Moc11g07030 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g07030
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Rhamnogalacturonan endolyase
Location	chr11: 4840421 .. 4841722 (-)
RNA-Seq Expression	Moc11g07030
Synteny	Moc11g07030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAAAAAGTCGAGACACAACATGAAAAACAGCACCGTTTTTTCCCCCTCAAATTTATCTGCGCCTCTCACTTTTTTTTGCCTCTGCTGTTCTGTTTTGTTTTACTTTCACGCGCCCTTCATCTCTGCAACAACACAACCAGAAGCTTCACGGCGGCCGTCTACCGCCGCCGCCGGCGGTGGGCTTGGCCTCGACGTCTCGGCGCCTCCGCTGCAACTCCGCATTCACGACCAACATGTAATTTCGCTCAACTCTATGCTCTCTAATGCTTTAGTTTTAAAAATTATGAAAATAGTCCCGCATTTAGCTAGAAATTAATAAAATCGAAATATTTCGATTAGTATGAGTTCGAATAATTAATAACATATTATTTGTATTGGTAGATTGTAATGGACAATGGCATAACAGGGGTAACATTGTCAAACCCAGAAGGATTCGTCACCGGAATACGATACAATGGGATCGAAAACTTGCTTGAGGTTGGCAATGCTGAATATAACAGAGGGTAATTAACTCTAATTTTCAAAGTTGTTAAAGATTATCTGGTAACTTCTTTTTTTTTTTTTTTTAATTTTCGGGAAAACTTAGTCAAAGTTTTAAAAGAATAAATTTATTTTTAAAAGTTTATTCAGAATTAAAACTGCTTTTATTTTAATGAGAAAAGAGGTTCATTACAAAAAAGAAAACAGATTATATACAACAACTCATATTAACTTAATTTACTTATCATTTTCACTTATTAAAAAAAACTCGTGTAAATTTTTGGGGTGAAATTGCAGATATTGGGACATTGTTTGGAATGTCGCAGGAAGTTCGGGAACCAAGGGCATTTTTGATCGGTAAGGCTCTTTTTTTTTGTTGCCATTTTCGAGCTGAAAATTCCACTTCTTACTTACTTTCTGTTGTTCATAAATCAAAATTTGAAGTACTTGATTTTTGTCAATGCAGAATAGAAGGAACAGATTTCAAGGTAATTGTGGAAAATGATGAACAAATAGAGCTCTCATTCACCAGAACTTACAATTCATCCACCGGAGCCAATCTCGTTCCCTTGAACATCGACAAAAGGTAACCAAACATAAAAAAAATCTCGAAAAAAGGGAAAAAACGCTCAGAAATTGTAAGCAATTATCAAGACAATGAACGATTAAGGGCGAAATCTTGTTGTTCTCCAGGTTCGTGATGCTCCGCGGTTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAGAGAATGGCCTGCGTTTGACTTTGACAACACGAGAATCGTATTCAAGCTCAGAAAAGACAAGTAA

mRNA sequence

ATGTCAAAAAAGTCGAGACACAACATGAAAAACAGCACCGTTTTTTCCCCCTCAAATTTATCTGCGCCTCTCACTTTTTTTTGCCTCTGCTGTTCTGTTTTGTTTTACTTTCACGCGCCCTTCATCTCTGCAACAACACAACCAGAAGCTTCACGGCGGCCGTCTACCGCCGCCGCCGGCGGTGGGCTTGGCCTCGACGTCTCGGCGCCTCCGCTGCAACTCCGCATTCACGACCAACATATTGTAATGGACAATGGCATAACAGGGGTAACATTGTCAAACCCAGAAGGATTCGTCACCGGAATACGATACAATGGGATCGAAAACTTGCTTGAGGTTGGCAATGCTGAATATAACAGAGGATATTGGGACATTGTTTGGAATGTCGCAGGAAGTTCGGGAACCAAGGGCATTTTTGATCGAATAGAAGGAACAGATTTCAAGGTAATTGTGGAAAATGATGAACAAATAGAGCTCTCATTCACCAGAACTTACAATTCATCCACCGGAGCCAATCTCGTTCCCTTGAACATCGACAAAAGGTTCGTGATGCTCCGCGGTTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAGAGAATGGCCTGCGTTTGACTTTGACAACACGAGAATCGTATTCAAGCTCAGAAAAGACAAGTAA

Coding sequence (CDS)

ATGTCAAAAAAGTCGAGACACAACATGAAAAACAGCACCGTTTTTTCCCCCTCAAATTTATCTGCGCCTCTCACTTTTTTTTGCCTCTGCTGTTCTGTTTTGTTTTACTTTCACGCGCCCTTCATCTCTGCAACAACACAACCAGAAGCTTCACGGCGGCCGTCTACCGCCGCCGCCGGCGGTGGGCTTGGCCTCGACGTCTCGGCGCCTCCGCTGCAACTCCGCATTCACGACCAACATATTGTAATGGACAATGGCATAACAGGGGTAACATTGTCAAACCCAGAAGGATTCGTCACCGGAATACGATACAATGGGATCGAAAACTTGCTTGAGGTTGGCAATGCTGAATATAACAGAGGATATTGGGACATTGTTTGGAATGTCGCAGGAAGTTCGGGAACCAAGGGCATTTTTGATCGAATAGAAGGAACAGATTTCAAGGTAATTGTGGAAAATGATGAACAAATAGAGCTCTCATTCACCAGAACTTACAATTCATCCACCGGAGCCAATCTCGTTCCCTTGAACATCGACAAAAGGTTCGTGATGCTCCGCGGTTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAGAGAATGGCCTGCGTTTGACTTTGACAACACGAGAATCGTATTCAAGCTCAGAAAAGACAAGTAA

Protein sequence

MSKKSRHNMKNSTVFSPSNLSAPLTFFCLCCSVLFYFHAPFISATTQPEASRRPSTAAAGGGLGLDVSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNRGYWDIVWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDKRFVMLRGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK

Homology

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BLAST of Moc11g07030 vs. NCBI nr
Match: XP_022138135.1 (uncharacterized protein LOC111009378 [Momordica charantia])

HSP 1 Score: 453.4 bits (1165), Expect = 1.1e-123
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MSKKSRHNMKNSTVFSPSNLSAPLTFFCLCCSVLFYFHAPFISATTQPEASRRPSTAAAG 60
           MSKKSRHNMKNSTVFSPSNLSAPLTFFCLCCSVLFYFHAPFISATTQPEASRRPSTAAAG
Sbjct: 1   MSKKSRHNMKNSTVFSPSNLSAPLTFFCLCCSVLFYFHAPFISATTQPEASRRPSTAAAG 60

Query: 61  GGLGLDVSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNR 120
           GGLGLDVSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNR
Sbjct: 61  GGLGLDVSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNR 120

Query: 121 GYWDIVWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDK 180
           GYWDIVWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDK
Sbjct: 121 GYWDIVWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDK 180

Query: 181 RFVMLRGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 222
           RFVMLRGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK
Sbjct: 181 RFVMLRGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 221

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BLAST of Moc11g07030 vs. NCBI nr
Match: XP_023522509.1 (probable rhamnogalacturonate lyase B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 3.4e-67
Identity = 139/225 (61.78%), Postives = 164/225 (72.89%), Query Frame = 0


Query: 9   MKNSTVFSPSNLSAPLTFFCLCCSVLFYFHAPFISATTQ-PEASRRPSTAAAG------- 68
           MK S  FS S+LS  L  F L  S+ FY + PFI  TT+ P  S  P T   G       
Sbjct: 1   MKKS-AFSLSSLSDSLKIFWLFSSLFFYVYGPFIPTTTRDPVVSTTPDTDGHGPDAHGPD 60

Query: 69  ----GGLGLDVSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNA 128
                G   +VS   LQL I +Q++VM+N I  VT+SNP GFVTGI Y+GIENLL+V N 
Sbjct: 61  GHSPDGHSPNVSVSLLQLHIQEQYVVMENEIIAVTISNPMGFVTGIEYHGIENLLDVTNP 120

Query: 129 EYNRGYWDIVWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPL 188
           E +RGYWD+VWN AG+ GTKG+FDRIE TDFKVIV+NDEQIELSF+RTYNSS+G ++VPL
Sbjct: 121 EDDRGYWDVVWNTAGAKGTKGMFDRIEATDFKVIVQNDEQIELSFSRTYNSSSGDDVVPL 180

Query: 189 NIDKRFVMLRGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 222
           N+DKRFV+LR SSGFYSYAIYEHL+EWPAF+ DNTRI FK RKDK
Sbjct: 181 NVDKRFVILRNSSGFYSYAIYEHLKEWPAFNIDNTRIAFKPRKDK 224

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BLAST of Moc11g07030 vs. NCBI nr
Match: XP_022980944.1 (probable rhamnogalacturonate lyase B isoform X1 [Cucurbita maxima])

HSP 1 Score: 265.8 bits (678), Expect = 3.4e-67
Identity = 136/215 (63.26%), Postives = 160/215 (74.42%), Query Frame = 0


Query: 15  FSPSNLSAPLTFFCLCCSVLFYFHAPFISATTQ-PEASRRPSTAAAG-------GGLGLD 74
           FS S LSA L  F L  S+ FY + PFI  TT+ P  S  P T            G   +
Sbjct: 13  FSLSILSASLKIFWLFSSLFFYLYGPFIPTTTKDPVVSTTPDTDGHSPNGHGPPNGHNPN 72

Query: 75  VSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNRGYWDIV 134
           VS   LQL I +Q++VM+N I  VT+SNP GFVTGI+Y+GIENLL+V N E +RGYWD+V
Sbjct: 73  VSLSLLQLHIQEQYVVMENEIIAVTISNPMGFVTGIQYHGIENLLDVTNPEDDRGYWDVV 132

Query: 135 WNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDKRFVMLR 194
           WN AG+ GTKG+FDRIE TDFKVIV+NDEQIELSF+RTYNSS+G  +VPLN+DKRFV+LR
Sbjct: 133 WNTAGAKGTKGMFDRIEATDFKVIVQNDEQIELSFSRTYNSSSGDGVVPLNVDKRFVILR 192

Query: 195 GSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 222
            SSGFYSYAIYEHL+EWPAF+ DNTRI FK RKDK
Sbjct: 193 NSSGFYSYAIYEHLKEWPAFNIDNTRIAFKPRKDK 227

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BLAST of Moc11g07030 vs. NCBI nr
Match: XP_031737765.1 (probable rhamnogalacturonate lyase B isoform X1 [Cucumis sativus] >KAE8651402.1 hypothetical protein Csa_002224 [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 7.6e-67
Identity = 143/219 (65.30%), Postives = 158/219 (72.15%), Query Frame = 0


Query: 9   MKNSTVFSPSNLSAPLTFFCLCCSVLFYFHAPFISATTQP----EASRRPSTAAAGGGLG 68
           MKN+ +F       P   FCL  S LF    PFIS+TT       +S   STAA      
Sbjct: 1   MKNNNLF-------PSILFCLFSSFLF----PFISSTTPSWPPMNSSHAVSTAAP----- 60

Query: 69  LDVSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNRGYWD 128
                PPLQL I DQH+VMDNGI  V LSNP+G V GI Y GIENLL + N E NRGYWD
Sbjct: 61  ---PPPPLQLHILDQHVVMDNGIIKVNLSNPKGMVNGIEYEGIENLLSLDNDEDNRGYWD 120

Query: 129 IVWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTY--NSSTGANLVPLNIDKRF 188
           IVWN+ GSSGTKGIFDR+E TDFKVIVEN+EQIELSF+RTY  NSSTG NL+PLNIDKRF
Sbjct: 121 IVWNLKGSSGTKGIFDRLEATDFKVIVENEEQIELSFSRTYNNNSSTGGNLIPLNIDKRF 180

Query: 189 VMLRGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 222
           VMLR SSGFY+YAIYEHL+EWPAF+ DNTRI FK RKDK
Sbjct: 181 VMLRNSSGFYTYAIYEHLKEWPAFNLDNTRIAFKPRKDK 200

[Close]

BLAST of Moc11g07030 vs. NCBI nr
Match: KAG6608125.1 (Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 261.9 bits (668), Expect = 4.9e-66
Identity = 133/216 (61.57%), Postives = 159/216 (73.61%), Query Frame = 0


Query: 18  SNLSAPLTFFCLCCSVLFYFHAPFISATTQ-PEASRRPSTAAAG-----------GGLGL 77
           S LS  L  F L  S+ FY + PFI  TT+ P  S  P T   G            G   
Sbjct: 14  SILSDSLKIFWLFSSLFFYVYGPFIPPTTKGPAVSTTPDTDGHGPDGHSPDGHSPDGHSP 73

Query: 78  DVSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNRGYWDI 137
           + S   LQL I +Q++VM+NGI  VT+SNP GFVTGI+Y+GIENLL+V N E +RGYWD+
Sbjct: 74  NASVSLLQLHIQEQYVVMENGIIAVTISNPMGFVTGIQYHGIENLLDVTNPEDDRGYWDV 133

Query: 138 VWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDKRFVML 197
           VWN AG+ GTKG+FDRIE TDFKVIV+NDEQIELSF+RTYNSS+G ++VPLN+DKRFV+L
Sbjct: 134 VWNTAGAKGTKGMFDRIEATDFKVIVQNDEQIELSFSRTYNSSSGDDVVPLNVDKRFVIL 193

Query: 198 RGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 222
           R SSGFYSYAIYEHL++WPAF+ DNTRI FK RKDK
Sbjct: 194 RNSSGFYSYAIYEHLKDWPAFNIDNTRIAFKPRKDK 229

[Close]

BLAST of Moc11g07030 vs. ExPASy TrEMBL
Match: A0A6J1C8K5 (uncharacterized protein LOC111009378 OS=Momordica charantia OX=3673 GN=LOC111009378 PE=4 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 5.6e-124
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MSKKSRHNMKNSTVFSPSNLSAPLTFFCLCCSVLFYFHAPFISATTQPEASRRPSTAAAG 60
           MSKKSRHNMKNSTVFSPSNLSAPLTFFCLCCSVLFYFHAPFISATTQPEASRRPSTAAAG
Sbjct: 1   MSKKSRHNMKNSTVFSPSNLSAPLTFFCLCCSVLFYFHAPFISATTQPEASRRPSTAAAG 60

Query: 61  GGLGLDVSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNR 120
           GGLGLDVSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNR
Sbjct: 61  GGLGLDVSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNR 120

Query: 121 GYWDIVWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDK 180
           GYWDIVWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDK
Sbjct: 121 GYWDIVWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDK 180

Query: 181 RFVMLRGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 222
           RFVMLRGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK
Sbjct: 181 RFVMLRGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 221

[Close]

BLAST of Moc11g07030 vs. ExPASy TrEMBL
Match: A0A6J1J0L5 (probable rhamnogalacturonate lyase B isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480244 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.6e-67
Identity = 136/215 (63.26%), Postives = 160/215 (74.42%), Query Frame = 0


Query: 15  FSPSNLSAPLTFFCLCCSVLFYFHAPFISATTQ-PEASRRPSTAAAG-------GGLGLD 74
           FS S LSA L  F L  S+ FY + PFI  TT+ P  S  P T            G   +
Sbjct: 13  FSLSILSASLKIFWLFSSLFFYLYGPFIPTTTKDPVVSTTPDTDGHSPNGHGPPNGHNPN 72

Query: 75  VSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNRGYWDIV 134
           VS   LQL I +Q++VM+N I  VT+SNP GFVTGI+Y+GIENLL+V N E +RGYWD+V
Sbjct: 73  VSLSLLQLHIQEQYVVMENEIIAVTISNPMGFVTGIQYHGIENLLDVTNPEDDRGYWDVV 132

Query: 135 WNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDKRFVMLR 194
           WN AG+ GTKG+FDRIE TDFKVIV+NDEQIELSF+RTYNSS+G  +VPLN+DKRFV+LR
Sbjct: 133 WNTAGAKGTKGMFDRIEATDFKVIVQNDEQIELSFSRTYNSSSGDGVVPLNVDKRFVILR 192

Query: 195 GSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 222
            SSGFYSYAIYEHL+EWPAF+ DNTRI FK RKDK
Sbjct: 193 NSSGFYSYAIYEHLKEWPAFNIDNTRIAFKPRKDK 227

[Close]

BLAST of Moc11g07030 vs. ExPASy TrEMBL
Match: A0A6J1FIG7 (probable rhamnogalacturonate lyase B isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445776 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.4e-65
Identity = 132/216 (61.11%), Postives = 158/216 (73.15%), Query Frame = 0


Query: 18  SNLSAPLTFFCLCCSVLFYFHAPFISATTQ-PEASRRPSTAAAG-----------GGLGL 77
           S LS  L  F L  S+ FY + PFI  TT+ P  S  P T   G            G   
Sbjct: 14  SILSDSLKIFWLFSSLFFYVYGPFIPPTTKDPAFSTTPDTNGHGPDGHNPDGHSPDGHSP 73

Query: 78  DVSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNRGYWDI 137
           + S   LQL I +Q++VM+N I  VT+SNP GFVTGI+Y+GIENLL+V N E +RGYWD+
Sbjct: 74  NASVSLLQLHIQEQYVVMENEIIAVTISNPMGFVTGIQYHGIENLLDVTNPEDDRGYWDV 133

Query: 138 VWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDKRFVML 197
           VWN AG+ GTKG+FDRIE TDFKVIV+NDEQIELSF+RTYNSS+G ++VPLN+DKRFV+L
Sbjct: 134 VWNTAGAKGTKGMFDRIEATDFKVIVQNDEQIELSFSRTYNSSSGDDVVPLNVDKRFVIL 193

Query: 198 RGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 222
           R SSGFYSYAIYEHL++WPAF+ DNTRI FK RKDK
Sbjct: 194 RNSSGFYSYAIYEHLKDWPAFNIDNTRIAFKPRKDK 229

[Close]

BLAST of Moc11g07030 vs. ExPASy TrEMBL
Match: A0A1S3CQI8 (Rhamnogalacturonan endolyase OS=Cucumis melo OX=3656 GN=LOC103503645 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.4e-65
Identity = 141/217 (64.98%), Postives = 154/217 (70.97%), Query Frame = 0


Query: 9   MKNSTVFSPSNLSAPLTFFCLCCSVLFYFHAPFISATT---QPEASRRPSTAAAGGGLGL 68
           MKNS  FS          FCL  S LF    PFIS+TT    P  SR   + AA      
Sbjct: 1   MKNSNSFSS-------ILFCLFSSFLF----PFISSTTPSWPPMNSRHAVSTAA------ 60

Query: 69  DVSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNRGYWDI 128
               PPLQL I DQH+VMDNGI  V LSNP+G V GI Y GIENLL   N E +RGYWDI
Sbjct: 61  -TPPPPLQLHIIDQHVVMDNGIIKVNLSNPKGMVNGIEYGGIENLLSTDNDEDDRGYWDI 120

Query: 129 VWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTY-NSSTGANLVPLNIDKRFVM 188
           VWN+ GSSGTKGI DR+E TDFKVIVEN+EQIELSF+RTY NSSTG  L+PLNIDKRFVM
Sbjct: 121 VWNLEGSSGTKGILDRLETTDFKVIVENEEQIELSFSRTYNNSSTGGKLIPLNIDKRFVM 180

Query: 189 LRGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 222
           LR SSGFY+YAIYEHL+EWPAF+ DNTRI FK RKDK
Sbjct: 181 LRNSSGFYTYAIYEHLKEWPAFNLDNTRIAFKPRKDK 199

[Close]

BLAST of Moc11g07030 vs. ExPASy TrEMBL
Match: A0A1S4E5R5 (uncharacterized protein LOC103503645 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503645 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.4e-65
Identity = 141/217 (64.98%), Postives = 154/217 (70.97%), Query Frame = 0


Query: 9   MKNSTVFSPSNLSAPLTFFCLCCSVLFYFHAPFISATT---QPEASRRPSTAAAGGGLGL 68
           MKNS  FS          FCL  S LF    PFIS+TT    P  SR   + AA      
Sbjct: 1   MKNSNSFSS-------ILFCLFSSFLF----PFISSTTPSWPPMNSRHAVSTAA------ 60

Query: 69  DVSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNRGYWDI 128
               PPLQL I DQH+VMDNGI  V LSNP+G V GI Y GIENLL   N E +RGYWDI
Sbjct: 61  -TPPPPLQLHIIDQHVVMDNGIIKVNLSNPKGMVNGIEYGGIENLLSTDNDEDDRGYWDI 120

Query: 129 VWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTY-NSSTGANLVPLNIDKRFVM 188
           VWN+ GSSGTKGI DR+E TDFKVIVEN+EQIELSF+RTY NSSTG  L+PLNIDKRFVM
Sbjct: 121 VWNLEGSSGTKGILDRLETTDFKVIVENEEQIELSFSRTYNNSSTGGKLIPLNIDKRFVM 180

Query: 189 LRGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 222
           LR SSGFY+YAIYEHL+EWPAF+ DNTRI FK RKDK
Sbjct: 181 LRNSSGFYTYAIYEHLKEWPAFNLDNTRIAFKPRKDK 199

[Close]

BLAST of Moc11g07030 vs. TAIR 10
Match: AT1G09910.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-52
Identity = 94/155 (60.65%), Postives = 116/155 (74.84%), Query Frame = 0


Query: 67  VSAPPLQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNRGYWDIV 126
           +S+  + L +HD+++VMDNGI  VTLS P G +TGI YNGI+N+LEV N E NRGYWD+ 
Sbjct: 44  MSSHGVHLHVHDRYVVMDNGILQVTLSKPGGIITGIEYNGIDNVLEVRNKETNRGYWDLH 103

Query: 127 WNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDKRFVMLR 186
           WN     G KGIFD I G  F+VIVE +EQ+E+SF RT++ S     +PLNIDKRF+MLR
Sbjct: 104 WN---EPGGKGIFDVISGVTFRVIVETEEQVEISFLRTWDPSLEGKYIPLNIDKRFIMLR 163

Query: 187 GSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 222
           GSSG YSY IYEHL++WP F+   TRI FKLRKDK
Sbjct: 164 GSSGVYSYGIYEHLKDWPGFELGETRIAFKLRKDK 195

[Close]

BLAST of Moc11g07030 vs. TAIR 10
Match: AT1G09890.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 199.5 bits (506), Expect = 2.8e-51
Identity = 97/139 (69.78%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 83  MDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNRGYWDIVWNVAGSSGTKGIFDRI 142
           MDNGI  VTLS P+G VTGI YNGI+NLLEV N E NRGYWD+VW   G SGT G FD I
Sbjct: 1   MDNGIARVTLSKPDGIVTGIEYNGIDNLLEVLNEEVNRGYWDLVW---GGSGTAGGFDVI 60

Query: 143 EGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDKRFVMLRGSSGFYSYAIYEHLRE 202
           +G++F+VIV+N+EQIELSFTR ++ S     VPLNIDKRFVML GSSGFY+YAIYEHL+E
Sbjct: 61  KGSNFEVIVKNEEQIELSFTRKWDPSQEGKAVPLNIDKRFVMLSGSSGFYTYAIYEHLKE 120

Query: 203 WPAFDFDNTRIVFKLRKDK 222
           WPAF    TRI FKLRK+K
Sbjct: 121 WPAFSLAETRIAFKLRKEK 136

[Close]

BLAST of Moc11g07030 vs. TAIR 10
Match: AT4G24430.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 196.1 bits (497), Expect = 3.1e-50
Identity = 84/150 (56.00%), Postives = 117/150 (78.00%), Query Frame = 0


Query: 72  LQLRIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNRGYWDIVWNVAG 131
           +QL + + H+VM NG   VT+S P+GFVTGI Y G++NLLE  N ++NRGYWD+VW+  G
Sbjct: 7   VQLDVQESHVVMGNGKVKVTISKPDGFVTGISYQGVDNLLETHNEDFNRGYWDLVWSDEG 66

Query: 132 SSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDKRFVMLRGSSGF 191
           + GT G  +RI+GT F+V+VEN+E +E+SF+R ++SS   ++ P+N+DKRF+M +  +GF
Sbjct: 67  TPGTTGKSERIKGTSFEVVVENEELVEISFSRKWDSSLQDSIAPINVDKRFIMRKDVTGF 126

Query: 192 YSYAIYEHLREWPAFDFDNTRIVFKLRKDK 222
           YSYAI+EHL EWPAF+   TRIV+KLRKDK
Sbjct: 127 YSYAIFEHLAEWPAFNLPQTRIVYKLRKDK 156

[Close]

BLAST of Moc11g07030 vs. TAIR 10
Match: AT1G09880.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-45
Identity = 89/142 (62.68%), Postives = 108/142 (76.06%), Query Frame = 0


Query: 83  MDNGITGVTLSNPEGFVTGIRYNGIENLLE-VGNAEYNRGYWDIVWNVAGSSG--TKGIF 142
           M+N    +TLSNPEGFVTGI+YNGI+N+L    N EY+RGYWD+VWN  G     TKG  
Sbjct: 1   MENRFLQLTLSNPEGFVTGIQYNGIDNVLAYYTNKEYDRGYWDVVWNFPGKKAKKTKGTL 60

Query: 143 DRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDKRFVMLRGSSGFYSYAIYEH 202
           DRIE T  +VI +NDE+IELSFTRT+N+S+    VP+NIDKRFVML+ SSGFYSYAI+E 
Sbjct: 61  DRIEATKMEVITQNDEKIELSFTRTWNTSS-TTAVPVNIDKRFVMLQNSSGFYSYAIFER 120

Query: 203 LREWPAFDFDNTRIVFKLRKDK 222
           L+ WPA + DN R+VFKL K K
Sbjct: 121 LQGWPAVELDNMRLVFKLNKKK 141

[Close]

BLAST of Moc11g07030 vs. TAIR 10
Match: AT2G22620.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 153.7 bits (387), Expect = 1.7e-37
Identity = 77/159 (48.43%), Postives = 105/159 (66.04%), Query Frame = 0


Query: 64  GLDVSAPPLQL-RIHDQHIVMDNGITGVTLSNPEGFVTGIRYNGIENLLEVGNAEYNRGY 123
           G ++ A  +QL R+    +V+DNGI  VT SNPEG +TGI+Y+GI+N+L+  +   +RGY
Sbjct: 44  GQNIPALTVQLRRVGHDTVVVDNGIVQVTFSNPEGLITGIKYHGIDNVLD--DKIDDRGY 103

Query: 124 WDIVWNVAGSSGTKGIFDRIEGTDFKVIVENDEQIELSFTRTYNSSTGANLVPLNIDKRF 183
           WD+VW        K   D++EGT F++I +N+EQIE+SFTRT+  S   +LVPLN+DKR+
Sbjct: 104 WDVVWY---EPEKKQKTDKLEGTKFEIITQNEEQIEISFTRTWTISRRGSLVPLNVDKRY 163

Query: 184 VMLRGSSGFYSYAIYEHLREWPAFDFDNTRIVFKLRKDK 222
           ++  G SG Y Y I E L  WP  D D  RIVFKL   K
Sbjct: 164 IIRSGVSGLYMYGILERLEGWPDVDMDQIRIVFKLNPKK 197

The following BLAST results are available for this feature:

BLAST of Moc11g07030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138135.1	1.1e-123	100.00	uncharacterized protein LOC111009378 [Momordica charantia]	[more]
XP_023522509.1	3.4e-67	61.78	probable rhamnogalacturonate lyase B [Cucurbita pepo subsp. pepo]	[more]
XP_022980944.1	3.4e-67	63.26	probable rhamnogalacturonate lyase B isoform X1 [Cucurbita maxima]	[more]
XP_031737765.1	7.6e-67	65.30	probable rhamnogalacturonate lyase B isoform X1 [Cucumis sativus] >KAE8651402.1 ...	[more]
KAG6608125.1	4.9e-66	61.57	Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma s...	[more]

BLAST of Moc11g07030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g07030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8K5	5.6e-124	100.00	uncharacterized protein LOC111009378 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1J0L5	1.6e-67	63.26	probable rhamnogalacturonate lyase B isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FIG7	3.4e-65	61.11	probable rhamnogalacturonate lyase B isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3CQI8	3.4e-65	64.98	Rhamnogalacturonan endolyase OS=Cucumis melo OX=3656 GN=LOC103503645 PE=3 SV=1	[more]
A0A1S4E5R5	3.4e-65	64.98	uncharacterized protein LOC103503645 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Moc11g07030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09910.1	1.5e-52	60.65	Rhamnogalacturonate lyase family protein	[more]
AT1G09890.1	2.8e-51	69.78	Rhamnogalacturonate lyase family protein	[more]
AT4G24430.1	3.1e-50	56.00	Rhamnogalacturonate lyase family protein	[more]
AT1G09880.1	1.3e-45	62.68	Rhamnogalacturonate lyase family protein	[more]
AT2G22620.1	1.7e-37	48.43	Rhamnogalacturonate lyase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010325	Rhamnogalacturonate lyase	PFAM	PF06045	Rhamnogal_lyase	coord: 66..221 e-value: 1.4E-63 score: 214.1
None	No IPR available	PANTHER	PTHR32018	RHAMNOGALACTURONATE LYASE FAMILY PROTEIN	coord: 34..221
None	No IPR available	PANTHER	PTHR32018:SF40	RHAMNOGALACTURONATE LYASE B-RELATED	coord: 34..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g07030.1	Moc11g07030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0016829	lyase activity