Moc11g06680 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g06680
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr11: 4555829 .. 4557203 (-)
RNA-Seq Expression	Moc11g06680
Synteny	Moc11g06680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGATCAAGAGAAAACGTGCAATCTATTGCAAAGTTAAGAACATCTTTTAAATGCTTTTGTTTTAGCTGTTGAACATAATGCTTCCCCACTTATGATCTCTGTAAATCAGATAGGTACATGACTGTGGTTCTAGTTAGATTCACTCATCATCTCGAGATGAGACTAGTAAATATATGTTTTTTTTAGTATAAGTGGAGATGGGAGATTCGAACCAATAACCTCTTGATCTGATATAGGTGTCAATTACCCCCAAGCTAAGCACATATTGACGATTAACAAACGTTGAATGACCTTTAAACATATTTTTTTTCCCATTTAGTTACATATTTTTTTCCCATTTAGTTCAGTACCCAGTTTTAAAACATTATTGTCTTGATTCACAGTGAAAAAAGAAAGGATACATTGCCTTTGTATTAGTTAACATTCTTGTCAAACTTCTCCAAGGGAGTTGAATAATTAGAAATAAGAGACCTTTAGATGATTGATACCATCAACTTGTGCTACGAAGCATGGATATGGACACGACACGAACATGTCATTTTCTAAAAATCTCGGACACGAACACGACAAAGACACGTTTATTATAATATACAATTTTTTTTATGTATATATCATTTTTATACCAGAAGTAAATTCATTTGCATTTTTATGCTTAAAAAAATGACTTTGATGTATTTTGTTATCAAAATATATTATTTTATCCTGTATTACTTTTTAGGTCTATTCTCATGCTTAACAAGTGTTGTTTCACATTTGTCTAACAAGTGTCGGATCAATATTTACTTTATACAAATAGTGTCTCACACACATCTATTGAACTAACAAATGTATGATCTAATTCGTGTCAATTAAGTGTTAGAGTGATCCATAGGTTACCCAAACTAAAGTACCTGTGCCTCTTAGTGCTTTATGTTACCACAAATCTGGCATTGCCCAGTTTGGCAATTAAGTTGCATAAAGATTTCTGTTCTCTATACTCTAAAGGTAGGGAAGCTGTGGAGAAGAACAGAGGAGTAGTTGGCTTGAAGCCTACGAGGGCCCCATTAGAGCCCCAACTGGAAGGCACTTCTTCTGAACCTCAATCCACGTGGAGCTATGTTAATGGCAGTGCACAAATTGGGGATGGTTTTGGTGAGTTTCAAGTTTATAGTGCCAAACCACCTCATTTTGCTGTTTATTTAGGCAATAATGCAAACGGTTCATCTTCCTTATAATGACTTCCTTTGGCCCTTTTACTTTTAGACTCTTCTTTGTTTGGTGGAATGTTTTATCATGACCAACCACAGCTAAAGTTCAAACTTCACCAACATGTCTTCACCAACATGTCTAAGTTGCAAGAGTTCAACCGTGAGAATTGGGTTAGTTTATAA

mRNA sequence

ATGCTTGATCAAGAGAAAACGTGCAATCTATTGCAAAGTAGGGAAGCTGTGGAGAAGAACAGAGGAGTAGTTGGCTTGAAGCCTACGAGGGCCCCATTAGAGCCCCAACTGGAAGGCACTTCTTCTGAACCTCAATCCACGTGGAGCTATGTTAATGGCAGTGCACAAATTGGGGATGGTTTTGACTCTTCTTTGTTTGGTGGAATGTTTTATCATGACCAACCACAGCTAAAGTTCAAACTTCACCAACATGTCTTCACCAACATGTCTAAGTTGCAAGAGTTCAACCGTGAGAATTGGGTTAGTTTATAA

Coding sequence (CDS)

ATGCTTGATCAAGAGAAAACGTGCAATCTATTGCAAAGTAGGGAAGCTGTGGAGAAGAACAGAGGAGTAGTTGGCTTGAAGCCTACGAGGGCCCCATTAGAGCCCCAACTGGAAGGCACTTCTTCTGAACCTCAATCCACGTGGAGCTATGTTAATGGCAGTGCACAAATTGGGGATGGTTTTGACTCTTCTTTGTTTGGTGGAATGTTTTATCATGACCAACCACAGCTAAAGTTCAAACTTCACCAACATGTCTTCACCAACATGTCTAAGTTGCAAGAGTTCAACCGTGAGAATTGGGTTAGTTTATAA

Protein sequence

MLDQEKTCNLLQSREAVEKNRGVVGLKPTRAPLEPQLEGTSSEPQSTWSYVNGSAQIGDGFDSSLFGGMFYHDQPQLKFKLHQHVFTNMSKLQEFNRENWVSL

Homology

[Close]

BLAST of Moc11g06680 vs. NCBI nr
Match: XP_022159749.1 (uncharacterized protein LOC111026081 [Momordica charantia])

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MLDQEKTCNLLQSREAVEKNRGVVGLKPTRAPLEPQLEGTSSEPQSTWSYVNGSAQIGDG 60
           MLDQEKTCNLLQSREAVEKNRGVVGLKPTRAPLEPQLEGTSSEPQSTWSYVNGSAQIGDG
Sbjct: 1   MLDQEKTCNLLQSREAVEKNRGVVGLKPTRAPLEPQLEGTSSEPQSTWSYVNGSAQIGDG 60

Query: 61  FDSSLFGGMFYHDQPQLKFKLHQHVFTNMSKLQEFNRENWVSL 104
           FDSSLFGGMFYHDQPQLKFKLHQHVFTNMSKLQEFNRENWVSL
Sbjct: 61  FDSSLFGGMFYHDQPQLKFKLHQHVFTNMSKLQEFNRENWVSL 103

[Close]

BLAST of Moc11g06680 vs. ExPASy TrEMBL
Match: A0A6J1E388 (uncharacterized protein LOC111026081 OS=Momordica charantia OX=3673 GN=LOC111026081 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 5.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MLDQEKTCNLLQSREAVEKNRGVVGLKPTRAPLEPQLEGTSSEPQSTWSYVNGSAQIGDG 60
           MLDQEKTCNLLQSREAVEKNRGVVGLKPTRAPLEPQLEGTSSEPQSTWSYVNGSAQIGDG
Sbjct: 1   MLDQEKTCNLLQSREAVEKNRGVVGLKPTRAPLEPQLEGTSSEPQSTWSYVNGSAQIGDG 60

Query: 61  FDSSLFGGMFYHDQPQLKFKLHQHVFTNMSKLQEFNRENWVSL 104
           FDSSLFGGMFYHDQPQLKFKLHQHVFTNMSKLQEFNRENWVSL
Sbjct: 61  FDSSLFGGMFYHDQPQLKFKLHQHVFTNMSKLQEFNRENWVSL 103

The following BLAST results are available for this feature:

BLAST of Moc11g06680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159749.1	1.2e-51	100.00	uncharacterized protein LOC111026081 [Momordica charantia]	[more]

BLAST of Moc11g06680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g06680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E388	5.9e-52	100.00	uncharacterized protein LOC111026081 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]

BLAST of Moc11g06680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g06680.1	Moc11g06680.1	mRNA