPQSAQSTNLNRTRRNWTPPLRNQLKLNVDAACR 156
              E KC W+  F  S+  A M++     QS N     + W P     LKLN DAACR
Sbjct: 1256 PVEFKCEWLTPFLDSHSQAQMSNYSPRTQS-NHRPVVQYWRPSSSVSLKLNTDAACR 1311

[Close]

BLAST of Moc11g13620 vs. ExPASy TrEMBL
Match: A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.7e-13
Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 39  IWLQLFSSLPHLPADPQLKFVDIWMGMKNNLKNDEIELAAVTCWAIWSDRNKFAQGFQIP 98
           IW  +F SL   P +  L F+DIW+ + + L   + +LAA T WAIW DRN  A G  + 
Sbjct: 17  IWNLMFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVS 76

Query: 99  DFEAKCAWIGSFHRSYLLANMADIPQSAQSTNLNRTRRNWTPPLRNQLKLNVDAACR 156
               +C WI S+ ++Y  A   +   S Q +++      W PP  + +K+N DAACR
Sbjct: 77  TPALRCNWISSYFQNYSQA-QENKRISPQQSSVPPPSCRWLPPRDSAMKVNSDAACR 132

[Close]

BLAST of Moc11g13620 vs. ExPASy TrEMBL
Match: A0A6J1CK80 (uncharacterized protein LOC111012047 OS=Momordica charantia OX=3673 GN=LOC111012047 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-07
Identity = 34/110 (30.91%), Postives = 50/110 (45.45%), Query Frame = 0


Query: 50  LPADPQLKFVDIWMGMKNNLKNDEIELAAVTCWAIWSDRNKFAQGFQIPDFEAKCAWIGS 109
           L  D    F+D W   + NL  +E+ LA + CWA W+DRN+   G  + D   +  WI +
Sbjct: 4   LGVDCNCSFIDRWALWRENLTLEELLLAGIICWANWNDRNQRNNGIDVADVHTESDWITN 63

Query: 110 FHRSYLLANMADIPQSAQSTNLNRTRRN------WTPPLRNQLKLNVDAA 154
           +    L           +    N  ++N      W PP +  +KLNVDAA
Sbjct: 64  YAMELL----------TRRRKTNEAQKNLPCLAIWKPPSKGTVKLNVDAA 103

[Close]

BLAST of Moc11g13620 vs. ExPASy TrEMBL
Match: A0A7J6FYS0 (Alpha-aminoacylpeptide hydrolase OS=Cannabis sativa OX=3483 GN=F8388_014449 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-07
Identity = 35/114 (30.70%), Postives = 56/114 (49.12%), Query Frame = 0


Query: 50   LPADPQLKFVDIWMGMKNNLKNDEIELAAVTCWAIWSDRNKFAQGFQIPDFEAKCAWIGS 109
            +P    LK  DI+  +    K+D++++     W IWS+RNK   G +    E  C++  S
Sbjct: 1036 MPNIGNLKGYDIFSYLATVNKDDDLKMIICIMWCIWSERNKEIHGSKSKIVEVICSYSDS 1095

Query: 110  FHRSYLLANMADIP----------QSAQSTNLNRTRRNWTPPLRNQLKLNVDAA 154
            +   Y  A +A IP          Q + S++  +T   W PP ++  KLN+DAA
Sbjct: 1096 YLAQYHRATVAAIPSQTPAAINCNQQSASSSFKQTISKWQPPGKDMYKLNIDAA 1149

[Close]

BLAST of Moc11g13620 vs. ExPASy TrEMBL
Match: A0A6J1CTE3 (uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014578 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.8e-07
Identity = 30/93 (32.26%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 68  NLKNDEIELAAVTCWAIWSDRNKFAQGFQIPDFEAKCAWIGSFHRSYLLANMADIP---- 127
           +L   + +L  V  WAIW+DRN      QIPD + +  WI ++ R + + ++  +     
Sbjct: 79  SLSTPDFDLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRI 138

Query: 128 QSAQSTNLNRTRRNWTPPLRNQLKLNVDAACRQ 157
           Q   S+N       W+PP    +K+NVDAAC++
Sbjct: 139 QEDASSNDRTIENYWSPPPAGWIKINVDAACKK 171

The following BLAST results are available for this feature:

BLAST of Moc11g13620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158377.1	3.1e-14	37.61	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_022131661.1	7.6e-13	36.75	uncharacterized protein LOC111004786 [Momordica charantia]	[more]
XP_022141766.1	4.8e-07	30.91	uncharacterized protein LOC111012047 [Momordica charantia]	[more]
KAF4375727.1	1.4e-06	30.70	hypothetical protein F8388_014449 [Cannabis sativa]	[more]
XP_022145060.1	1.8e-06	32.26	uncharacterized protein LOC111014578 [Momordica charantia]	[more]

BLAST of Moc11g13620 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g13620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	1.5e-14	37.61	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1BQ49	3.7e-13	36.75	uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A6J1CK80	2.3e-07	30.91	uncharacterized protein LOC111012047 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A7J6FYS0	6.7e-07	30.70	Alpha-aminoacylpeptide hydrolase OS=Cannabis sativa OX=3483 GN=F8388_014449 PE=3...	[more]
A0A6J1CTE3	8.8e-07	32.26	uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of Moc11g13620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g13620.1	Moc11g13620.1	mRNA