Moc11g13470 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g13470
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	small RNA degrading nuclease 5
Location	chr11: 9916435 .. 9920567 (+)
RNA-Seq Expression	Moc11g13470
Synteny	Moc11g13470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTGAAGATTTGGAGCACTTGTTATGGAGTTGTCAGTTCGCTCAGGATATTTGGCTCCGTTTCTTTGATTGCTTTGGCTTGTCTTAGGTCCGTTCCAGAGGGGTGATGGAGGAGGTGTTGTTACACCTCCCTTTTCATGACAGGGGTCGTTTTTTGTGGCAGACCTGTTTTCTGGCTGCTATTTGGAGGATTTGGTTAGAGAGAAATAATAGGATGTTTAGGGAGGTGGAGAAATCTGTGGATTATGTTTGGGATCTCATTAGATTTAATACTTCTTTATGGGGCTCTGTTTCTAAGGCCTTTTGTAATTATCTGTTAGGTCTCATTCTTTTGGATTGGAGTCCGTTTCTGTAAGGGACTCCTCTCGGGGTTGGTTTTTTTGTAGGCCCCTTTGGTTTCTTTTGTTTCTCTTTTCATTCTTCTCAATGAAAGTATCGTTTCTTATGAAAAAAAAAATTTGTGCTTGTAAAATCTTGGTTATAGTTCTTTTTGGGAGACCTATAGAGGTGCCACCCATCACAATTTTGCCTTCTCATTGAGCTTTTATTGAGGGTTACCAAATTGTAGATCCTATTCTGGGGCAAACAAGGTGGTGCATGAATGGAGGTGCAAAAAGAATAAAGGTGTTGTCTTCAAACTTAAAACTGAAAAAACCTATCAGAAGGTGGACGGAAACTTCCTTCATAAGATCCTTCAAGTTAAAAAGAATTTCTTTGTAGTTTCTTGGGAATCATTTTATTTTTGTTATTTGTGCCAATTGGAGTGCTTTTGTTTAAGCTCCTAAGCATGTAGGATCTCTTGTCCTTCCTTTGGTATTATCTCATTATTAATGAGAGCTGCTTCTTATAAACGAGTGTATTTCAAGTATTTCCTTCCTATTTTGTTCTTATCATTGGGTAGTCTAGAAGCAAAATACAAACACTGGGACCTTAGACTAGGGACCCCTTCTCCATTTTTCATTTCCTCCTTGTCAGTCTGTTTGAGTAGACTTCTTTGAAAGGGAGTTGAGATTGAGATTATTGAAGGCTCCCTTGTAGAAGAAAAAGAGTCATCTGCCACTTGCAATTTGTTGAACACACTCTTTTGAATCATGGAAGACGGAAAAATAGTTAATCTATTTGACATGGTTAAAACTTTTGAGTTGGCATTTGGTTGGAAAATCAGTTTAACTACATTTTCAGTGATTTGCATCAACATTGGTGAATTGGATCTTGGCAAAGCTGTTAAAACTTGGGGCTGCTTGAAGGGCTCCTTTCCTCTTACTTATTTGGGCATGCCCCTCGGCAATAAACCCAAGTCCTTGGTCAGTGGTCTTCTGGAATCCTTTGGTGGAGAAAGTTGAACAAAAGGGGTTGCCTTACTTCGATTGTCCTTGCCAACCTTCTTACTTTCTCTCGGCTTTCCAAGCCCCAAAGACTATTCTGTATAAAACTTACAAGTGTATCAGAAAAGTCTTTTTACAAGGCGCCTAATTTGGACGGAGAGTGTCCTCTGATACAAGGGAATTTTGTTTCTCTTCCTTTGGTGCTTGTTGGCCTCGATGTTGGGAAAATGAGAAATAAATGGAACCCTTCTTACCAATTGGCTTTGGCGTATTCTCAAATGAGCTTGCCTCTCTTGTGACATATAATTTGAGAAAATGCGATAAAGTTGGTATGAGTGACTAGCCAAGAGTTTAAATACAGTGGCTATAAAAGCCCCTTGGATGAGAATCACCAGAACAGAAAGCTCCTTCAAGCATTGCATTAGTATGAAGGCTTTATATAGTGAAAGCTGGACCTTTTAAAATTAAAGCTGTTTTACACTCAAAACTCTTATTATATTCTTATGTTATAACTGTTGTTGTTATCATTCCTTTGGGATTGATAGTGGGAAAATTACTCCAGCGCAGTCTTGATCAGTTGCATATATCTTTTGCATTGTAGAGTTTGGCTTAAAGATTACCTTATGTTGTGTTATAAATTGTCAAGTTTAATTTCTGCAGAGTTATTATTGGATGCCTTTTCTCTTGTTTTCAATCAGGACCGGAGTTTGGTTCGCCTCCATCATTAATCCGGAAAAAACTACTAACTATACTTGGTGAGAGTGGAAAGACGTCTTCTTTCATTGATGATGTTTCAACAGTGAAGCGATATTCCTCTGAATCATCACATGCATTTCCTGTAACTTCTGATGAGGAAGCTCTTTCAAGGGCAAAAAAGGAGGTTGATTGGCTGCTGATTGTACCTTTCAGAAATTTCTTTTTATAGCTGACTGATATCTGATAGTATTTTTTGTGCCTGTTATTGTTCTAGGTAATAAATGAAAAAGTGCACTTCATCTGGACACAATTTTCGGAACTGAATTCTTACTATAAGAAACAAGCAGATGATGAAGAAAGATTGAATGTCAAACTTGCTGAGATGATGTCTTTACTTACATGTGATACGAAATCTGTCAACCGAAAAAAGCACAGCCGCAAGATCTCTCCTGAACTTCGGGAAATTCTGACTCGCATGGATTCCAGAATCAAAAACCTCTACAGCTCATTACCTACTAATGCAATGCTTATTATTTGCACTGGTCATGGTGACATAGCACTTGTACAGAGGTATGTGCATGATGCAACCTAAAATCTGTTCTTTGCATTTATCATGGTAAATTTGAACTGCTTACAAACATTGAAGTTTCCATTCGATAGAACAAGTGACATAATGTGACATAGAATCTAGCAATTATTCAATCATATCATGAAAGGTTACAGGGCAAGCACTTTCTGCCTGGTGCCTCGGAAGTGTTCATGTGGGAAATACTATCATAAGGAAAAAACTTGTTAGATGAGCTAAATGTACCTTATGGCTCCAAATTGCGATGAAGAAAAACTCCTTAGTCTGGCTAATAGGATTGGCTTTTCTGTTATGACCTTCCTTTATGTTATATTATTAGCCTTCCTTTACACCATAACCCTAGGTCTGACTAGCAAAAGGGCAGTGCAAGAATATGTGATCTGGGTCTCAACCTTTAAACAAAGGCTACAAACCGAGAGGGAGAGCCCACTTGGGGGTATCTTCCAACCTTTGAAGTCTTTCTGTCGCGTTAATACTTCTATAATAGAGAACTATCATGAGTTGGGCTAGTGGTCAATAAGGGCCAATGTAAATAGTAAAGGTCTTAAATGGAATGAGTTCAGACTATGGTTGCCACTTATCTAGGAATTTAATATCCTACGAGTTTTCTTAACAACCAAATATAGTTGGGTCAGGCGGTTGTCCGTGATTAGTTGAGGTATGCACAAGTTGGCCTGAGAGTGGGACACAATATAAAAGAAATACTTCTACAGCAGAGAGTTAATTGGAGGATTCTTAATTAGGTCATTACATAAAAAACTTGTTAACAAAAAGTTGGTGTGATTATTCTTTCAACATATTTGGACATGTCATTTGGATGCTACCTAACACATGAAATCTAGCTTGCCCATTAGAAAAATCTGACCTGGGTTTCAACAAAATCTATTTATTCCGAGTGCACGTAAATATGTTAGAAAAACCAATAATTTAGTGACAAGTTTTTTAGTTGATTTTTTTCCCCTAAAAGGAGCTAATTGTGAATTTCCATACGGGTAAATTTGAGACTTGTAAAATATTAAACACCATTTGATAATATTTAGTCTTACCTTTTCGTGTGGGAGTGGGGGTAAAATTAAAGGTATAGTTAAGATGTTCTTACTAGGTATGAATACCTTTTTCTTTTTCCTCTGTGGTTGTGAGTGTTTGGACTCACTTACCACACACACATCGACTAATATTTTGGGATAATCCATATGATGTTTTAGTATTTGGTTGTTAAAACTTTTGTAGGATGTAATAACCTAGATAGACGACTACCATAGGATTCGAAACTATTTTCCAACCATTTCTATTCTCACCAAAATTTCTGCACTATTCATAGACTTTATTGGCAGTCTTTATTATTACTTGTTCTTTTTGTTGGTTTGGAACATTACCACACGTTGTATATGGATGTAGATTGAGGAGAATGCTAAAGGAGCAAAATGAAACAAGCATATGCCGTGAGAAGATTGTAAAGATATTGGAAGAGCTCCATGCCCAAGCTGAGGTAGCTCTGTGTTTTGTATCTGTAAAACATTGA

mRNA sequence

ATGCCTCTGAAGATTTGGAGCACTTGTTATGGAGTTGTCAGTTCGCTCAGGATATTTGGCTCCGTTTCTTTGATTGCTTTGGCTTGTCTTAGGTCTCATTCTTTTGGATTGGAGTCCGTTTCTGTAAGGGACTCCTCTCGGGTGATTTGCATCAACATTGGTGAATTGGATCTTGGCAAAGCTGTTAAAACTTGGGGCTGCTTGAAGGGCTCCTTTCCTCTTACTTATTTGGGCATGCCCCTCGGCAATAAACCCAAGTCCTTGGTCAGTGGTCTTCTGGAATCCTTTGGTGGAGAAAGACCGGAGTTTGGTTCGCCTCCATCATTAATCCGGAAAAAACTACTAACTATACTTGGTGAGAGTGGAAAGACGTCTTCTTTCATTGATGATGTTTCAACAGTGAAGCGATATTCCTCTGAATCATCACATGCATTTCCTGTAACTTCTGATGAGGAAGCTCTTTCAAGGGCAAAAAAGGAGGTAATAAATGAAAAAGTGCACTTCATCTGGACACAATTTTCGGAACTGAATTCTTACTATAAGAAACAAGCAGATGATGAAGAAAGATTGAATGTCAAACTTGCTGAGATGATGTCTTTACTTACATGTGATACGAAATCTGTCAACCGAAAAAAGCACAGCCGCAAGATCTCTCCTGAACTTCGGGAAATTCTGACTCGCATGGATTCCAGAATCAAAAACCTCTACAGCTCATTACCTACTAATGCAATGCTTATTATTTGCACTGGTCATGGTGACATAGCACTTGTACAGAGATTGAGGAGAATGCTAAAGGAGCAAAATGAAACAAGCATATGCCGTGAGAAGATTGTAAAGATATTGGAAGAGCTCCATGCCCAAGCTGAGGTAGCTCTGTGTTTTGTATCTGTAAAACATTGA

Coding sequence (CDS)

ATGCCTCTGAAGATTTGGAGCACTTGTTATGGAGTTGTCAGTTCGCTCAGGATATTTGGCTCCGTTTCTTTGATTGCTTTGGCTTGTCTTAGGTCTCATTCTTTTGGATTGGAGTCCGTTTCTGTAAGGGACTCCTCTCGGGTGATTTGCATCAACATTGGTGAATTGGATCTTGGCAAAGCTGTTAAAACTTGGGGCTGCTTGAAGGGCTCCTTTCCTCTTACTTATTTGGGCATGCCCCTCGGCAATAAACCCAAGTCCTTGGTCAGTGGTCTTCTGGAATCCTTTGGTGGAGAAAGACCGGAGTTTGGTTCGCCTCCATCATTAATCCGGAAAAAACTACTAACTATACTTGGTGAGAGTGGAAAGACGTCTTCTTTCATTGATGATGTTTCAACAGTGAAGCGATATTCCTCTGAATCATCACATGCATTTCCTGTAACTTCTGATGAGGAAGCTCTTTCAAGGGCAAAAAAGGAGGTAATAAATGAAAAAGTGCACTTCATCTGGACACAATTTTCGGAACTGAATTCTTACTATAAGAAACAAGCAGATGATGAAGAAAGATTGAATGTCAAACTTGCTGAGATGATGTCTTTACTTACATGTGATACGAAATCTGTCAACCGAAAAAAGCACAGCCGCAAGATCTCTCCTGAACTTCGGGAAATTCTGACTCGCATGGATTCCAGAATCAAAAACCTCTACAGCTCATTACCTACTAATGCAATGCTTATTATTTGCACTGGTCATGGTGACATAGCACTTGTACAGAGATTGAGGAGAATGCTAAAGGAGCAAAATGAAACAAGCATATGCCGTGAGAAGATTGTAAAGATATTGGAAGAGCTCCATGCCCAAGCTGAGGTAGCTCTGTGTTTTGTATCTGTAAAACATTGA

Protein sequence

MPLKIWSTCYGVVSSLRIFGSVSLIALACLRSHSFGLESVSVRDSSRVICINIGELDLGKAVKTWGCLKGSFPLTYLGMPLGNKPKSLVSGLLESFGGERPEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKEVINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPELREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKILEELHAQAEVALCFVSVKH

Homology

[Close]

BLAST of Moc11g13470 vs. NCBI nr
Match: XP_022153687.1 (small RNA degrading nuclease 5 [Momordica charantia])

HSP 1 Score: 384.4 bits (986), Expect = 8.8e-103
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 101 PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE 160
           PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE
Sbjct: 375 PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE 434

Query: 161 VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE 220
           VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE
Sbjct: 435 VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE 494

Query: 221 LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI 280
           LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI
Sbjct: 495 LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI 554

Query: 281 LEELHAQAEVALCFVSVKH 300
           LEELHAQAEVALCFVSVKH
Sbjct: 555 LEELHAQAEVALCFVSVKH 573

[Close]

BLAST of Moc11g13470 vs. NCBI nr
Match: XP_023525579.1 (small RNA degrading nuclease 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 349.4 bits (895), Expect = 3.2e-92
Identity = 175/199 (87.94%), Postives = 194/199 (97.49%), Query Frame = 0


Query: 101 PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE 160
           PEFGSPPSLIRKKLLTILGE+GKTSSFIDDVSTVKRYSSESSHAFPVTSD+EALSRAKKE
Sbjct: 374 PEFGSPPSLIRKKLLTILGENGKTSSFIDDVSTVKRYSSESSHAFPVTSDDEALSRAKKE 433

Query: 161 VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE 220
           V+NE+VHFIWTQFSELNSY+KKQ DDEERLNVKLAE++SLLTCD+KS N+K++SRKIS E
Sbjct: 434 VMNERVHFIWTQFSELNSYHKKQVDDEERLNVKLAELLSLLTCDSKSANKKRNSRKISVE 493

Query: 221 LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI 280
           LREIL+RMDSRIK+LY+SLPTNAMLI+CTGHGDIALVQRLR+MLKEQ+ET ICREKIVK+
Sbjct: 494 LREILSRMDSRIKDLYTSLPTNAMLIVCTGHGDIALVQRLRKMLKEQSETMICREKIVKM 553

Query: 281 LEELHAQAEVALCFVSVKH 300
           LEELHAQAEVALCF S+KH
Sbjct: 554 LEELHAQAEVALCFASIKH 572

[Close]

BLAST of Moc11g13470 vs. NCBI nr
Match: XP_022926206.1 (small RNA degrading nuclease 5-like [Cucurbita moschata])

HSP 1 Score: 349.4 bits (895), Expect = 3.2e-92
Identity = 175/199 (87.94%), Postives = 194/199 (97.49%), Query Frame = 0


Query: 101 PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE 160
           PEFGSPPSLIRKKLLT+LGE+GKTSSFIDDVSTVKRYSSESSHAFPVTSD+EALSRAKKE
Sbjct: 374 PEFGSPPSLIRKKLLTVLGENGKTSSFIDDVSTVKRYSSESSHAFPVTSDDEALSRAKKE 433

Query: 161 VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE 220
           V+NE+VHFIWTQFSELNSY+KKQ DDEERLNVKLAE++SLLTCD+KSVN+K++SRKIS E
Sbjct: 434 VMNERVHFIWTQFSELNSYHKKQVDDEERLNVKLAELLSLLTCDSKSVNKKRNSRKISVE 493

Query: 221 LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI 280
           LREIL+RMD RIK+LY+SLPTNAMLI+CTGHGDIALVQRLR+MLKEQ+ET ICREKIVKI
Sbjct: 494 LREILSRMDYRIKDLYTSLPTNAMLIVCTGHGDIALVQRLRKMLKEQSETMICREKIVKI 553

Query: 281 LEELHAQAEVALCFVSVKH 300
           LEELHAQAEVALCF S+KH
Sbjct: 554 LEELHAQAEVALCFASIKH 572

[Close]

BLAST of Moc11g13470 vs. NCBI nr
Match: XP_022981433.1 (small RNA degrading nuclease 5-like [Cucurbita maxima])

HSP 1 Score: 347.1 bits (889), Expect = 1.6e-91
Identity = 175/199 (87.94%), Postives = 194/199 (97.49%), Query Frame = 0


Query: 101 PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE 160
           PEFGSPPSLIRKKLLTILGE+GKTSSFIDDVSTVKRYSSESSHAFPVTSD+EALSRAKKE
Sbjct: 374 PEFGSPPSLIRKKLLTILGENGKTSSFIDDVSTVKRYSSESSHAFPVTSDDEALSRAKKE 433

Query: 161 VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE 220
           V+NE+VHFIWTQFSELNSY+KKQ DDEERLNVKLAE++SLLTCD+KSVN+K++SRKIS E
Sbjct: 434 VMNERVHFIWTQFSELNSYHKKQVDDEERLNVKLAELLSLLTCDSKSVNKKRNSRKISVE 493

Query: 221 LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI 280
           LREIL+RMDSRIK+LY+SLPTNAMLI+CTGHGDIALVQRLR+MLKEQ+ET I REKIVKI
Sbjct: 494 LREILSRMDSRIKDLYTSLPTNAMLIVCTGHGDIALVQRLRKMLKEQSETMISREKIVKI 553

Query: 281 LEELHAQAEVALCFVSVKH 300
           LE+LHAQAEVALCF S+KH
Sbjct: 554 LEDLHAQAEVALCFASIKH 572

[Close]

BLAST of Moc11g13470 vs. NCBI nr
Match: XP_038886453.1 (small RNA degrading nuclease 5 [Benincasa hispida])

HSP 1 Score: 342.8 bits (878), Expect = 3.0e-90
Identity = 172/199 (86.43%), Postives = 192/199 (96.48%), Query Frame = 0


Query: 101 PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE 160
           P+FGSPPSLIRKKLL ILGESGKTSSFID++STVKRYSSES+HAFPVTSD+EALSRAKKE
Sbjct: 374 PDFGSPPSLIRKKLLNILGESGKTSSFIDNISTVKRYSSESTHAFPVTSDDEALSRAKKE 433

Query: 161 VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE 220
            +NE+VHFIWTQFSELNSY+KKQADDEERLNVKLAE++SLLTCDTK+VN+K++S KIS E
Sbjct: 434 AMNERVHFIWTQFSELNSYHKKQADDEERLNVKLAELLSLLTCDTKTVNKKRNSPKISAE 493

Query: 221 LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI 280
           LREIL RMDSRI +LY+SLPTNAMLIICTGHGDIALVQRLR+ML+EQ+ETSICREKIVKI
Sbjct: 494 LREILARMDSRINDLYTSLPTNAMLIICTGHGDIALVQRLRKMLQEQSETSICREKIVKI 553

Query: 281 LEELHAQAEVALCFVSVKH 300
           LEELHAQAEVALCFV +KH
Sbjct: 554 LEELHAQAEVALCFVCIKH 572

[Close]

BLAST of Moc11g13470 vs. ExPASy Swiss-Prot
Match: Q8L7M4 (Small RNA degrading nuclease 5 OS=Arabidopsis thaliana OX=3702 GN=SDN5 PE=2 SV=2)

HSP 1 Score: 246.9 bits (629), Expect = 2.9e-64
Identity = 119/198 (60.10%), Postives = 166/198 (83.84%), Query Frame = 0


Query: 101 PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE 160
           P+FGSPP +IRKKLL +L ESGKT+S ID+++ VKRY+SESS+A PV+SD+EALS+A KE
Sbjct: 372 PDFGSPPEVIRKKLLAVLNESGKTTSIIDNINIVKRYASESSNAIPVSSDDEALSKAVKE 431

Query: 161 VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE 220
           V N++  F+WTQFSELN++++ +ADD ++LN +LAEM+SLLTC+ KS  +K +   +SPE
Sbjct: 432 VKNKRSQFVWTQFSELNAHFQSRADDPQKLNSRLAEMISLLTCNKKSGLKKSN---VSPE 491

Query: 221 LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI 280
            +EIL +M+ R+++LY++LPTNAM I+CTGHGD ++V R+R+MLK+++E    REK+VK+
Sbjct: 492 TKEILKKMNERVQSLYAALPTNAMFIVCTGHGDTSIVHRVRKMLKDEDEIGFDREKLVKV 551

Query: 281 LEELHAQAEVALCFVSVK 299
           LEEL AQAEVALCFV +K
Sbjct: 552 LEELQAQAEVALCFVGIK 566

[Close]

BLAST of Moc11g13470 vs. ExPASy TrEMBL
Match: A0A6J1DJM2 (small RNA degrading nuclease 5 OS=Momordica charantia OX=3673 GN=LOC111021144 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 4.3e-103
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 101 PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE 160
           PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE
Sbjct: 375 PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE 434

Query: 161 VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE 220
           VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE
Sbjct: 435 VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE 494

Query: 221 LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI 280
           LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI
Sbjct: 495 LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI 554

Query: 281 LEELHAQAEVALCFVSVKH 300
           LEELHAQAEVALCFVSVKH
Sbjct: 555 LEELHAQAEVALCFVSVKH 573

[Close]

BLAST of Moc11g13470 vs. ExPASy TrEMBL
Match: A0A6J1EE80 (small RNA degrading nuclease 5-like OS=Cucurbita moschata OX=3662 GN=LOC111433387 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.5e-92
Identity = 175/199 (87.94%), Postives = 194/199 (97.49%), Query Frame = 0


Query: 101 PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE 160
           PEFGSPPSLIRKKLLT+LGE+GKTSSFIDDVSTVKRYSSESSHAFPVTSD+EALSRAKKE
Sbjct: 374 PEFGSPPSLIRKKLLTVLGENGKTSSFIDDVSTVKRYSSESSHAFPVTSDDEALSRAKKE 433

Query: 161 VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE 220
           V+NE+VHFIWTQFSELNSY+KKQ DDEERLNVKLAE++SLLTCD+KSVN+K++SRKIS E
Sbjct: 434 VMNERVHFIWTQFSELNSYHKKQVDDEERLNVKLAELLSLLTCDSKSVNKKRNSRKISVE 493

Query: 221 LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI 280
           LREIL+RMD RIK+LY+SLPTNAMLI+CTGHGDIALVQRLR+MLKEQ+ET ICREKIVKI
Sbjct: 494 LREILSRMDYRIKDLYTSLPTNAMLIVCTGHGDIALVQRLRKMLKEQSETMICREKIVKI 553

Query: 281 LEELHAQAEVALCFVSVKH 300
           LEELHAQAEVALCF S+KH
Sbjct: 554 LEELHAQAEVALCFASIKH 572

[Close]

BLAST of Moc11g13470 vs. ExPASy TrEMBL
Match: A0A6J1J229 (small RNA degrading nuclease 5-like OS=Cucurbita maxima OX=3661 GN=LOC111480556 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 7.6e-92
Identity = 175/199 (87.94%), Postives = 194/199 (97.49%), Query Frame = 0


Query: 101 PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE 160
           PEFGSPPSLIRKKLLTILGE+GKTSSFIDDVSTVKRYSSESSHAFPVTSD+EALSRAKKE
Sbjct: 374 PEFGSPPSLIRKKLLTILGENGKTSSFIDDVSTVKRYSSESSHAFPVTSDDEALSRAKKE 433

Query: 161 VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE 220
           V+NE+VHFIWTQFSELNSY+KKQ DDEERLNVKLAE++SLLTCD+KSVN+K++SRKIS E
Sbjct: 434 VMNERVHFIWTQFSELNSYHKKQVDDEERLNVKLAELLSLLTCDSKSVNKKRNSRKISVE 493

Query: 221 LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI 280
           LREIL+RMDSRIK+LY+SLPTNAMLI+CTGHGDIALVQRLR+MLKEQ+ET I REKIVKI
Sbjct: 494 LREILSRMDSRIKDLYTSLPTNAMLIVCTGHGDIALVQRLRKMLKEQSETMISREKIVKI 553

Query: 281 LEELHAQAEVALCFVSVKH 300
           LE+LHAQAEVALCF S+KH
Sbjct: 554 LEDLHAQAEVALCFASIKH 572

[Close]

BLAST of Moc11g13470 vs. ExPASy TrEMBL
Match: A0A5A7UVD4 (Small RNA degrading nuclease 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G001140 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.6e-89
Identity = 171/204 (83.82%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 96  FGGERPEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALS 155
           F  + P+FGSPPSLIRKKLL ILGE GKTSSFIDD+STVKRYSSESSHAFPVTSD+EALS
Sbjct: 45  FAFKGPDFGSPPSLIRKKLLNILGECGKTSSFIDDISTVKRYSSESSHAFPVTSDDEALS 104

Query: 156 RAKKEVINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSR 215
           RAKKE +NEKVHFIWTQFSELNSY+KKQ DDEE+LNVKLAE++SLLTCDTKSVN+K++  
Sbjct: 105 RAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRNRA 164

Query: 216 KISPELREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICRE 275
           KIS EL+EIL RMDSRI +LY+SLPTNAMLIICTGHGDIALVQRLR+ML+EQ+ETSICRE
Sbjct: 165 KISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDIALVQRLRKMLQEQSETSICRE 224

Query: 276 KIVKILEELHAQAEVALCFVSVKH 300
           KIVK+LEELHAQAEVALCFV  KH
Sbjct: 225 KIVKVLEELHAQAEVALCFVCTKH 248

[Close]

BLAST of Moc11g13470 vs. ExPASy TrEMBL
Match: A0A5D3DMF7 (Small RNA degrading nuclease 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00380 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 2.7e-89
Identity = 170/199 (85.43%), Postives = 188/199 (94.47%), Query Frame = 0


Query: 101 PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE 160
           P+FGSPPSLIRKKLL ILGE GKTSSFIDD+STVKRYSSESSHAFPVTSD+EALSRAKKE
Sbjct: 374 PDFGSPPSLIRKKLLNILGECGKTSSFIDDISTVKRYSSESSHAFPVTSDDEALSRAKKE 433

Query: 161 VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE 220
            +NEKVHFIWTQFSELNSY+KKQ DDEE+LNVKLAE++SLLTCDTKSVN+K++  KIS E
Sbjct: 434 AMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRNRAKISVE 493

Query: 221 LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI 280
           L+EIL RMDSRI +LY+SLPTNAMLIICTGHGDIALVQRLR+ML+EQ+ETSICREKIVK+
Sbjct: 494 LQEILARMDSRINDLYTSLPTNAMLIICTGHGDIALVQRLRKMLQEQSETSICREKIVKV 553

Query: 281 LEELHAQAEVALCFVSVKH 300
           LEELHAQAEVALCFV  KH
Sbjct: 554 LEELHAQAEVALCFVCTKH 572

[Close]

BLAST of Moc11g13470 vs. TAIR 10
Match: AT5G25800.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 246.9 bits (629), Expect = 2.1e-65
Identity = 119/198 (60.10%), Postives = 166/198 (83.84%), Query Frame = 0


Query: 101 PEFGSPPSLIRKKLLTILGESGKTSSFIDDVSTVKRYSSESSHAFPVTSDEEALSRAKKE 160
           P+FGSPP +IRKKLL +L ESGKT+S ID+++ VKRY+SESS+A PV+SD+EALS+A KE
Sbjct: 372 PDFGSPPEVIRKKLLAVLNESGKTTSIIDNINIVKRYASESSNAIPVSSDDEALSKAVKE 431

Query: 161 VINEKVHFIWTQFSELNSYYKKQADDEERLNVKLAEMMSLLTCDTKSVNRKKHSRKISPE 220
           V N++  F+WTQFSELN++++ +ADD ++LN +LAEM+SLLTC+ KS  +K +   +SPE
Sbjct: 432 VKNKRSQFVWTQFSELNAHFQSRADDPQKLNSRLAEMISLLTCNKKSGLKKSN---VSPE 491

Query: 221 LREILTRMDSRIKNLYSSLPTNAMLIICTGHGDIALVQRLRRMLKEQNETSICREKIVKI 280
            +EIL +M+ R+++LY++LPTNAM I+CTGHGD ++V R+R+MLK+++E    REK+VK+
Sbjct: 492 TKEILKKMNERVQSLYAALPTNAMFIVCTGHGDTSIVHRVRKMLKDEDEIGFDREKLVKV 551

Query: 281 LEELHAQAEVALCFVSVK 299
           LEEL AQAEVALCFV +K
Sbjct: 552 LEELQAQAEVALCFVGIK 566

The following BLAST results are available for this feature:

BLAST of Moc11g13470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153687.1	8.8e-103	100.00	small RNA degrading nuclease 5 [Momordica charantia]	[more]
XP_023525579.1	3.2e-92	87.94	small RNA degrading nuclease 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022926206.1	3.2e-92	87.94	small RNA degrading nuclease 5-like [Cucurbita moschata]	[more]
XP_022981433.1	1.6e-91	87.94	small RNA degrading nuclease 5-like [Cucurbita maxima]	[more]
XP_038886453.1	3.0e-90	86.43	small RNA degrading nuclease 5 [Benincasa hispida]	[more]

BLAST of Moc11g13470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L7M4	2.9e-64	60.10	Small RNA degrading nuclease 5 OS=Arabidopsis thaliana OX=3702 GN=SDN5 PE=2 SV=2	[more]

BLAST of Moc11g13470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJM2	4.3e-103	100.00	small RNA degrading nuclease 5 OS=Momordica charantia OX=3673 GN=LOC111021144 PE...	[more]
A0A6J1EE80	1.5e-92	87.94	small RNA degrading nuclease 5-like OS=Cucurbita moschata OX=3662 GN=LOC11143338...	[more]
A0A6J1J229	7.6e-92	87.94	small RNA degrading nuclease 5-like OS=Cucurbita maxima OX=3661 GN=LOC111480556 ...	[more]
A0A5A7UVD4	1.6e-89	83.82	Small RNA degrading nuclease 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DMF7	2.7e-89	85.43	Small RNA degrading nuclease 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Moc11g13470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25800.1	2.1e-65	60.10	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	coord: 101..284
None	No IPR available	PANTHER	PTHR12801:SF115	LD29573P	coord: 101..284
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..29 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g13470.1	Moc11g13470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding