Moc11g11460 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g11460
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CRS2-associated factor 2, mitochondrial
Location	chr11: 8355837 .. 8356577 (+)
RNA-Seq Expression	Moc11g11460
Synteny	Moc11g11460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTGGAAACCTTATGCGCCAATATATCCAAAGCTTGTGAAGAATGTGGCTGATGGCTTATCATTTGAGGAAACGAAGGAAATGAGAAGTAGAGGATTGAATTCTCCTCCTCTAATGAAACTTAGTAAGTGAATGTTGTTCCAATGAGCTATCCATTCTTCTTTGTTTTAGGTCAAATTGCATTTTTAATCTATATGCTTTAATGTTACAATACATGGGTCGATCTTAAGGTATTATTTTGGTTGAAAAGCAAAAAAGAGGAGGCTGTGGCTAGCCAACCTTTATTTTATGTACAAATTATGTATGCGTTTGAGAGATGAATGGTAAAGATGGTGTTTGTAGTTTTTATTAACCTGAACTTTCACCTTCGGATGTATTTTCTGTAGCAAGGAATGGTGTATATGTTAACGTCGTCGAGAGAGTGAGAGAGGCTTTCGAGTTCGAGGATGTGGTTAGACTAGATTGCACTCATGTTGGCAGCAGTGACTGCAAACAAATAGGTGTTAAATTGAGGGTACAGCTCTTCTCTTCCACTTTTCTTTTGTAATTCTCATACTTTTAATGCCAAGAAGTTTGTTTCTTATCTATAAGATACTTCCTCTACCAAAAATCCAGGGTTTGGTACCTTGTGTTCCCATTTTGTTCAAGGATGAGCAGATTATACTGTGGAGAGGGAAGAAAGATCATCGAGAGGACGTGAACTCGAAGATGGTAGATTCCTGGAATGTGTATGTTTAA

mRNA sequence

ATGTTGTGGAAACCTTATGCGCCAATATATCCAAAGCTTGTGAAGAATGTGGCTGATGGCTTATCATTTGAGGAAACGAAGGAAATGAGAAGTAGAGGATTGAATTCTCCTCCTCTAATGAAACTTACAAGGAATGGTGTATATGTTAACGTCGTCGAGAGAGTGAGAGAGGCTTTCGAGTTCGAGGATGTGGTTAGACTAGATTGCACTCATGTTGGCAGCAGTGACTGCAAACAAATAGGTGTTAAATTGAGGGGTTTGGTACCTTGTGTTCCCATTTTGTTCAAGGATGAGCAGATTATACTGTGGAGAGGGAAGAAAGATCATCGAGAGGACGTGAACTCGAAGATGGTAGATTCCTGGAATGTGTATGTTTAA

Coding sequence (CDS)

ATGTTGTGGAAACCTTATGCGCCAATATATCCAAAGCTTGTGAAGAATGTGGCTGATGGCTTATCATTTGAGGAAACGAAGGAAATGAGAAGTAGAGGATTGAATTCTCCTCCTCTAATGAAACTTACAAGGAATGGTGTATATGTTAACGTCGTCGAGAGAGTGAGAGAGGCTTTCGAGTTCGAGGATGTGGTTAGACTAGATTGCACTCATGTTGGCAGCAGTGACTGCAAACAAATAGGTGTTAAATTGAGGGGTTTGGTACCTTGTGTTCCCATTTTGTTCAAGGATGAGCAGATTATACTGTGGAGAGGGAAGAAAGATCATCGAGAGGACGTGAACTCGAAGATGGTAGATTCCTGGAATGTGTATGTTTAA

Protein sequence

MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFEFEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNSKMVDSWNVYV

Homology

[Close]

BLAST of Moc11g11460 vs. NCBI nr
Match: XP_022139762.1 (CRS2-associated factor 2, mitochondrial [Momordica charantia])

HSP 1 Score: 265.8 bits (678), Expect = 1.9e-67
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE
Sbjct: 241 MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 300

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNSKMVDS 120
           FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNSKMVDS
Sbjct: 301 FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNSKMVDS 360

Query: 121 WNVYV 126
           WNVYV
Sbjct: 361 WNVYV 365

[Close]

BLAST of Moc11g11460 vs. NCBI nr
Match: XP_008454555.1 (PREDICTED: CRS2-associated factor 2, mitochondrial [Cucumis melo] >KAA0046461.1 CRS2-associated factor 2 [Cucumis melo var. makuwa] >TYJ97751.1 CRS2-associated factor 2 [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 1.8e-57
Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKPYAPIYPKLVKNVADGLSF+ETKEMRSRGLNSPPLMKLTRNGVYVNVV+RVREAF+
Sbjct: 243 MLWKPYAPIYPKLVKNVADGLSFDETKEMRSRGLNSPPLMKLTRNGVYVNVVDRVREAFK 302

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNS 116
           FE+VVRLDCTHVGSSDCKQIGVKLR LVPCVPILFKDEQIILWRGKKDH ED+NS
Sbjct: 303 FEEVVRLDCTHVGSSDCKQIGVKLRDLVPCVPILFKDEQIILWRGKKDHEEDMNS 357

[Close]

BLAST of Moc11g11460 vs. NCBI nr
Match: XP_038900170.1 (CRS2-associated factor 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-56
Identity = 106/115 (92.17%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKPYAPIYPKLVKNVADGLSF+ETKEMR+RGLNSPPLMKLTRNGVYVNVV+RVREAF+
Sbjct: 243 MLWKPYAPIYPKLVKNVADGLSFDETKEMRNRGLNSPPLMKLTRNGVYVNVVDRVREAFK 302

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNS 116
           FE+VVRLDC HVGSSDCKQIGVKLR LVPCVPILFKDEQIILWRGKKDH ED+NS
Sbjct: 303 FEEVVRLDCIHVGSSDCKQIGVKLRVLVPCVPILFKDEQIILWRGKKDHEEDMNS 357

[Close]

BLAST of Moc11g11460 vs. NCBI nr
Match: XP_004151957.1 (CRS2-associated factor 2, mitochondrial [Cucumis sativus] >KGN57976.1 hypothetical protein Csa_010344 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 4.4e-56
Identity = 106/115 (92.17%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKPYAPIYPKLVKNVAD LSF+ETKEMRSRGLNSPPLMKLTRNGVYVNVV+RVREAF+
Sbjct: 244 MLWKPYAPIYPKLVKNVADDLSFDETKEMRSRGLNSPPLMKLTRNGVYVNVVDRVREAFK 303

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNS 116
           FE+VVRLDCTHVGSSDCKQIGVKLR LVPCVPILFK+EQIILWRGKKDH ED+NS
Sbjct: 304 FEEVVRLDCTHVGSSDCKQIGVKLRDLVPCVPILFKNEQIILWRGKKDHEEDMNS 358

[Close]

BLAST of Moc11g11460 vs. NCBI nr
Match: XP_022936437.1 (CRS2-associated factor 2, mitochondrial [Cucurbita moschata])

HSP 1 Score: 227.6 bits (579), Expect = 5.8e-56
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKPYAPIYPKLVKNVADGLSFEETKEMR RGLNSPPLMKLTRNGVYVNVVERVREAF 
Sbjct: 242 MLWKPYAPIYPKLVKNVADGLSFEETKEMRGRGLNSPPLMKLTRNGVYVNVVERVREAFG 301

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNS 116
           FE+VVRLDCTHVGSSDCK+IGVKLR LVPCVPILFKDEQIILWRGK+D  EDVNS
Sbjct: 302 FEEVVRLDCTHVGSSDCKRIGVKLRDLVPCVPILFKDEQIILWRGKRDREEDVNS 356

[Close]

BLAST of Moc11g11460 vs. ExPASy Swiss-Prot
Match: Q9FFU1 (CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g54890 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.9e-49
Identity = 90/113 (79.65%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKP+ PIYP+LVKNVADGL FEETKEMR+RGL+SP LMKLTRNGVYVNVV RVRE FE
Sbjct: 243 MLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFE 302

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDV 114
            E++VRLDCTHVG SDCK+IGVKL+ +VPCVPILFKDEQIILWRGK+   E++
Sbjct: 303 TEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGKRTGEEEL 355

[Close]

BLAST of Moc11g11460 vs. ExPASy Swiss-Prot
Match: Q0J7J7 (CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0188000 PE=2 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 2.7e-48
Identity = 89/114 (78.07%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKP APIYP+LV+NVADGL+FE+TKE+R+ GLNS PLMKLTRNGVYVNVV+RVREAF+
Sbjct: 245 MLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFK 304

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVN 115
             +VVRLDC+HVGSSDCK+IGVKLR LVPCVP+LFKDEQIILWRGK      V+
Sbjct: 305 TVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGKVKQENSVS 358

[Close]

BLAST of Moc11g11460 vs. ExPASy Swiss-Prot
Match: Q5VMQ5 (CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0495900 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-31
Identity = 58/105 (55.24%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKP AP+YP+LVK + DGL+ +E ++MR RG   PP+ KL +NGVY+N+V++VREAFE
Sbjct: 283 MLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFE 342

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRG 106
             D+VR+DC+ +  SDC++IG KL+ LVPC  + F+ E I++WRG
Sbjct: 343 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRG 387

[Close]

BLAST of Moc11g11460 vs. ExPASy Swiss-Prot
Match: Q84N49 (CRS2-associated factor 1, chloroplastic OS=Zea mays OX=4577 GN=CAF1 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-30
Identity = 58/105 (55.24%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKP AP+YP+LV  V  GL+ +E  EMR+RG   PP+ KL +NGVY N+V +VREAFE
Sbjct: 283 MLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFE 342

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRG 106
             D+VR+DC+ +  SDC++IG KL+ LVPC+ + F+ E I++WRG
Sbjct: 343 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRG 387

[Close]

BLAST of Moc11g11460 vs. ExPASy Swiss-Prot
Match: Q9LDA9 (CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g23400 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 9.7e-30
Identity = 58/120 (48.33%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKP AP+YPKL++ V +GL+ EE  E R +G +  P+ KL++NGVYV++V+ VR+AFE
Sbjct: 301 MLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFE 360

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNSKMVDS 120
              +V++DC  +  SD K+IG KL+ LVPCV + F DEQI++WRG++     V++ ++ S
Sbjct: 361 LSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWKSRFVDNPLIPS 420

[Close]

BLAST of Moc11g11460 vs. ExPASy TrEMBL
Match: A0A6J1CEV8 (CRS2-associated factor 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111010593 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 9.3e-68
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE
Sbjct: 241 MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 300

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNSKMVDS 120
           FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNSKMVDS
Sbjct: 301 FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNSKMVDS 360

Query: 121 WNVYV 126
           WNVYV
Sbjct: 361 WNVYV 365

[Close]

BLAST of Moc11g11460 vs. ExPASy TrEMBL
Match: A0A5D3BGH7 (CRS2-associated factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00550 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.7e-58
Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKPYAPIYPKLVKNVADGLSF+ETKEMRSRGLNSPPLMKLTRNGVYVNVV+RVREAF+
Sbjct: 243 MLWKPYAPIYPKLVKNVADGLSFDETKEMRSRGLNSPPLMKLTRNGVYVNVVDRVREAFK 302

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNS 116
           FE+VVRLDCTHVGSSDCKQIGVKLR LVPCVPILFKDEQIILWRGKKDH ED+NS
Sbjct: 303 FEEVVRLDCTHVGSSDCKQIGVKLRDLVPCVPILFKDEQIILWRGKKDHEEDMNS 357

[Close]

BLAST of Moc11g11460 vs. ExPASy TrEMBL
Match: A0A1S3BYZ9 (CRS2-associated factor 2, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494948 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.7e-58
Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKPYAPIYPKLVKNVADGLSF+ETKEMRSRGLNSPPLMKLTRNGVYVNVV+RVREAF+
Sbjct: 243 MLWKPYAPIYPKLVKNVADGLSFDETKEMRSRGLNSPPLMKLTRNGVYVNVVDRVREAFK 302

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNS 116
           FE+VVRLDCTHVGSSDCKQIGVKLR LVPCVPILFKDEQIILWRGKKDH ED+NS
Sbjct: 303 FEEVVRLDCTHVGSSDCKQIGVKLRDLVPCVPILFKDEQIILWRGKKDHEEDMNS 357

[Close]

BLAST of Moc11g11460 vs. ExPASy TrEMBL
Match: A0A0A0LD46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417680 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 106/115 (92.17%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKPYAPIYPKLVKNVAD LSF+ETKEMRSRGLNSPPLMKLTRNGVYVNVV+RVREAF+
Sbjct: 244 MLWKPYAPIYPKLVKNVADDLSFDETKEMRSRGLNSPPLMKLTRNGVYVNVVDRVREAFK 303

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNS 116
           FE+VVRLDCTHVGSSDCKQIGVKLR LVPCVPILFK+EQIILWRGKKDH ED+NS
Sbjct: 304 FEEVVRLDCTHVGSSDCKQIGVKLRDLVPCVPILFKNEQIILWRGKKDHEEDMNS 358

[Close]

BLAST of Moc11g11460 vs. ExPASy TrEMBL
Match: A0A6J1F8G1 (CRS2-associated factor 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111443056 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-56
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKPYAPIYPKLVKNVADGLSFEETKEMR RGLNSPPLMKLTRNGVYVNVVERVREAF 
Sbjct: 242 MLWKPYAPIYPKLVKNVADGLSFEETKEMRGRGLNSPPLMKLTRNGVYVNVVERVREAFG 301

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNS 116
           FE+VVRLDCTHVGSSDCK+IGVKLR LVPCVPILFKDEQIILWRGK+D  EDVNS
Sbjct: 302 FEEVVRLDCTHVGSSDCKRIGVKLRDLVPCVPILFKDEQIILWRGKRDREEDVNS 356

[Close]

BLAST of Moc11g11460 vs. TAIR 10
Match: AT5G54890.1 (RNA-binding CRS1 / YhbY (CRM) domain-containing protein )

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-50
Identity = 90/113 (79.65%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKP+ PIYP+LVKNVADGL FEETKEMR+RGL+SP LMKLTRNGVYVNVV RVRE FE
Sbjct: 243 MLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFE 302

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDV 114
            E++VRLDCTHVG SDCK+IGVKL+ +VPCVPILFKDEQIILWRGK+   E++
Sbjct: 303 TEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGKRTGEEEL 355

[Close]

BLAST of Moc11g11460 vs. TAIR 10
Match: AT1G23400.1 (RNA-binding CRS1 / YhbY (CRM) domain-containing protein )

HSP 1 Score: 131.0 bits (328), Expect = 6.9e-31
Identity = 58/120 (48.33%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKP AP+YPKL++ V +GL+ EE  E R +G +  P+ KL++NGVYV++V+ VR+AFE
Sbjct: 301 MLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFE 360

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKKDHREDVNSKMVDS 120
              +V++DC  +  SD K+IG KL+ LVPCV + F DEQI++WRG++     V++ ++ S
Sbjct: 361 LSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWKSRFVDNPLIPS 420

[Close]

BLAST of Moc11g11460 vs. TAIR 10
Match: AT4G31010.1 (RNA-binding CRS1 / YhbY (CRM) domain-containing protein )

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-30
Identity = 58/114 (50.88%), Postives = 79/114 (69.30%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKP+ P+YP+L+K   DGLS +ETK MR +GL  P L KL +NG Y ++V  VR+AF 
Sbjct: 259 MLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFL 318

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGK--KDHRED 113
             ++VR+DC  +   D K+IG KLR LVPC+ + F  EQ+++WRGK  K  +ED
Sbjct: 319 VSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKDYKPPKED 372

[Close]

BLAST of Moc11g11460 vs. TAIR 10
Match: AT2G20020.1 (RNA-binding CRS1 / YhbY (CRM) domain-containing protein )

HSP 1 Score: 124.0 bits (310), Expect = 8.4e-29
Identity = 52/107 (48.60%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKLTRNGVYVNVVERVREAFE 60
           MLWKP AP+YP+L++ V +GL+ +E   MR +G    P+ KL +NGVY ++V+ V+EAFE
Sbjct: 341 MLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFE 400

Query: 61  FEDVVRLDCTHVGSSDCKQIGVKLRGLVPCVPILFKDEQIILWRGKK 108
             ++VR+DC  +  SD ++IG KL+ LVPCV + F++EQI++WRG++
Sbjct: 401 VCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGRE 447

[Close]

BLAST of Moc11g11460 vs. TAIR 10
Match: AT4G31010.2 (RNA-binding CRS1 / YhbY (CRM) domain-containing protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 1   MLWKPYAPIYPKLVKNVADGLSFEETKEMRSRGLNSPPLMKL 43
           MLWKP+ P+YP+L+K   DGLS +ETK MR +GL  P L KL
Sbjct: 259 MLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKL 300

The following BLAST results are available for this feature:

BLAST of Moc11g11460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139762.1	1.9e-67	100.00	CRS2-associated factor 2, mitochondrial [Momordica charantia]	[more]
XP_008454555.1	1.8e-57	93.91	PREDICTED: CRS2-associated factor 2, mitochondrial [Cucumis melo] >KAA0046461.1 ...	[more]
XP_038900170.1	3.4e-56	92.17	CRS2-associated factor 2, mitochondrial [Benincasa hispida]	[more]
XP_004151957.1	4.4e-56	92.17	CRS2-associated factor 2, mitochondrial [Cucumis sativus] >KGN57976.1 hypothetic...	[more]
XP_022936437.1	5.8e-56	93.04	CRS2-associated factor 2, mitochondrial [Cucurbita moschata]	[more]

BLAST of Moc11g11460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFU1	1.9e-49	79.65	CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g5...	[more]
Q0J7J7	2.7e-48	78.07	CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q5VMQ5	1.8e-31	55.24	CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q84N49	1.9e-30	55.24	CRS2-associated factor 1, chloroplastic OS=Zea mays OX=4577 GN=CAF1 PE=1 SV=1	[more]
Q9LDA9	9.7e-30	48.33	CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g2...	[more]

BLAST of Moc11g11460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CEV8	9.3e-68	100.00	CRS2-associated factor 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5D3BGH7	8.7e-58	93.91	CRS2-associated factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BYZ9	8.7e-58	93.91	CRS2-associated factor 2, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494948 ...	[more]
A0A0A0LD46	2.1e-56	92.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417680 PE=4 SV=1	[more]
A0A6J1F8G1	2.8e-56	93.04	CRS2-associated factor 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Moc11g11460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54890.1	1.3e-50	79.65	RNA-binding CRS1 / YhbY (CRM) domain-containing protein	[more]
AT1G23400.1	6.9e-31	48.33	RNA-binding CRS1 / YhbY (CRM) domain-containing protein	[more]
AT4G31010.1	1.5e-30	50.88	RNA-binding CRS1 / YhbY (CRM) domain-containing protein	[more]
AT2G20020.1	8.4e-29	48.60	RNA-binding CRS1 / YhbY (CRM) domain-containing protein	[more]
AT4G31010.2	1.5e-09	59.52	RNA-binding CRS1 / YhbY (CRM) domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	SMART	SM01103	CRS1_YhbY_2	coord: 21..104 e-value: 3.4E-10 score: 49.9
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 23..104 e-value: 2.8E-11 score: 43.4
IPR001890	RNA-binding, CRM domain	PROSITE	PS51295	CRM	coord: 19..115 score: 15.846394
IPR035920	YhbY-like superfamily	GENE3D	3.30.110.60		coord: 21..118 e-value: 5.4E-12 score: 47.6
IPR035920	YhbY-like superfamily	SUPERFAMILY	75471	YhbY-like	coord: 21..109
IPR044599	CRS2-associated factor, plant	PANTHER	PTHR46247	CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC	coord: 1..116
None	No IPR available	PANTHER	PTHR46247:SF4	CRS2-ASSOCIATED FACTOR 2, MITOCHONDRIAL	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g11460.1	Moc11g11460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000373	Group II intron splicing
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008033	tRNA processing
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016432	tRNA-uridine aminocarboxypropyltransferase activity