Moc11g08450 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g08450
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	At4g19430
Location	chr11: 6007290 .. 6008377 (-)
RNA-Seq Expression	Moc11g08450
Synteny	Moc11g08450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGTGAGCTTGGAGATGGCAAAGGAAAAAGAAGAAAAAGAAGAAAGAAGACTCAATTCGGGGCTGTTTTTCAGTTGAATTTGTGGTACTTTGCTTCAACAATCAGCCATATCTTAAGGAAGGCCAAAGCCTTCTACAATGAGTGTTGCTGTGATGCCTATGAGGATGGGAAGATTGTTGAAGTTACTTTGGTTGATCCTTATTTCTCAATGCCTGCTTTGCCTTGTACTTCTTATTCTATGGCTAATTGTATGTAAATGAGTGATGGAACTAATGTGATCTCTCTTTCTATCGAGTTATATATGTCTAGACTCGAGAATCATTATGATTTAGTGGGCAAAAATCGTTGACATTATTGTACACTTAAATTTTTGTAAGTGAAAAAATTAGACCCCTATATATTGGAAAATTGCACCCATAAATTTTTAATGCTAAAAATAAAACTCTTCAAACATTTAAAAAAATGAGATATATTATGTAAATGCTAAAAAAATTAGCTAATTCAATCAACATTCCCTCCTTTCTCTACTTCATCGAAGATTGAAAATTTACAGGGTTCAACTCAATTTTATTAAGACGTAATTGAAGAGTTTCAAAGGATTATTTGTGACATCGGAAGCTTGCAACCGAGCGATTTCCATATTTGCGGCAGCTGCTTTGGAACAAATAGAGAGGGATTTTGGGCAAATCTTCGAAGGGGAAAGGGGAGTAGAAAAGAAACTGGGAGAATGAGAAATGACACAGACGGGGAGAGAACAATCGGCATTTGAGTGGAATAATTTTTTTTTCTTTTCTTTTTAACTTGGGGGTTTATTTATTTAGGGTATAATGTTTTCACTTATAAAAATTTGAGAGTTTAATTTTTACCATTAGTGTAATTGCAACAACACCCAAGATAGCTTTTGCAATTTAAAAGAAAAAAAAAACAAGAAGAAGAAGAAGAAGAACCCGAGCAAATATTTTTTCGATCGCCCCAATCGGACAGCTGTGATTCTGCAGCCGTAGCGGTTACGCGTCTCAGAAGACATGCTTCAGCGGTTGGACCGAACCAGGCGATGACGATTTTCTTCATCGTGGTGGGTGA

mRNA sequence

ATGGTGAGTGAGCTTGGAGATGGCAAAGGAAAAAGAAGAAAAAGAAGAAAGAAGACTCAATTCGGGGCTGTTTTTCAGTTGAATTTGTGGTACTTTGCTTCAACAATCAGCCATATCTTAAGGAAGGCCAAAGCCTTCTACAATGAGTGTTGCTGTGATGCCTATGAGGATGGGAAGATTGTTGAAGTTACTTTGGTTGATCCTTATTTCTCAATGCCTGCTTTGCCTTGTACTTCTTATTCTATGGCTAATTGTATCCGTAGCGGTTACGCGTCTCAGAAGACATGCTTCAGCGGTTGGACCGAACCAGGCGATGACGATTTTCTTCATCGTGGTGGGTGA

Coding sequence (CDS)

ATGGTGAGTGAGCTTGGAGATGGCAAAGGAAAAAGAAGAAAAAGAAGAAAGAAGACTCAATTCGGGGCTGTTTTTCAGTTGAATTTGTGGTACTTTGCTTCAACAATCAGCCATATCTTAAGGAAGGCCAAAGCCTTCTACAATGAGTGTTGCTGTGATGCCTATGAGGATGGGAAGATTGTTGAAGTTACTTTGGTTGATCCTTATTTCTCAATGCCTGCTTTGCCTTGTACTTCTTATTCTATGGCTAATTGTATCCGTAGCGGTTACGCGTCTCAGAAGACATGCTTCAGCGGTTGGACCGAACCAGGCGATGACGATTTTCTTCATCGTGGTGGGTGA

Protein sequence

MVSELGDGKGKRRKRRKKTQFGAVFQLNLWYFASTISHILRKAKAFYNECCCDAYEDGKIVEVTLVDPYFSMPALPCTSYSMANCIRSGYASQKTCFSGWTEPGDDDFLHRGG

Homology

[Close]

BLAST of Moc11g08450 vs. NCBI nr
Match: KAG6608012.1 (hypothetical protein SDJN03_01354, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.5 bits (293), Expect = 7.6e-23
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 6   GDGKGKRR-----KRRKKTQFGA---VFQLNLWYFASTISHILRKAKAFYNECCCDAYED 65
           GDGKG+RR     +RRK TQFGA   V Q N+WYF STIS+ILRKAKAFYNECCCDAYED
Sbjct: 48  GDGKGRRREKKQGRRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYED 107

Query: 66  GKI--VEVTLVDPYFSMPALPCTSYSMANCI 87
            ++  VEV +VDPYFSMP  P T  +MANC+
Sbjct: 108 ERMKRVEVAMVDPYFSMPVFPYT--TMANCM 136

[Close]

BLAST of Moc11g08450 vs. NCBI nr
Match: XP_022940822.1 (uncharacterized protein LOC111446301 [Cucurbita moschata])

HSP 1 Score: 117.5 bits (293), Expect = 7.6e-23
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 6   GDGKGKRR-----KRRKKTQFGA---VFQLNLWYFASTISHILRKAKAFYNECCCDAYED 65
           GDGKG+RR     +RRK TQFGA   V Q N+WYF STIS+ILRKAKAFYNECCCDAYED
Sbjct: 48  GDGKGRRRVKKQGRRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYED 107

Query: 66  GKI--VEVTLVDPYFSMPALPCTSYSMANCI 87
            ++  VEV +VDPYFSMP  P T  +MANC+
Sbjct: 108 ERMKRVEVAMVDPYFSMPVFPYT--TMANCM 136

[Close]

BLAST of Moc11g08450 vs. NCBI nr
Match: TYK01842.1 (hypothetical protein E5676_scaffold113G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 3   SELGDGKG-KRRKRRKKTQFGA---VFQLNLWYFASTISHILRKAKAFYNECCCDAYEDG 62
           +E GD KG +RR+RRKK QFG    V  +N WYF STISHILRKAKAFYNECCCDAYED 
Sbjct: 43  AEHGDSKGRRRRRRRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAYEDE 102

Query: 63  KIVEVTLVDPYFSMPALPCTSYSMANCI 87
           ++ +   +DPYFSMP LP T  +MANC+
Sbjct: 103 RMFQ--SIDPYFSMPVLPYT--TMANCL 126

[Close]

BLAST of Moc11g08450 vs. NCBI nr
Match: KAA0052276.1 (hypothetical protein E6C27_scaffold207G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 3   SELGDGKG-KRRKRRKKTQFGA---VFQLNLWYFASTISHILRKAKAFYNECCCDAYEDG 62
           +E GD KG +RR+RRKK QFG    V  +N WYF STISHILRKAKAFYNECCCDAYED 
Sbjct: 43  AEHGDSKGRRRRRRRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAYEDE 102

Query: 63  KIVEVTLVDPYFSMPALPCTSYSMANCI 87
           ++ +   +DPYFSMP LP T  +MANC+
Sbjct: 103 RMFQ--SIDPYFSMPVLPYT--TMANCL 126

[Close]

BLAST of Moc11g08450 vs. NCBI nr
Match: KGN55571.1 (hypothetical protein Csa_012627 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 4.2e-21
Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 4   ELGDGKG-KRRKRRKKTQFGA---VFQLNLWYFASTISHILRKAKAFYNECCCDAYEDGK 63
           E G+ KG +RRKRRKK QFG    V  +N WYF STISHILRKAKAFYNECCCDA+ED +
Sbjct: 44  EHGESKGRRRRKRRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDER 103

Query: 64  IV--EVTLVDPYFSMPALPCTSYSMANCI 87
           +   EV  +DPYFSMP LP T  +MANC+
Sbjct: 104 MKKNEVISIDPYFSMPVLPYT--TMANCM 130

[Close]

BLAST of Moc11g08450 vs. ExPASy TrEMBL
Match: A0A6J1FKP2 (uncharacterized protein LOC111446301 OS=Cucurbita moschata OX=3662 GN=LOC111446301 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.7e-23
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 6   GDGKGKRR-----KRRKKTQFGA---VFQLNLWYFASTISHILRKAKAFYNECCCDAYED 65
           GDGKG+RR     +RRK TQFGA   V Q N+WYF STIS+ILRKAKAFYNECCCDAYED
Sbjct: 48  GDGKGRRRVKKQGRRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYED 107

Query: 66  GKI--VEVTLVDPYFSMPALPCTSYSMANCI 87
            ++  VEV +VDPYFSMP  P T  +MANC+
Sbjct: 108 ERMKRVEVAMVDPYFSMPVFPYT--TMANCM 136

[Close]

BLAST of Moc11g08450 vs. ExPASy TrEMBL
Match: A0A5A7UDK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001040 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 3   SELGDGKG-KRRKRRKKTQFGA---VFQLNLWYFASTISHILRKAKAFYNECCCDAYEDG 62
           +E GD KG +RR+RRKK QFG    V  +N WYF STISHILRKAKAFYNECCCDAYED 
Sbjct: 43  AEHGDSKGRRRRRRRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAYEDE 102

Query: 63  KIVEVTLVDPYFSMPALPCTSYSMANCI 87
           ++ +   +DPYFSMP LP T  +MANC+
Sbjct: 103 RMFQ--SIDPYFSMPVLPYT--TMANCL 126

[Close]

BLAST of Moc11g08450 vs. ExPASy TrEMBL
Match: A0A5D3BSQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00900 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 3   SELGDGKG-KRRKRRKKTQFGA---VFQLNLWYFASTISHILRKAKAFYNECCCDAYEDG 62
           +E GD KG +RR+RRKK QFG    V  +N WYF STISHILRKAKAFYNECCCDAYED 
Sbjct: 43  AEHGDSKGRRRRRRRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAYEDE 102

Query: 63  KIVEVTLVDPYFSMPALPCTSYSMANCI 87
           ++ +   +DPYFSMP LP T  +MANC+
Sbjct: 103 RMFQ--SIDPYFSMPVLPYT--TMANCL 126

[Close]

BLAST of Moc11g08450 vs. ExPASy TrEMBL
Match: A0A0A0L609 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669230 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 4   ELGDGKG-KRRKRRKKTQFGA---VFQLNLWYFASTISHILRKAKAFYNECCCDAYEDGK 63
           E G+ KG +RRKRRKK QFG    V  +N WYF STISHILRKAKAFYNECCCDA+ED +
Sbjct: 44  EHGESKGRRRRKRRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDER 103

Query: 64  IV--EVTLVDPYFSMPALPCTSYSMANCI 87
           +   EV  +DPYFSMP LP T  +MANC+
Sbjct: 104 MKKNEVISIDPYFSMPVLPYT--TMANCM 130

[Close]

BLAST of Moc11g08450 vs. ExPASy TrEMBL
Match: A0A1Q3D8H6 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_32173 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.2e-11
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 11  KRRKRRKKTQFGAVF--QLNLWYFASTISHILRKAKAFYNECCCDAYEDGKIV--EVTLV 70
           K   R+KK    A+   +L +WY  S+IS+ILRKAKAFYNECCCDA+ED  ++  +VTLV
Sbjct: 40  KYMPRKKKPGHWALQFPRLGIWYMTSSISYILRKAKAFYNECCCDAFEDPVLMGKQVTLV 99

Query: 71  DPYFSMPALP 77
           D YFS P +P
Sbjct: 100 DSYFSTPVVP 109

[Close]

BLAST of Moc11g08450 vs. TAIR 10
Match: AT4G19430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 29  LWYFASTISHILRKAKAFYNECCCDAYEDGKIVEVTLVDPYFSMPAL 76
           LWY   +ISHILRKA+AFYNE CCD Y +   + V  V+PYFS+P +
Sbjct: 115 LWYMKCSISHILRKARAFYNEFCCDTYAESNTMAV--VEPYFSIPVI 159

The following BLAST results are available for this feature:

BLAST of Moc11g08450 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608012.1	7.6e-23	67.03	hypothetical protein SDJN03_01354, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022940822.1	7.6e-23	67.03	uncharacterized protein LOC111446301 [Cucurbita moschata]	[more]
TYK01842.1	2.5e-21	64.77	hypothetical protein E5676_scaffold113G00900 [Cucumis melo var. makuwa]	[more]
KAA0052276.1	2.5e-21	64.77	hypothetical protein E6C27_scaffold207G001040 [Cucumis melo var. makuwa]	[more]
KGN55571.1	4.2e-21	65.17	hypothetical protein Csa_012627 [Cucumis sativus]	[more]

BLAST of Moc11g08450 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g08450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FKP2	3.7e-23	67.03	uncharacterized protein LOC111446301 OS=Cucurbita moschata OX=3662 GN=LOC1114463...	[more]
A0A5A7UDK1	1.2e-21	64.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BSQ8	1.2e-21	64.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L609	2.0e-21	65.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669230 PE=4 SV=1	[more]
A0A1Q3D8H6	4.2e-11	55.71	Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3...	[more]

BLAST of Moc11g08450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19430.1	1.6e-10	57.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g08450.1	Moc11g08450.1	mRNA