Moc11g05110 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g05110
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	60S ribosomal protein L39
Location	chr11: 3377800 .. 3378886 (+)
RNA-Seq Expression	Moc11g05110
Synteny	Moc11g05110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACGTATTGCTATTCGACTCTCTGAACTTCCATTTTCCCCTCAACGTAATGCCGTTCATCGTTCTCCGCGGCATGGATGATCGAAATTGTGCGAGCTTGTGATTTGATTTGCTCTTTCCATCCGCAGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCGATCCCGCACTGGATCCGCCTGAGAACCGACAATACGATCAGGTCTTTAGCCTACTACTCCATTGTAATCTCTTTCTCTCTCGCTCCGATTTGAGTCTTAAATTCTGACGTTCTACTTTCGAATAATGTGTTTCAGATACAACGCGAAGCGCAGGCACTGGCGTCGCACCAAACTAGGGTTCTGAGGTGTTTTTTGTTTAATACTTCAATGTTTATTTACTTTGAATTTGTTGAGATTGAGAATTTCTTGAGAACCTAGTTTTGATATTTGCGCTACTGAAATTGAGTTCATCTGACATTTTTGTTAAATCATCTCTGCACCCAAAATTTTAAGTGCTTCGTGAAATCTAAATTCATACCTCTATGGCATTTGCGTCTATTTTTCAACGATTTAAATGATATCAGTAGATGTTCTTTAGAAAAATATAGTTGAAACTTTGGGTTATAAATTAAGAAATTTATAAAATTATTTAATCAGTATCTACTTTAACTGCTTAATTAAGTTATGATCCTTAACATCAATATGAATCTCTTTCATGCTTCATGCTTGGAACAAGAATTTGTAAAATTTGATTCATAAAATTGTGTGGTTCAACTATACAATATATGATCTAATCTAAGTTTCAAATTAACGATTCATAATAATACACAGCTACAGCCATAGCCATATAGGTTTTGTGAGAACATTCTTTGGGTATACCCATTTGTCCAGTACTTCAACTACAATTTGCAGTAGCCATCGATCTAGACTCTCGATCTTCTGTCGATTTCCGTAGGGGATGTCGTAGTCGTTGTCTTGTTCTAGACTTTCTATGCTTCTTTTCCTCAAGAAAGAGGGTAAAGGCAGAGAACTCTGGTGAACTTGGCGATGGTGAGGCGATAGATGATGAATGA

mRNA sequence

ATGGTACGTATTGCTATTCGACTCTCTGAACTTCCATTTTCCCCTCAACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCGATCCCGCACTGGATCCGCCTGAGAACCGACAATACGATCAGATACAACGCGAAGCGCAGGCACTGGCGTCGCACCAAACTAGGGTTCTGAGAAAGAGGGTAAAGGCAGAGAACTCTGGTGAACTTGGCGATGGTGAGGCGATAGATGATGAATGA

Coding sequence (CDS)

ATGGTACGTATTGCTATTCGACTCTCTGAACTTCCATTTTCCCCTCAACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCGATCCCGCACTGGATCCGCCTGAGAACCGACAATACGATCAGATACAACGCGAAGCGCAGGCACTGGCGTCGCACCAAACTAGGGTTCTGAGAAAGAGGGTAAAGGCAGAGAACTCTGGTGAACTTGGCGATGGTGAGGCGATAGATGATGAATGA

Protein sequence

MVRIAIRLSELPFSPQPVSQDFQNQEEAREEDEAEQADPALDPPENRQYDQIQREAQALASHQTRVLRKRVKAENSGELGDGEAIDDE

Homology

[Close]

BLAST of Moc11g05110 vs. NCBI nr
Match: KAG7031772.1 (hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-13
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 17 PVSQDFQNQEEAREEDEAEQADPALDPPENRQYDQIQREAQALASHQTRVLR 69
          PVSQDFQNQEEAREEDEAEQA PALDP ENRQY QIQR+AQALASHQ RVLR
Sbjct: 3  PVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 54

[Close]

BLAST of Moc11g05110 vs. NCBI nr
Match: VVA11576.1 (unknown partial [Prunus dulcis])

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1   MVRIAIRLSELPFSPQPVSQDFQNQEEAREEDEAEQADPALDPPENRQYDQIQREAQALA 60
           MV +++    LP S  P  QD  NQEEA EEDEAEQA P+LDP E+RQ+ Q+QR+AQALA
Sbjct: 57  MVNLSLSSPFLPLSAVP--QDLHNQEEAGEEDEAEQAHPSLDPFEDRQHHQVQRQAQALA 116

Query: 61  SHQTRVLR 69
            HQ R LR
Sbjct: 117 PHQARFLR 122

[Close]

BLAST of Moc11g05110 vs. NCBI nr
Match: KAF5726265.1 (aspartate aminotransferase chloroplastic [Tripterygium wilfordii])

HSP 1 Score: 67.8 bits (164), Expect = 5.4e-08
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 18 VSQDFQNQEEAREEDEAEQADPALDPPENRQYDQIQREAQALAS 62
          VSQD Q+QEEAREEDEAEQA+P+LDP ENRQ++QIQREAQALAS
Sbjct: 7  VSQDLQDQEEAREEDEAEQANPSLDPHENRQHNQIQREAQALAS 50

[Close]

BLAST of Moc11g05110 vs. NCBI nr
Match: KAF5748142.1 (hypothetical protein HS088_TW04G00092 [Tripterygium wilfordii])

HSP 1 Score: 67.0 bits (162), Expect = 9.2e-08
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 17 PVSQDFQNQEEAREEDEAEQADPALDPPENRQYDQIQREAQALASH 63
          PVSQD Q+QEEAREEDEAEQA P LDP ENRQY+Q+Q EAQALAS+
Sbjct: 52 PVSQDLQDQEEAREEDEAEQAYPPLDPHENRQYNQVQCEAQALASY 97

[Close]

BLAST of Moc11g05110 vs. NCBI nr
Match: PKA65509.1 (hypothetical protein AXF42_Ash005843 [Apostasia shenzhenica])

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-07
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 7  RLSELPFSPQP-------VSQDFQNQEEAREEDEAEQADPALDPPENRQYDQIQREAQAL 66
          RL  LP   +P       V+QDFQ++EEA EEDEAEQA P LDP E+ +++QIQR+AQAL
Sbjct: 11 RLGFLPVLTEPPGCSEDAVAQDFQDKEEAGEEDEAEQAHPLLDPHEDGEHNQIQRQAQAL 70

Query: 67 ASHQTRVLRKRVKAENSGELGDG 83
          A H+ RVL+      + G L  G
Sbjct: 71 APHKARVLKSSFSGSSHGLLHFG 93

[Close]

BLAST of Moc11g05110 vs. ExPASy TrEMBL
Match: A0A5E4E8H2 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B001478 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1   MVRIAIRLSELPFSPQPVSQDFQNQEEAREEDEAEQADPALDPPENRQYDQIQREAQALA 60
           MV +++    LP S  P  QD  NQEEA EEDEAEQA P+LDP E+RQ+ Q+QR+AQALA
Sbjct: 57  MVNLSLSSPFLPLSAVP--QDLHNQEEAGEEDEAEQAHPSLDPFEDRQHHQVQRQAQALA 116

Query: 61  SHQTRVLR 69
            HQ R LR
Sbjct: 117 PHQARFLR 122

[Close]

BLAST of Moc11g05110 vs. ExPASy TrEMBL
Match: A0A7J7BX51 (Aspartate aminotransferase OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G01007 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 18 VSQDFQNQEEAREEDEAEQADPALDPPENRQYDQIQREAQALAS 62
          VSQD Q+QEEAREEDEAEQA+P+LDP ENRQ++QIQREAQALAS
Sbjct: 7  VSQDLQDQEEAREEDEAEQANPSLDPHENRQHNQIQREAQALAS 50

[Close]

BLAST of Moc11g05110 vs. ExPASy TrEMBL
Match: A0A7J7DP31 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00092 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.5e-08
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 17 PVSQDFQNQEEAREEDEAEQADPALDPPENRQYDQIQREAQALASH 63
          PVSQD Q+QEEAREEDEAEQA P LDP ENRQY+Q+Q EAQALAS+
Sbjct: 52 PVSQDLQDQEEAREEDEAEQAYPPLDPHENRQYNQVQCEAQALASY 97

[Close]

BLAST of Moc11g05110 vs. ExPASy TrEMBL
Match: A0A2I0BCI7 (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005843 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 7  RLSELPFSPQP-------VSQDFQNQEEAREEDEAEQADPALDPPENRQYDQIQREAQAL 66
          RL  LP   +P       V+QDFQ++EEA EEDEAEQA P LDP E+ +++QIQR+AQAL
Sbjct: 11 RLGFLPVLTEPPGCSEDAVAQDFQDKEEAGEEDEAEQAHPLLDPHEDGEHNQIQRQAQAL 70

Query: 67 ASHQTRVLRKRVKAENSGELGDG 83
          A H+ RVL+      + G L  G
Sbjct: 71 APHKARVLKSSFSGSSHGLLHFG 93

[Close]

BLAST of Moc11g05110 vs. ExPASy TrEMBL
Match: A0A445K5S6 (60S ribosomal protein L39 OS=Glycine soja OX=3848 GN=D0Y65_013914 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 14  SPQPVSQDFQNQEEAREEDEAEQADPALDPPENRQYDQIQREAQALASHQTRVLRK 70
           S  PV+QD QNQEE  EEDEAEQA P LDP E+RQ+ Q+QREA +LASHQ  +L +
Sbjct: 58  SCHPVAQDIQNQEEVGEEDEAEQAHPLLDPHEDRQHHQVQREAPSLASHQAWILSR 113

The following BLAST results are available for this feature:

BLAST of Moc11g05110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031772.1	3.3e-13	90.38	hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyro...	[more]
VVA11576.1	3.2e-08	60.29	unknown partial [Prunus dulcis]	[more]
KAF5726265.1	5.4e-08	84.09	aspartate aminotransferase chloroplastic [Tripterygium wilfordii]	[more]
KAF5748142.1	9.2e-08	80.43	hypothetical protein HS088_TW04G00092 [Tripterygium wilfordii]	[more]
PKA65509.1	2.7e-07	50.60	hypothetical protein AXF42_Ash005843 [Apostasia shenzhenica]	[more]

BLAST of Moc11g05110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g05110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5E4E8H2	1.5e-08	60.29	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B001478 PE=4 SV=1	[more]
A0A7J7BX51	2.6e-08	84.09	Aspartate aminotransferase OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G010...	[more]
A0A7J7DP31	4.5e-08	80.43	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00092 ...	[more]
A0A2I0BCI7	1.3e-07	50.60	Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005843 P...	[more]
A0A445K5S6	1.7e-07	64.29	60S ribosomal protein L39 OS=Glycine soja OX=3848 GN=D0Y65_013914 PE=3 SV=1	[more]

BLAST of Moc11g05110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g05110.1	Moc11g05110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0006520	cellular amino acid metabolic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004069	L-aspartate:2-oxoglutarate aminotransferase activity
molecular_function	GO:0030170	pyridoxal phosphate binding