Moc11g13490 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g13490
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr11: 9937198 .. 9937748 (+)
RNA-Seq Expression	Moc11g13490
Synteny	Moc11g13490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACGACAAGCTCCTCGCCGATTGGCAAAAGCTCAAGTTGACATTTGAGGAGGAGGAGTTAGCGATTGTTGTGGACTCTGAAGCTATCAAGATGACTGAACAAGGTTTGAATTCTAGTTTGGTTGGTAAGCTTCTTGTTAAAAGGATCATCAGTTCTGAAGTGTTAACAAAGGTTCTCTTTGATCAGGAAAGTAGAGAACAAATTAACTGCGGAGAATATTGGAAAAAAATCTTTTTTTATTCAACTTTTGCAGAGAAGTTGATATGGTTAGAGTGTTGAAAACAGGACCGTGGTTTTTTGATAAGGCTCTTCTTGTCCTTGAAAAGCCTTGCCATTCAAAAAAAAAATTTCGGAATTGGAGTTTAAAAAGGTTCTGGGTCCATTTTTTTGGTCTTCCAATGTCATGTATGAACAGGACTATGGCTATTCGTCTTGGAAATGCAATCGGAAGGTTTGAGGATGTTGACTGCAATGGAAATGGTTTCTGCTGGGGTGCTAGTCTTCGGATTAGGGTCTCTGTTGACATAAAACAAACCTTTGCGTAG

mRNA sequence

ATGGAAAACGACAAGCTCCTCGCCGATTGGCAAAAGCTCAAGTTGACATTTGAGGAGGAGGAGTTAGCGATTGTTGTGGACTCTGAAGCTATCAAGATGACTGAACAAGGTTTGAATTCTAGTTTGGTTGGTAAGCTTCTTGTTAAAAGGATCATCAGTTCTGAAGTGTTAACAAAGGTTCTCTTTGATCAGGAAAGTAGAGAACAAATTAACTGCGGAGAATATTGGAAAAAAATCTTTTTTTATTCAACTTTTGCAGAGAAGTTGATATGGACTATGGCTATTCGTCTTGGAAATGCAATCGGAAGGTTTGAGGATGTTGACTGCAATGGAAATGGTTTCTGCTGGGGTGCTAGTCTTCGGATTAGGGTCTCTGTTGACATAAAACAAACCTTTGCGTAG

Coding sequence (CDS)

ATGGAAAACGACAAGCTCCTCGCCGATTGGCAAAAGCTCAAGTTGACATTTGAGGAGGAGGAGTTAGCGATTGTTGTGGACTCTGAAGCTATCAAGATGACTGAACAAGGTTTGAATTCTAGTTTGGTTGGTAAGCTTCTTGTTAAAAGGATCATCAGTTCTGAAGTGTTAACAAAGGTTCTCTTTGATCAGGAAAGTAGAGAACAAATTAACTGCGGAGAATATTGGAAAAAAATCTTTTTTTATTCAACTTTTGCAGAGAAGTTGATATGGACTATGGCTATTCGTCTTGGAAATGCAATCGGAAGGTTTGAGGATGTTGACTGCAATGGAAATGGTTTCTGCTGGGGTGCTAGTCTTCGGATTAGGGTCTCTGTTGACATAAAACAAACCTTTGCGTAG

Protein sequence

MENDKLLADWQKLKLTFEEEELAIVVDSEAIKMTEQGLNSSLVGKLLVKRIISSEVLTKVLFDQESREQINCGEYWKKIFFYSTFAEKLIWTMAIRLGNAIGRFEDVDCNGNGFCWGASLRIRVSVDIKQTFA

Homology

[Close]

BLAST of Moc11g13490 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 78/179 (43.58%), Postives = 98/179 (54.75%), Query Frame = 0


Query: 1   MENDKLLADWQKLKLTFEEEELAIVVDSEAIKMTEQGLNSSLVGKLLVKRIISSEVLTKV 60
           M+++ LLADWQK KLT EE+E+A+ VD +A+KM EQGL  SLVGKLL KRIIS++VL++V
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 61  L----------------------------------------FDQE--------SREQINC 120
           L                                        FD+         S + I+ 
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120

Query: 121 GEYWKKIFFYSTFAEKLIW---TMAIRLGNAIGRFEDVDCNGNGFCWGASLRIRVSVDI 129
            E+ +  F+   F   + W   TMAIRLGNAIG F DVDCN  GF WGASLRIRV +DI
Sbjct: 121 LEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDI 179

[Close]

BLAST of Moc11g13490 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-10
Identity = 59/183 (32.24%), Postives = 81/183 (44.26%), Query Frame = 0


Query: 1   MENDKLLADWQKLKLTFEEEELAIVVDSEAIKMTEQGLNSSLVGKLLVKRIISSEVLTKV 60
           M    LL +W+  KLT EE+++A+ +DS A++ T + L  SL+ KLL KR IS  VL   
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  LFDQESREQINCGEYWKKIFFYS---------------------TFAEKLI--------- 120
           L   +   +++C  +   I  ++                     TF   LI         
Sbjct: 61  L---KIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLT 120

Query: 121 ------------W-------------TMAIRLGNAIGRFEDVDCNGNGFCWGASLRIRVS 129
                       W             TMA RLGNAIG FEDV+ N N FCWG+ LR+RV 
Sbjct: 121 KPLDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVR 180

[Close]

BLAST of Moc11g13490 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 56/177 (31.64%), Postives = 76/177 (42.94%), Query Frame = 0


Query: 6   LLADWQKLKLTFEEEELAIVVDSEAIKMTEQGLNSSLVGKLLVKRIISSEVLTKVL---- 65
           LL +W+  KLT EEEE AI VD+ A   T   L   LVGKL +KR I+  V+   +    
Sbjct: 6   LLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTAW 65

Query: 66  ------FDQES---------------REQINCGEYW----------KKIFFYS----TFA 125
                 F+ +S               R +I     W          K +         F 
Sbjct: 66  KLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPSELDFT 125

Query: 126 EKLIWT-------------MAIRLGNAIGRFEDVDCNGNGFCWGASLRIRVSVDIKQ 131
           +  IW              MAIRLGNA+G FE+ DC+     WG++LR+RV +DI +
Sbjct: 126 KLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISK 182

[Close]

BLAST of Moc11g13490 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.1e-24
Identity = 78/179 (43.58%), Postives = 98/179 (54.75%), Query Frame = 0


Query: 1   MENDKLLADWQKLKLTFEEEELAIVVDSEAIKMTEQGLNSSLVGKLLVKRIISSEVLTKV 60
           M+++ LLADWQK KLT EE+E+A+ VD +A+KM EQGL  SLVGKLL KRIIS++VL++V
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 61  L----------------------------------------FDQE--------SREQINC 120
           L                                        FD+         S + I+ 
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120

Query: 121 GEYWKKIFFYSTFAEKLIW---TMAIRLGNAIGRFEDVDCNGNGFCWGASLRIRVSVDI 129
            E+ +  F+   F   + W   TMAIRLGNAIG F DVDCN  GF WGASLRIRV +DI
Sbjct: 121 LEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDI 179

[Close]

BLAST of Moc11g13490 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.5e-11
Identity = 59/183 (32.24%), Postives = 81/183 (44.26%), Query Frame = 0


Query: 1   MENDKLLADWQKLKLTFEEEELAIVVDSEAIKMTEQGLNSSLVGKLLVKRIISSEVLTKV 60
           M    LL +W+  KLT EE+++A+ +DS A++ T + L  SL+ KLL KR IS  VL   
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  LFDQESREQINCGEYWKKIFFYS---------------------TFAEKLI--------- 120
           L   +   +++C  +   I  ++                     TF   LI         
Sbjct: 61  L---KIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLT 120

Query: 121 ------------W-------------TMAIRLGNAIGRFEDVDCNGNGFCWGASLRIRVS 129
                       W             TMA RLGNAIG FEDV+ N N FCWG+ LR+RV 
Sbjct: 121 KPLDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVR 180

[Close]

BLAST of Moc11g13490 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.8e-08
Identity = 56/177 (31.64%), Postives = 76/177 (42.94%), Query Frame = 0


Query: 6   LLADWQKLKLTFEEEELAIVVDSEAIKMTEQGLNSSLVGKLLVKRIISSEVLTKVL---- 65
           LL +W+  KLT EEEE AI VD+ A   T   L   LVGKL +KR I+  V+   +    
Sbjct: 6   LLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTAW 65

Query: 66  ------FDQES---------------REQINCGEYW----------KKIFFYS----TFA 125
                 F+ +S               R +I     W          K +         F 
Sbjct: 66  KLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPSELDFT 125

Query: 126 EKLIWT-------------MAIRLGNAIGRFEDVDCNGNGFCWGASLRIRVSVDIKQ 131
           +  IW              MAIRLGNA+G FE+ DC+     WG++LR+RV +DI +
Sbjct: 126 KLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISK 182

The following BLAST results are available for this feature:

BLAST of Moc11g13490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156185.1	1.1e-23	43.58	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_022132681.1	1.3e-10	32.24	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
XP_022158377.1	1.8e-07	31.64	uncharacterized protein LOC111024874 [Momordica charantia]	[more]

BLAST of Moc11g13490 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g13490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU55	5.1e-24	43.58	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1BSZ1	6.5e-11	32.24	uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1DX30	8.8e-08	31.64	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Moc11g13490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g13490.1	Moc11g13490.1	mRNA