Moc11g08580 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g08580
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Pentatricopeptide repeat-containing protein
Location	chr11: 6097835 .. 6098519 (-)
RNA-Seq Expression	Moc11g08580
Synteny	Moc11g08580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTCTGCTCAATACAGTGTCTCCAATAGCAAACCCGTCACCAGAAACTTCAAGAAGAGGGTGTGGGTTCTTCTCCCACATCCCAAATCTCCACAAACTTTCACTCAACAAGGGATTTTCCAAAGTTTTAGCATCTACCCACATCACCATTTCCCCAAAGGACACCATTTTCACACTGCCAAATTGGAGGACTGGGAAGGTTGATCAGAAGAGCAGAGACCTCAGGCTCAATGATGCATTTCTCCACTTAGAGTTCATGGTGAGGAAGGGCCAAAAGCCAGATGTGTTTCAAGCCACTCAGCTGTTGTATGATCTGTGCAAGGCAAGCAAGATGAGGAAAGCCATTAAGGTGATGGAGATGATGATTGGGTCTGGAATCATTCCTGATGCATCTTCCTATACTTTTTTGGTAAGTTGTTTGTGTAAAAGAGGGAATGTTGGGTATGCAATGCAATTAGTGGACAAAATGGAGGAATATGGTTATCCTACAAACACTGTTACTTATAATTCACTTGTGAGAGGGCTGTGTATGCATGGAAATTTGAGCCAGAGTTTGCAGCTTTTAGACAGGTTAATCCACAAGGGGCTGGTCCCAAATGCTTACACTTACTCTTTTTTGCTTGAAGCAGCTTACAAGGAAAGAGGAGCTGATGAAGCCATTAAGCTTTTGGATGAGATAA

mRNA sequence

ATGGCGACTCTGCTCAATACAGTGTCTCCAATAGCAAACCCGTCACCAGAAACTTCAAGAAGAGGGTGTGGGTTCTTCTCCCACATCCCAAATCTCCACAAACTTTCACTCAACAAGGGATTTTCCAAAGTTTTAGCATCTACCCACATCACCATTTCCCCAAAGGACACCATTTTCACACTGCCAAATTGGAGGACTGGGAAGGTTGATCAGAAGAGCAGAGACCTCAGGCTCAATGATGCATTTCTCCACTTAGAGTTCATGGTGAGGAAGGGCCAAAAGCCAGATGTGTTTCAAGCCACTCAGCTGTTGTATGATCTGTGCAAGGCAAGCAAGATGAGGAAAGCCATTAAGGTGATGGAGATGATGATTGGGTCTGGAATCATTCCTGATGCATCTTCCTATACTTTTTTGCTTACAAGGAAAGAGGAGCTGATGAAGCCATTAAGCTTTTGGATGAGATAA

Coding sequence (CDS)

ATGGCGACTCTGCTCAATACAGTGTCTCCAATAGCAAACCCGTCACCAGAAACTTCAAGAAGAGGGTGTGGGTTCTTCTCCCACATCCCAAATCTCCACAAACTTTCACTCAACAAGGGATTTTCCAAAGTTTTAGCATCTACCCACATCACCATTTCCCCAAAGGACACCATTTTCACACTGCCAAATTGGAGGACTGGGAAGGTTGATCAGAAGAGCAGAGACCTCAGGCTCAATGATGCATTTCTCCACTTAGAGTTCATGGTGAGGAAGGGCCAAAAGCCAGATGTGTTTCAAGCCACTCAGCTGTTGTATGATCTGTGCAAGGCAAGCAAGATGAGGAAAGCCATTAAGGTGATGGAGATGATGATTGGGTCTGGAATCATTCCTGATGCATCTTCCTATACTTTTTTGCTTACAAGGAAAGAGGAGCTGATGAAGCCATTAAGCTTTTGGATGAGATAA

Protein sequence

MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFTLPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVMEMMIGSGIIPDASSYTFLLTRKEELMKPLSFWMR

Homology

[Close]

BLAST of Moc11g08580 vs. NCBI nr
Match: XP_022141778.1 (pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Momordica charantia])

HSP 1 Score: 281.6 bits (719), Expect = 4.2e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60
           MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT
Sbjct: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60

Query: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM 120
           LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM
Sbjct: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM 120

Query: 121 EMMIGSGIIPDASSYTFLLT 141
           EMMIGSGIIPDASSYTFL++
Sbjct: 121 EMMIGSGIIPDASSYTFLVS 140

[Close]

BLAST of Moc11g08580 vs. NCBI nr
Match: XP_038899825.1 (pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Benincasa hispida])

HSP 1 Score: 258.5 bits (659), Expect = 3.8e-65
Identity = 126/140 (90.00%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60
           MATLLNTVSPI NP PET+RRGCGFFSHIPNLHKLSL+KGFSKVLAST ITISPKDTIFT
Sbjct: 1   MATLLNTVSPITNPLPETTRRGCGFFSHIPNLHKLSLSKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM 120
           LPNWRT K DQKSR+LRLNDAF HLEF+V KGQKPDVFQATQLLYDLCKA KMRKAIKVM
Sbjct: 61  LPNWRTAKGDQKSRELRLNDAFFHLEFLVEKGQKPDVFQATQLLYDLCKACKMRKAIKVM 120

Query: 121 EMMIGSGIIPDASSYTFLLT 141
           EMMIGSGIIPDASSYTFL++
Sbjct: 121 EMMIGSGIIPDASSYTFLVS 140

[Close]

BLAST of Moc11g08580 vs. NCBI nr
Match: XP_011653982.1 (pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucumis sativus] >KGN54942.1 hypothetical protein Csa_012601 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 1.4e-64
Identity = 123/140 (87.86%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60
           MATLLNTVSPI NPSPET+RRGCGFFSHIPN+ KLSLNKGFSKVLAST ITISPKDTIFT
Sbjct: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM 120
           LPNW+ GK+DQKS++LRLNDAF HLEFMV KGQKPDVFQATQLLYDLCK  KMRKAIKVM
Sbjct: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVM 120

Query: 121 EMMIGSGIIPDASSYTFLLT 141
           EMMIGSGIIPDA+SYTFL++
Sbjct: 121 EMMIGSGIIPDAASYTFLVS 140

[Close]

BLAST of Moc11g08580 vs. NCBI nr
Match: XP_008444287.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucumis melo] >ADN33755.1 pentatricopeptide repeat-containing protein [Cucumis melo subsp. melo] >KAA0052323.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK01883.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.5 bits (654), Expect = 1.4e-64
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60
           MATLLNTVSPI N SPET+RRGCGFFSHIPNL KLSLNKGFSKVLAST ITISPKDTIFT
Sbjct: 1   MATLLNTVSPITNTSPETTRRGCGFFSHIPNLQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM 120
           LPNW+TGKV+QKS++LRL DAF HLEFMV KGQKPDVFQATQLLYDLCKA KMRKAIKVM
Sbjct: 61  LPNWKTGKVEQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCKACKMRKAIKVM 120

Query: 121 EMMIGSGIIPDASSYTFLLT 141
           EMMIGSGIIPDASSYTFL++
Sbjct: 121 EMMIGSGIIPDASSYTFLVS 140

[Close]

BLAST of Moc11g08580 vs. NCBI nr
Match: XP_023525084.1 (pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 3.0e-62
Identity = 121/140 (86.43%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60
           MATLLNTVSPI NPSPET+RRG GFFSHIPNLHKLSL+KGFSKVLAST +TISPKDTIFT
Sbjct: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60

Query: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM 120
           LPNWR GK DQK+R+ RLNDAFL+LE++V KGQKPDVFQATQLLYDLCKASK+R+AIKVM
Sbjct: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKASKLRRAIKVM 120

Query: 121 EMMIGSGIIPDASSYTFLLT 141
           EMMIGSGIIPDASSYTFL++
Sbjct: 121 EMMIGSGIIPDASSYTFLVS 140

[Close]

BLAST of Moc11g08580 vs. ExPASy Swiss-Prot
Match: A3KPF8 (Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g79080 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-32
Identity = 75/151 (49.67%), Postives = 110/151 (72.85%), Query Frame = 0


Query: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPN--LHKLSLNKGFSKVLASTHITISPKDTI 60
           M+TLLN+V  +A+P   + R+  GF SHIP+  LH  S++KG ++VLAST IT+SPKD+ 
Sbjct: 1   MSTLLNSVLSMASPE-SSPRKAVGFVSHIPSGFLHFSSVSKGVARVLASTQITLSPKDSA 60

Query: 61  FTL------PNWRTGKV--DQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKA 120
           FT+      P+  +G    D +S +  L+D+F HLE +V  G KP+V  +TQLLYDLCKA
Sbjct: 61  FTITGSSWKPDLDSGSFSDDPRSDEPNLSDSFSHLESLVTGGHKPNVAHSTQLLYDLCKA 120

Query: 121 SKMRKAIKVMEMMIGSGIIPDASSYTFLLTR 142
           ++++KAI+V+E+M+ SGIIPDAS+YT+L+ +
Sbjct: 121 NRLKKAIRVIELMVSSGIIPDASAYTYLVNQ 150

[Close]

BLAST of Moc11g08580 vs. ExPASy Swiss-Prot
Match: Q3EDF8 (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX=3702 GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 33/106 (31.13%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 36  SLNKGFSKVLASTHITISPKDTIFTLPNWRTGK-VDQKSRDLRLNDAFLHLEFMVRKGQK 95
           +L+ G+S    + H   S  ++ F L +  +   + Q  R   L + F  LE MV  G  
Sbjct: 77  TLSSGYSNSNGNGH--YSSVNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNV 136

Query: 96  PDVFQATQLLYDLCKASKMRKAIKVMEMMIGSGIIPDASSYTFLLT 141
           PD+   T L+   C+  K RKA K++E++ GSG +PD  +Y  +++
Sbjct: 137 PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMIS 180

[Close]

BLAST of Moc11g08580 vs. ExPASy Swiss-Prot
Match: Q3EAF8 (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-05
Identity = 26/67 (38.81%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 74  RDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVMEMMIGSGIIPDAS 133
           R ++ +DA      M  KG  P+V   T ++ D CK S M  AI+  + M+ SG+ PDA+
Sbjct: 345 RSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAA 404

Query: 134 SYTFLLT 141
            YT L+T
Sbjct: 405 VYTCLIT 411

[Close]

BLAST of Moc11g08580 vs. ExPASy Swiss-Prot
Match: Q9LEQ7 (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-05
Identity = 26/67 (38.81%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 74  RDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVMEMMIGSGIIPDAS 133
           R ++ +DA      M  KG  P+V   T ++ D CK S M  AI+  + M+ SG+ PDA+
Sbjct: 344 RSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAA 403

Query: 134 SYTFLLT 141
            YT L+T
Sbjct: 404 VYTCLIT 410

[Close]

BLAST of Moc11g08580 vs. ExPASy Swiss-Prot
Match: Q9LZP3 (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.6e-05
Identity = 26/67 (38.81%), Postives = 37/67 (55.22%), Query Frame = 0


Query: 74  RDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVMEMMIGSGIIPDAS 133
           R  + +DA      M  KG  P+V   T ++ D CK S M  AI+  + M+ SG+ PDA+
Sbjct: 345 RSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAA 404

Query: 134 SYTFLLT 141
            YT L+T
Sbjct: 405 VYTCLIT 411

[Close]

BLAST of Moc11g08580 vs. ExPASy TrEMBL
Match: A0A6J1CLJ3 (pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012056 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.0e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60
           MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT
Sbjct: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60

Query: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM 120
           LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM
Sbjct: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM 120

Query: 121 EMMIGSGIIPDASSYTFLLT 141
           EMMIGSGIIPDASSYTFL++
Sbjct: 121 EMMIGSGIIPDASSYTFLVS 140

[Close]

BLAST of Moc11g08580 vs. ExPASy TrEMBL
Match: A0A5A7U8T1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001460 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.9e-65
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60
           MATLLNTVSPI N SPET+RRGCGFFSHIPNL KLSLNKGFSKVLAST ITISPKDTIFT
Sbjct: 1   MATLLNTVSPITNTSPETTRRGCGFFSHIPNLQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM 120
           LPNW+TGKV+QKS++LRL DAF HLEFMV KGQKPDVFQATQLLYDLCKA KMRKAIKVM
Sbjct: 61  LPNWKTGKVEQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCKACKMRKAIKVM 120

Query: 121 EMMIGSGIIPDASSYTFLLT 141
           EMMIGSGIIPDASSYTFL++
Sbjct: 121 EMMIGSGIIPDASSYTFLVS 140

[Close]

BLAST of Moc11g08580 vs. ExPASy TrEMBL
Match: E5GBB3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.9e-65
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60
           MATLLNTVSPI N SPET+RRGCGFFSHIPNL KLSLNKGFSKVLAST ITISPKDTIFT
Sbjct: 1   MATLLNTVSPITNTSPETTRRGCGFFSHIPNLQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM 120
           LPNW+TGKV+QKS++LRL DAF HLEFMV KGQKPDVFQATQLLYDLCKA KMRKAIKVM
Sbjct: 61  LPNWKTGKVEQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCKACKMRKAIKVM 120

Query: 121 EMMIGSGIIPDASSYTFLLT 141
           EMMIGSGIIPDASSYTFL++
Sbjct: 121 EMMIGSGIIPDASSYTFLVS 140

[Close]

BLAST of Moc11g08580 vs. ExPASy TrEMBL
Match: A0A0A0L2W8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G613170 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.9e-65
Identity = 123/140 (87.86%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60
           MATLLNTVSPI NPSPET+RRGCGFFSHIPN+ KLSLNKGFSKVLAST ITISPKDTIFT
Sbjct: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM 120
           LPNW+ GK+DQKS++LRLNDAF HLEFMV KGQKPDVFQATQLLYDLCK  KMRKAIKVM
Sbjct: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVM 120

Query: 121 EMMIGSGIIPDASSYTFLLT 141
           EMMIGSGIIPDA+SYTFL++
Sbjct: 121 EMMIGSGIIPDAASYTFLVS 140

[Close]

BLAST of Moc11g08580 vs. ExPASy TrEMBL
Match: A0A1S3BA04 (pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487653 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.9e-65
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60
           MATLLNTVSPI N SPET+RRGCGFFSHIPNL KLSLNKGFSKVLAST ITISPKDTIFT
Sbjct: 1   MATLLNTVSPITNTSPETTRRGCGFFSHIPNLQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVM 120
           LPNW+TGKV+QKS++LRL DAF HLEFMV KGQKPDVFQATQLLYDLCKA KMRKAIKVM
Sbjct: 61  LPNWKTGKVEQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCKACKMRKAIKVM 120

Query: 121 EMMIGSGIIPDASSYTFLLT 141
           EMMIGSGIIPDASSYTFL++
Sbjct: 121 EMMIGSGIIPDASSYTFLVS 140

[Close]

BLAST of Moc11g08580 vs. TAIR 10
Match: AT1G79080.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 141.0 bits (354), Expect = 8.2e-34
Identity = 75/151 (49.67%), Postives = 110/151 (72.85%), Query Frame = 0


Query: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPN--LHKLSLNKGFSKVLASTHITISPKDTI 60
           M+TLLN+V  +A+P   + R+  GF SHIP+  LH  S++KG ++VLAST IT+SPKD+ 
Sbjct: 1   MSTLLNSVLSMASPE-SSPRKAVGFVSHIPSGFLHFSSVSKGVARVLASTQITLSPKDSA 60

Query: 61  FTL------PNWRTGKV--DQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKA 120
           FT+      P+  +G    D +S +  L+D+F HLE +V  G KP+V  +TQLLYDLCKA
Sbjct: 61  FTITGSSWKPDLDSGSFSDDPRSDEPNLSDSFSHLESLVTGGHKPNVAHSTQLLYDLCKA 120

Query: 121 SKMRKAIKVMEMMIGSGIIPDASSYTFLLTR 142
           ++++KAI+V+E+M+ SGIIPDAS+YT+L+ +
Sbjct: 121 NRLKKAIRVIELMVSSGIIPDASAYTYLVNQ 150

[Close]

BLAST of Moc11g08580 vs. TAIR 10
Match: AT1G09900.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 9.1e-09
Identity = 33/106 (31.13%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 36  SLNKGFSKVLASTHITISPKDTIFTLPNWRTGK-VDQKSRDLRLNDAFLHLEFMVRKGQK 95
           +L+ G+S    + H   S  ++ F L +  +   + Q  R   L + F  LE MV  G  
Sbjct: 77  TLSSGYSNSNGNGH--YSSVNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNV 136

Query: 96  PDVFQATQLLYDLCKASKMRKAIKVMEMMIGSGIIPDASSYTFLLT 141
           PD+   T L+   C+  K RKA K++E++ GSG +PD  +Y  +++
Sbjct: 137 PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMIS 180

[Close]

BLAST of Moc11g08580 vs. TAIR 10
Match: AT3G62540.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 26/67 (38.81%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 74  RDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVMEMMIGSGIIPDAS 133
           R ++ +DA      M  KG  P+V   T ++ D CK S M  AI+  + M+ SG+ PDA+
Sbjct: 345 RSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAA 404

Query: 134 SYTFLLT 141
            YT L+T
Sbjct: 405 VYTCLIT 411

[Close]

BLAST of Moc11g08580 vs. TAIR 10
Match: AT5G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 26/67 (38.81%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 74  RDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVMEMMIGSGIIPDAS 133
           R ++ +DA      M  KG  P+V   T ++ D CK S M  AI+  + M+ SG+ PDA+
Sbjct: 344 RSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAA 403

Query: 134 SYTFLLT 141
            YT L+T
Sbjct: 404 VYTCLIT 410

[Close]

BLAST of Moc11g08580 vs. TAIR 10
Match: AT3G62470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.2e-06
Identity = 26/67 (38.81%), Postives = 37/67 (55.22%), Query Frame = 0


Query: 74  RDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKASKMRKAIKVMEMMIGSGIIPDAS 133
           R  + +DA      M  KG  P+V   T ++ D CK S M  AI+  + M+ SG+ PDA+
Sbjct: 345 RSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAA 404

Query: 134 SYTFLLT 141
            YT L+T
Sbjct: 405 VYTCLIT 411

The following BLAST results are available for this feature:

BLAST of Moc11g08580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141778.1	4.2e-72	98.57	pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Momordica ...	[more]
XP_038899825.1	3.8e-65	90.00	pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Benincasa ...	[more]
XP_011653982.1	1.4e-64	87.86	pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucumis sa...	[more]
XP_008444287.1	1.4e-64	89.29	PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic ...	[more]
XP_023525084.1	3.0e-62	86.43	pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like [Cucur...	[more]

BLAST of Moc11g08580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A3KPF8	1.2e-32	49.67	Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidop...	[more]
Q3EDF8	1.3e-07	31.13	Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX...	[more]
Q3EAF8	1.6e-05	38.81	Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidop...	[more]
Q9LEQ7	1.6e-05	38.81	Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidop...	[more]
Q9LZP3	4.6e-05	38.81	Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidop...	[more]

BLAST of Moc11g08580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CLJ3	2.0e-72	98.57	pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Momordic...	[more]
A0A5A7U8T1	6.9e-65	89.29	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
E5GBB3	6.9e-65	89.29	Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo OX=41267...	[more]
A0A0A0L2W8	6.9e-65	87.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G613170 PE=4 SV=1	[more]
A0A1S3BA04	6.9e-65	89.29	pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Cucumis ...	[more]

BLAST of Moc11g08580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79080.1	8.2e-34	49.67	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G09900.1	9.1e-09	31.13	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G62540.1	1.1e-06	38.81	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G14820.1	1.1e-06	38.81	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G62470.1	3.2e-06	38.81	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 107..132 e-value: 1.6E-4 score: 19.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 96..130 score: 8.988323
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 60..141 e-value: 3.1E-10 score: 41.9
None	No IPR available	PANTHER	PTHR45613:SF297	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 1..140
None	No IPR available	PANTHER	PTHR45613	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g08580.1	Moc11g08580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding