Moc11g13450 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g13450
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ty1-copia retrotransposon protein
Location	chr11: 9902744 .. 9907214 (-)
RNA-Seq Expression	Moc11g13450
Synteny	Moc11g13450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTCCTTTTGGGATAAATTTCTTCTACAAAGTCAAAGACACGTGGCAAATTTAGAGGAATTGTTGGATATGTAGATGGATGAATCTTGAATAAGAAAGTCAAGCAAACGTGTCAAGTTTAGAGATTAAAATGGCTAGTCAAAGAACACATGAGTAGCCAAAATAATTTTTATTTTTTAAAAATTCAATTCTATTTTGGGTCACCCCGTCACTATAAAAGGTTCACTCCCCTGTCATTTCATATCATCCCATTCATCTCAATCTCCACTCTATTCCTTCACTTTTCCACCTCTTTCAACTATCTTAACTGAGCACGAGATTGATTCCACTCACATTCCTACGAGTGCACGTCTGAATTGGAGATTGTGTTAACATTGGGGACCATACCGGCAATAAAATGATTTAGCATCGAGGTTGTGCCGATTTTGCTTTCAAGGCAGTGGTTCCACCCACGACACAATGTTTTTACCTTCTGGTTCCAATTTTTTCCTTTATTTTCCAACAGTTGAAAGCAAAATCTACTAATGGCTGCTATCCGATCTGGGAAGGTCCTACTGCCACTGTTTCAGTTGCTGCTGCTGTTCCCGGGATGTCTACTGCCGTCGAAGCTGACAAATTCGAGAAAGACAACAAAACGATCCGTGGGCATCTTCTTAACCATATGAACGACTTTCTCTTTGATCTCTTTGTAGTTCAAAAATCTGCAAAGGTCATTTGGGACACGTTAGAGTCTAGATATGGTGGGGATGATGCAGGCAGAAGGAAGTACGTCGTCGGTAAATGGCTTCAATTTCAAATGTCAGACGACAAACCGGTGATGGACCAGGTTCATGAGTACGAAAACCTAGTGGCAAGTGTGTTGTCTGAAGGCATGAAGATGTGTGAGATGCTTCAGGCCAATGTGTTGCTCGAGAAATTCCCTCATTCCTAGAGTGATTATCGCAACCACTTGAAATATAAGAAGAATGACCTGACTCTACAAGAGCTTATCAGTCACGTGCGCACGGAGGAAGCCAACAGGCTAAAGGATAAGCTCTCTTCTCAATCCCTAAATTCAATTAAAGCTAATTTAGTTTAATCTTCTAGTGCTTCCAAAGACAGGTTCAAGAATAAAGGGAAGACAATTGTAAGGGATAGAGCTCAAAAGAACAAAGGTCTCCAACCTAAAAATACTGGTGGAAGAATCGAGAAATCCAAACTAGTCTGCTATGTCTGTGAAAAACCCGAGCACAAATCCTATCAGTGCACTCAGAAGAAAGATAGGATAGATCAAAGAGCTACTCCACAAGCCAACCTTACAGAGACTGATGATATCATTACCACTGTGGTTGTAGAAACAAATCTAGTAGAGAACAAATCAGACTGGATTCTTGACACGGGAGCATCCAGACATTTCTGCTCGAACCGTGACCTCTTCCATGACTTCCAGGACTCTGCCGACGGTGAATGTGTTTTCATGGGAAACTCTGCCACAGTTGGAGTACTTGGGAAAGGGAAGGTTCTCTTGAAACTCACATCTGGCAAAACTTTATCATTAAGTAATGTGTTGTATGTTCCTTCCCTGCGTAGGAATCTGGTGTCAAGAGGTCTACTGAATCGAGCCGGACTTAGGATTGTGTTTAAGGCCAACAAGGTTATTATCACAAAAAATGGTGACTTTGTTGGTAAGGGCTATTTAGCAGATGGTTTTTTTGTTCTCAACACTACTTCTTCAAATGAAATTAATTCTAGTTCTGCTTACATCGTTGAGTCTCTTGATGTGTGACATGGTAGATTAGGGCTTGTAAATATTGCATCAATTAAAAGGCTGAAGACTCTAAATTTAATTAATGATTTCGATTTGCCTGAAACTACAAAGTGTCATGTCTGTGTAGAAGCAAAGTTTGCTAAAAAGCCTTTTAAACATGTCACTACAAGGTGTACTGAACTCCTAGAATTAATTAATTCTGATTTATCTAATTTCAAAAACACAACTAGCAGAGGTGGAAAAAAATACTATATTTCTTTTGTTGATGATTTTTCTCGATATACAAAAATATATCTCCTAAAATCTAAAGATGAACCTAGTAGTATGTTTTTGAAATTCAAAGCTGAAGTAGAAAACCAATTAGACAGGAAAATAAAAAGAATAAGATCAAATAGGGGTGGTGAATATAGTGATAATTCGCTTAGAGATTTTTGTGAATCAAGTGGAATTATACATGAATTTATTGCTCCATATTCACCTCAACAGAATGGAATAGCTGACGGAAAAATAGAACTTTAAAATAAATGATAAATGTCATGCTATTAAGTTTTGGTCTATCTGATGATATGTGGGGAGAAGCTGCACTTTCTGCATGTTTTATTCTTAACAGGGTCCCTCAAAAAAGGCTAGATAAGACATCATACGAGCTTTGGAAAGGGTATTCGCCAAACCTGAGCTAGTTGAAGGCATGGGAGTGCTTAGCAAAGGTGGCATATCCAGCATTCAAAAAACCTACAGTTGGATCTATTACTTTTGATTGTGTTTTCATTGGTTATGCTCAAAATTGTTTTGCATATAGGTTCATGAGTTTGAATGACAAATCATATGTGAATATAGAGATGCTGTATTTTTTGAAAATATCTTCCATATGATTAGAACTAATGGTGAATCTGGTGGGACATCAAAAACTGCATGCATATTGTTGTCTTCCACTTCTGTTGACATGATAGACTCTGAACCTAGATCTGATGATAAAATAGATTTTGAACCTAGGAGAAGTAAAAGGCAAAAGGTTAGTAAAAGTTTTGGGTCTGACTTCCTAACTTCATATCTGGTAGAAAACTTTGACAAGATAGATGATTAGTTCACTTGCATGTATTTGATAGACGAAGATCCTAAAACCTACCAAGAGGCTATAAATGCCTTAGATTCTAGCTTATGAAAAGAAGCTATTAAAATTGAACTAGACTCCATAGTTATGAATCAAACCTGGGAATTGGTAGATTTACCTGTAGAAAACAAACCTATTAAGTGTAAATGGATCTTTAAAAGAAAAATGAGACCAGATGGTACGATAGAAAAATACAAAGCTAGACTAGTAGTTGTAGGTTACACACTATGGCATTGATTACTTCGATACGTACTCTCCTGTATCCAAGATTGCTACAATTAGATCTTTGATAGCTTTGCTGCTATTCAAGGCTTAGTAATACATCAGATGTATGTAAAAACAACTTTCCTCAATGGTGATTTAGAAGAGGAGATCTACATGACACAACCTAAATATTTTTTAGCTACTGGTCAAGAAAATAAAGTTTGCAAGCTAAAAAAATCTCTCTTACCTAAAACAAGCTCCTAAATAATGGTATGAAAAATTTAATGGCACTTTGGTAAACAATGGTTATAAAGTAAATTGCTTTTTGATACATGTGTTTACTCAAAGTTGTTTGGAGCTGATTGTGTGATAATATGCCTGTATGTTGATGACATGCTCATTTTTTGTTCAAACTTAGATATCATTAACGAGACCAAGTTACTCATTTTTTCACATTTTGAAATGAAAGATTTAGGAGAGGCTGATGTAATATTTGGTGTAAAAATAAGGAAAAATGATCATGGATATTCCTTATGTCAATCACACTACATCGAGAGAATGCTGAAAAAATTTGATCACTTTAATAGTTATCTGTAAGAACACCTTATGATGCCAGCATGAGTCTTAAAAAGAATCAATGCGATAGTGTATCTCAATCCGAATATGCAAAGATTATAGGTAGTGTTAAGTTTCTAATGAATTATACTAGACCTGATATTGCATATGCGGTGAGTAAACTAAGTAGATACACTCATAATCCAAGTAAAGATCATTGGACTGCTCTATATCGATTGCTAAGGTATTTTAGGGATACAATGGATTATTGTTTGCATTTTAACGAGTTTTCTATTGTGCTAGAAGGATATTGTAATGCAAATTGGATTACAGATAATGATGAAGTGAGTTCTACCAGCGGGTATGTGTTTAGTTTTGGCGGTGGAGCTATCTCATGGAAATCAGTGAAACAAACATGTATTGCTCGCTCTACCATAGAATCTGAGTTCATAGCACTTGAACTGGCAGGTCAAGAGGTTGAAGGGTTGAGAAGTCTTTTTAGAAATGTGCCACTGTGGGGAAAGTCTGTACATGTATCCATACATTGTGACTCACAAGCTGCCATAGAGATTTCAAAAAATAGTGTATACAATGGCAAGAGACGTCACATACGTCTAAGACATGAAGCTGTGAAACAACTGTTGAAAAATGGAATTATATCTTTGGAGTATGTGAGGTCCGAGAGAAACTTAGCAGATCCTCTCACTAAAGGCCAAACAAGGAAAGTAATTCTGGAGTCCTCAAGATGTATAAGACTCAAGCCATGATCTTTTCTCACTAGCATGAATCCATAGCCCTTCTTTTGGGTGGTCCATGTATGGACTTGATGGATGTAGTGAAGCATATGTGA

mRNA sequence

ATGTTGAAAGCAAAATCTACTAATGGCTGCTATCCGATCTGGGAAGGTCCTACTGCCACTGTTTCAGTTGCTGCTGCTGTTCCCGGGATGTTCAAGAATAAAGGGAAGACAATTGTAAGGGATAGAGCTCAAAAGAACAAAGGTCTCCAACCTAAAAATACTGGTGGAAGAATCGAGAAATCCAAACTAGTCTGCTATGTCTGTGAAAAACCCGAGCACAAATCCTATCAGTGCACTCAGAAGAAAGATAGGATAGATCAAAGAGCTACTCCACAAGCCAACCTTACAGAGACTGATGATATCATTACCACTGTGGTTGTAGAAACAAATCTAGTAGAGAACAAATCAGACTGGATTCTTGACACGGGAGCATCCAGACATTTCTGCTCGAACCGTGACCTCTTCCATGACTTCCAGGACTCTGCCGACGGTGAATGTGTTTTCATGGGAAACTCTGCCACAGTTGGAGTACTTGGGAAAGGGAAGCATGAATCCATAGCCCTTCTTTTGGGTGGTCCATGTATGGACTTGATGGATGTAGTGAAGCATATGTGA

Coding sequence (CDS)

ATGTTGAAAGCAAAATCTACTAATGGCTGCTATCCGATCTGGGAAGGTCCTACTGCCACTGTTTCAGTTGCTGCTGCTGTTCCCGGGATGTTCAAGAATAAAGGGAAGACAATTGTAAGGGATAGAGCTCAAAAGAACAAAGGTCTCCAACCTAAAAATACTGGTGGAAGAATCGAGAAATCCAAACTAGTCTGCTATGTCTGTGAAAAACCCGAGCACAAATCCTATCAGTGCACTCAGAAGAAAGATAGGATAGATCAAAGAGCTACTCCACAAGCCAACCTTACAGAGACTGATGATATCATTACCACTGTGGTTGTAGAAACAAATCTAGTAGAGAACAAATCAGACTGGATTCTTGACACGGGAGCATCCAGACATTTCTGCTCGAACCGTGACCTCTTCCATGACTTCCAGGACTCTGCCGACGGTGAATGTGTTTTCATGGGAAACTCTGCCACAGTTGGAGTACTTGGGAAAGGGAAGCATGAATCCATAGCCCTTCTTTTGGGTGGTCCATGTATGGACTTGATGGATGTAGTGAAGCATATGTGA

Protein sequence

MLKAKSTNGCYPIWEGPTATVSVAAAVPGMFKNKGKTIVRDRAQKNKGLQPKNTGGRIEKSKLVCYVCEKPEHKSYQCTQKKDRIDQRATPQANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSATVGVLGKGKHESIALLLGGPCMDLMDVVKHM

Homology

[Close]

BLAST of Moc11g13450 vs. NCBI nr
Match: XP_022153695.1 (uncharacterized protein LOC111021147 [Momordica charantia])

HSP 1 Score: 271.2 bits (692), Expect = 6.7e-69
Identity = 136/152 (89.47%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 30  MFKNKGKTIVRDRAQKNKGLQPKNTGGRIEKSKLVCYVCEKPEHKSYQCTQKKDRIDQRA 89
           +FKNKGKTIVRDRAQKNKGLQPKNTGGRIEKSKLVCYVCEKPEHKSYQCTQKKDRIDQRA
Sbjct: 105 VFKNKGKTIVRDRAQKNKGLQPKNTGGRIEKSKLVCYVCEKPEHKSYQCTQKKDRIDQRA 164

Query: 90  TPQANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFM 149
           TPQANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFM
Sbjct: 165 TPQANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFM 224

Query: 150 GNSATVGVLGKGKHESIALLLGGPCMDLMDVV 182
           GNSATVGVLGKGK   +  L  G  + L +V+
Sbjct: 225 GNSATVGVLGKGK--VLLKLTSGKTLSLSNVL 254

[Close]

BLAST of Moc11g13450 vs. NCBI nr
Match: XP_022156023.1 (uncharacterized protein LOC111022991 [Momordica charantia])

HSP 1 Score: 215.3 bits (547), Expect = 4.4e-52
Identity = 106/142 (74.65%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 21  VSVAAAVPGMFKNKGKTIVRDRAQKNKGLQPKNTGGRIEKSKLVCYVCEKPEHKSYQCTQ 80
           V  ++A    FK KGK I RDRAQKNKGL+PKN GGR+EK KLVCYVCEKP HKSYQCTQ
Sbjct: 118 VESSSASKDRFKRKGKPIARDRAQKNKGLRPKNIGGRMEKXKLVCYVCEKPGHKSYQCTQ 177

Query: 81  KKDRIDQRATPQANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQD 140
           KKDR DQR  PQAN+ ET +II  VVVE NLVENKS+WILDTGASRHFC NRDLFHDFQD
Sbjct: 178 KKDRKDQRIAPQANIVETXNIIAXVVVEANLVENKSNWILDTGASRHFCLNRDLFHDFQD 237

Query: 141 SADGECVFMGNSATVGVLGKGK 163
           SA+GECVFMGN   +  LGKG+
Sbjct: 238 SANGECVFMGNRPQLEYLGKGR 259

[Close]

BLAST of Moc11g13450 vs. NCBI nr
Match: KAA0040554.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 2.3e-40
Identity = 89/150 (59.33%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 40  RDRAQKNKGLQPKN--------TGGRIEKSKLVCYVCEKPEHKSYQCTQKKDRIDQRATP 99
           RDR ++ KG + KN        TGG+I+K KLVCYVC K  HKSYQC Q+K R  Q+ TP
Sbjct: 250 RDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCRKEGHKSYQCNQRKGRPSQKPTP 309

Query: 100 QANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGN 159
           QANL E D  I   +VE NL+ENK+DWILDTGASRHFC+NR+L HD++D+ADGECVFMGN
Sbjct: 310 QANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGN 369

Query: 160 SATVGVLGKGKHESIALLLGGPCMDLMDVV 182
           SAT GV+GKGK   I  L  G  + L +V+
Sbjct: 370 SATAGVIGKGK--VILKLTSGKTLSLSNVL 397

[Close]

BLAST of Moc11g13450 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 3.8e-40
Identity = 89/150 (59.33%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 40  RDRAQKNKGLQPKN--------TGGRIEKSKLVCYVCEKPEHKSYQCTQKKDRIDQRATP 99
           RDR ++ KG + KN        TGG+I+K KLVCYVC K  HKSYQC Q+K R  Q+ TP
Sbjct: 249 RDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPSQKPTP 308

Query: 100 QANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGN 159
           QANL E D  I   +VE NL+ENK+DWILDTGASRHFC+NR+L HD++D+ADGECVFMGN
Sbjct: 309 QANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGN 368

Query: 160 SATVGVLGKGKHESIALLLGGPCMDLMDVV 182
           SAT GV+GKGK   I  L  G  + L +V+
Sbjct: 369 SATAGVIGKGK--VILKLTSGKTLSLSNVL 396

[Close]

BLAST of Moc11g13450 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 3.8e-40
Identity = 89/150 (59.33%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 40  RDRAQKNKGLQPKN--------TGGRIEKSKLVCYVCEKPEHKSYQCTQKKDRIDQRATP 99
           RDR ++ KG + KN        TGG+I+K KLVCYVC K  HKSYQC Q+K R  Q+ TP
Sbjct: 249 RDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPSQKPTP 308

Query: 100 QANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGN 159
           QANL E D  I   +VE NL+ENK+DWILDTGASRHFC+NR+L HD++D+ADGECVFMGN
Sbjct: 309 QANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGN 368

Query: 160 SATVGVLGKGKHESIALLLGGPCMDLMDVV 182
           SAT GV+GKGK   I  L  G  + L +V+
Sbjct: 369 SATAGVIGKGK--VILKLTSGKTLSLSNVL 396

[Close]

BLAST of Moc11g13450 vs. ExPASy TrEMBL
Match: A0A6J1DHJ4 (uncharacterized protein LOC111021147 OS=Momordica charantia OX=3673 GN=LOC111021147 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.3e-69
Identity = 136/152 (89.47%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 30  MFKNKGKTIVRDRAQKNKGLQPKNTGGRIEKSKLVCYVCEKPEHKSYQCTQKKDRIDQRA 89
           +FKNKGKTIVRDRAQKNKGLQPKNTGGRIEKSKLVCYVCEKPEHKSYQCTQKKDRIDQRA
Sbjct: 105 VFKNKGKTIVRDRAQKNKGLQPKNTGGRIEKSKLVCYVCEKPEHKSYQCTQKKDRIDQRA 164

Query: 90  TPQANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFM 149
           TPQANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFM
Sbjct: 165 TPQANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFM 224

Query: 150 GNSATVGVLGKGKHESIALLLGGPCMDLMDVV 182
           GNSATVGVLGKGK   +  L  G  + L +V+
Sbjct: 225 GNSATVGVLGKGK--VLLKLTSGKTLSLSNVL 254

[Close]

BLAST of Moc11g13450 vs. ExPASy TrEMBL
Match: A0A6J1DPG7 (uncharacterized protein LOC111022991 OS=Momordica charantia OX=3673 GN=LOC111022991 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.1e-52
Identity = 106/142 (74.65%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 21  VSVAAAVPGMFKNKGKTIVRDRAQKNKGLQPKNTGGRIEKSKLVCYVCEKPEHKSYQCTQ 80
           V  ++A    FK KGK I RDRAQKNKGL+PKN GGR+EK KLVCYVCEKP HKSYQCTQ
Sbjct: 118 VESSSASKDRFKRKGKPIARDRAQKNKGLRPKNIGGRMEKXKLVCYVCEKPGHKSYQCTQ 177

Query: 81  KKDRIDQRATPQANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQD 140
           KKDR DQR  PQAN+ ET +II  VVVE NLVENKS+WILDTGASRHFC NRDLFHDFQD
Sbjct: 178 KKDRKDQRIAPQANIVETXNIIAXVVVEANLVENKSNWILDTGASRHFCLNRDLFHDFQD 237

Query: 141 SADGECVFMGNSATVGVLGKGK 163
           SA+GECVFMGN   +  LGKG+
Sbjct: 238 SANGECVFMGNRPQLEYLGKGR 259

[Close]

BLAST of Moc11g13450 vs. ExPASy TrEMBL
Match: A0A5A7TAR9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001180 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 89/150 (59.33%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 40  RDRAQKNKGLQPKN--------TGGRIEKSKLVCYVCEKPEHKSYQCTQKKDRIDQRATP 99
           RDR ++ KG + KN        TGG+I+K KLVCYVC K  HKSYQC Q+K R  Q+ TP
Sbjct: 250 RDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCRKEGHKSYQCNQRKGRPSQKPTP 309

Query: 100 QANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGN 159
           QANL E D  I   +VE NL+ENK+DWILDTGASRHFC+NR+L HD++D+ADGECVFMGN
Sbjct: 310 QANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGN 369

Query: 160 SATVGVLGKGKHESIALLLGGPCMDLMDVV 182
           SAT GV+GKGK   I  L  G  + L +V+
Sbjct: 370 SATAGVIGKGK--VILKLTSGKTLSLSNVL 397

[Close]

BLAST of Moc11g13450 vs. ExPASy TrEMBL
Match: A0A5D3DJE2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004120 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.9e-40
Identity = 89/150 (59.33%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 40  RDRAQKNKGLQPKN--------TGGRIEKSKLVCYVCEKPEHKSYQCTQKKDRIDQRATP 99
           RDR ++ KG + KN        TGG+I+K KLVCYVC K  HKSYQC Q+K R  Q+ TP
Sbjct: 145 RDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPSQKPTP 204

Query: 100 QANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGN 159
           QANL E D  I   +VE NL+ENK+DWILDTGASRHFC+NR+L HD++D+ADGECVFMGN
Sbjct: 205 QANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGN 264

Query: 160 SATVGVLGKGKHESIALLLGGPCMDLMDVV 182
           SAT GV+GKGK   I  L  G  + L +V+
Sbjct: 265 SATAGVIGKGK--VILKLTSGKTLSLSNVL 292

[Close]

BLAST of Moc11g13450 vs. ExPASy TrEMBL
Match: A0A5D3DSQ3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00930 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.9e-40
Identity = 89/150 (59.33%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 40  RDRAQKNKGLQPKN--------TGGRIEKSKLVCYVCEKPEHKSYQCTQKKDRIDQRATP 99
           RDR ++ KG + KN        TGG+I+K KLVCYVC K  HKSYQC Q+K R  Q+ TP
Sbjct: 249 RDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPSQKPTP 308

Query: 100 QANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGN 159
           QANL E D  I   +VE NL+ENK+DWILDTGASRHFC+NR+L HD++D+ADGECVFMGN
Sbjct: 309 QANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGN 368

Query: 160 SATVGVLGKGKHESIALLLGGPCMDLMDVV 182
           SAT GV+GKGK   I  L  G  + L +V+
Sbjct: 369 SATAGVIGKGK--VILKLTSGKTLSLSNVL 396

The following BLAST results are available for this feature:

BLAST of Moc11g13450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153695.1	6.7e-69	89.47	uncharacterized protein LOC111021147 [Momordica charantia]	[more]
XP_022156023.1	4.4e-52	74.65	uncharacterized protein LOC111022991 [Momordica charantia]	[more]
KAA0040554.1	2.3e-40	59.33	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	3.8e-40	59.33	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056761.1	3.8e-40	59.33	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc11g13450 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g13450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHJ4	3.3e-69	89.47	uncharacterized protein LOC111021147 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1DPG7	2.1e-52	74.65	uncharacterized protein LOC111022991 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5A7TAR9	1.1e-40	59.33	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DJE2	1.9e-40	59.33	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DSQ3	1.9e-40	59.33	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Moc11g13450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 73..162
None	No IPR available	PANTHER	PTHR47592:SF5	OS08G0421300 PROTEIN	coord: 73..162
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 48..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g13450.1	Moc11g13450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding