Moc11g04410 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g04410
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic
Location	chr11: 2832075 .. 2833070 (+)
RNA-Seq Expression	Moc11g04410
Synteny	Moc11g04410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAGCAGTATCCTCCACCACCGCCACCGCCGTCCACATTTCCCGGAGCAACTTCCTCTCTCCGACCCCAAAAACCGCCGCCATTTCCTTCAACCCCATTACTTCCCTCCCCAAGCCGCTCAAATTCTGCATCAGAAATTCCAACGACTCATCGGCGGAGACCGCCGCAACAGAGACGGCGACTGAGCCGGAGCAAGAAAGCTCCATCGAAGCCCCCGATGGAGCGCCGTCTCTGATTTCGGCTCTCAACGTCGAGCGAGCCCTCCGTGGCATTCGTAACGTTATCAAACTCTAGTCCCCTCCCATTTACCAGATTTATGATCAAGTTCGTATAAATTTCAATGAAATTTGTTCTGGTATTGCAGCAATTACAGACGTCAATCACTACGGAAGACTCGGACTCCGCAGAGGATGTCCATACGATCAGGTAATTTAATTCAATCAACTTCTCAAAAAGAAACCCTAATTCTTCGATTGATCTCGATCGGCCCCAATTCCTTCCAGGTTCCGATTGCGTACAACATCAAGGTTGAAGAACTGAAGAGCCAGGGATTGGAGGACGAAGAACTCAACCAAAAACTCGAACTCCTAAAAGTCAGTAGGAAACCAAATCAAAACAAAACCCTAAATCCTTTTTTGAGATGGGATTGCAAGTAATTCTGAAGAATGATTACAGGAATCGTACACGATACTGTCATCGGTGGAAGAGAGGAGAATGTACGATTGGAGCTTAGCCAGAATCGGAGAACCAGACAAATATTCCTGGCCGTTCGAGGCCGATATAACTCAGATTCAAACTCAGATGCCGCCGCCGAAGGTACTCTCCATTTGCGTCAAGAAAAGCCGTAGTGATGTGGTGAAACTGACCTTTGATTTGTGATGGCGATGAGTGCAGGAACCGGAAGACGAGGGACCGACGAGATTGGTGGGTTACTTCATACTGGGCTGGTTCGCTCTGTCCGTCGTGTTATCCATTGCTCTGAATCTTTAG

mRNA sequence

ATGGCGGCAGCAGTATCCTCCACCACCGCCACCGCCGTCCACATTTCCCGGAGCAACTTCCTCTCTCCGACCCCAAAAACCGCCGCCATTTCCTTCAACCCCATTACTTCCCTCCCCAAGCCGCTCAAATTCTGCATCAGAAATTCCAACGACTCATCGGCGGAGACCGCCGCAACAGAGACGGCGACTGAGCCGGAGCAAGAAAGCTCCATCGAAGCCCCCGATGGAGCGCCGTCTCTGATTTCGGCTCTCAACGTCGAGCGAGCCCTCCGTGGCATTCCAATTACAGACGTCAATCACTACGGAAGACTCGGACTCCGCAGAGGATGTCCATACGATCAGGTTCCGATTGCGTACAACATCAAGGTTGAAGAACTGAAGAGCCAGGGATTGGAGGACGAAGAACTCAACCAAAAACTCGAACTCCTAAAAGAATCGTACACGATACTGTCATCGGTGGAAGAGAGGAGAATGTACGATTGGAGCTTAGCCAGAATCGGAGAACCAGACAAATATTCCTGGCCGTTCGAGGCCGATATAACTCAGATTCAAACTCAGATGCCGCCGCCGAAGGAACCGGAAGACGAGGGACCGACGAGATTGGTGGGTTACTTCATACTGGGCTGGTTCGCTCTGTCCGTCGTGTTATCCATTGCTCTGAATCTTTAG

Coding sequence (CDS)

ATGGCGGCAGCAGTATCCTCCACCACCGCCACCGCCGTCCACATTTCCCGGAGCAACTTCCTCTCTCCGACCCCAAAAACCGCCGCCATTTCCTTCAACCCCATTACTTCCCTCCCCAAGCCGCTCAAATTCTGCATCAGAAATTCCAACGACTCATCGGCGGAGACCGCCGCAACAGAGACGGCGACTGAGCCGGAGCAAGAAAGCTCCATCGAAGCCCCCGATGGAGCGCCGTCTCTGATTTCGGCTCTCAACGTCGAGCGAGCCCTCCGTGGCATTCCAATTACAGACGTCAATCACTACGGAAGACTCGGACTCCGCAGAGGATGTCCATACGATCAGGTTCCGATTGCGTACAACATCAAGGTTGAAGAACTGAAGAGCCAGGGATTGGAGGACGAAGAACTCAACCAAAAACTCGAACTCCTAAAAGAATCGTACACGATACTGTCATCGGTGGAAGAGAGGAGAATGTACGATTGGAGCTTAGCCAGAATCGGAGAACCAGACAAATATTCCTGGCCGTTCGAGGCCGATATAACTCAGATTCAAACTCAGATGCCGCCGCCGAAGGAACCGGAAGACGAGGGACCGACGAGATTGGTGGGTTACTTCATACTGGGCTGGTTCGCTCTGTCCGTCGTGTTATCCATTGCTCTGAATCTTTAG

Protein sequence

MAAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATETATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADITQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL

Homology

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BLAST of Moc11g04410 vs. NCBI nr
Match: XP_022151248.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Momordica charantia])

HSP 1 Score: 431.0 bits (1107), Expect = 6.1e-117
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MAAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATE 60
           MAAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATE
Sbjct: 1   MAAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATE 60

Query: 61  TATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 120
           TATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN
Sbjct: 61  TATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 120

Query: 121 IKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADI 180
           IKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADI
Sbjct: 121 IKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADI 180

Query: 181 TQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 223
           TQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL
Sbjct: 181 TQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 222

[Close]

BLAST of Moc11g04410 vs. NCBI nr
Match: XP_038898705.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Benincasa hispida])

HSP 1 Score: 379.0 bits (972), Expect = 2.8e-101
Identity = 194/221 (87.78%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 2   AAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATET 61
           AA  S+TT T +HI RSNFLSPT KT AISFNPITS PKPLKF IRN N+SSAETA TET
Sbjct: 4   AAVPSTTTTTTIHIRRSNFLSPTAKTTAISFNPITSHPKPLKFIIRNYNESSAETATTET 63

Query: 62  ATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 121
            TEPE ESS++A D +PSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI
Sbjct: 64  TTEPEAESSLKASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 123

Query: 122 KVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 181
           KVEELKSQGLE+EELNQKLELLKESY ILSSVEERRMYDWSLARIGEPDKYSWPFEADIT
Sbjct: 124 KVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 183

Query: 182 QIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 223
           QIQTQ+PPPKEPEDEGPTRLVGYF LGWF LS VLSIALNL
Sbjct: 184 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSAVLSIALNL 224

[Close]

BLAST of Moc11g04410 vs. NCBI nr
Match: XP_023524366.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.5 bits (968), Expect = 8.0e-101
Identity = 196/222 (88.29%), Postives = 207/222 (93.24%), Query Frame = 0


Query: 2   AAAVSSTTA-TAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATE 61
           AAAV STT+ TAVHI RSNFLSPT KT AI FN ITSLPKPLKF IRNSNDSSAET  T+
Sbjct: 4   AAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSIRNSNDSSAETVTTD 63

Query: 62  TATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 121
           TA+EPE ESS++A DG+ SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN
Sbjct: 64  TASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 123

Query: 122 IKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADI 181
           IKVEELKSQGLE+EELNQKLELLKESYTILSSVEERRMYDWSL+RIGEP+KY+WPFEADI
Sbjct: 124 IKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADI 183

Query: 182 TQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 223
           TQIQTQ+PPPKEPEDEGPTRLVGYF LGWF LSVVLSIALNL
Sbjct: 184 TQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of Moc11g04410 vs. NCBI nr
Match: XP_022940147.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita moschata])

HSP 1 Score: 375.2 bits (962), Expect = 4.0e-100
Identity = 194/222 (87.39%), Postives = 207/222 (93.24%), Query Frame = 0


Query: 2   AAAVSSTTA-TAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATE 61
           AAAV STT+ TAVHI RSNFLSPT KT AI FN ITSLPKPLKF +RNSNDSSAET  T+
Sbjct: 4   AAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTD 63

Query: 62  TATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 121
           TA+EPE ESS++A DG+ SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN
Sbjct: 64  TASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 123

Query: 122 IKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADI 181
           IKVEELKSQGLE+EEL+QKLELLKESYTILSSVEERRMYDWSL+RIGEP+KY+WPFEADI
Sbjct: 124 IKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADI 183

Query: 182 TQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 223
           TQIQTQ+PPPKEPEDEGPTRLVGYF LGWF LSVVLSIALNL
Sbjct: 184 TQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of Moc11g04410 vs. NCBI nr
Match: KAG6608340.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037691.1 NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374.4 bits (960), Expect = 6.8e-100
Identity = 190/221 (85.97%), Postives = 205/221 (92.76%), Query Frame = 0


Query: 2   AAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATET 61
           AA  S+T+ TAVHI RS+FLSPT KT AI FN ITSLPKPLKF +RNSNDSSAET  T+T
Sbjct: 5   AAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDT 64

Query: 62  ATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 121
           A+EPE ESS++A DG+ SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI
Sbjct: 65  ASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 124

Query: 122 KVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 181
           KVEELKSQGLE+EELNQKLELLKESYTILSSVEERRMYDWSL+RIGEP+KY+WPFEADIT
Sbjct: 125 KVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADIT 184

Query: 182 QIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 223
           QIQTQ+PPPKEPEDEGPTRLVGYF LGWF LS+VLSIALNL
Sbjct: 185 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 225

[Close]

BLAST of Moc11g04410 vs. ExPASy Swiss-Prot
Match: Q84VQ4 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhU PE=1 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-55
Identity = 117/221 (52.94%), Postives = 152/221 (68.78%), Query Frame = 0


Query: 1   MAAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATE 60
           MA+  + T  + VHI   + L   P T +  + P  +  + +    RNS++ SAE A TE
Sbjct: 1   MASLSTITQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAE-AETE 60

Query: 61  TATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 120
             +    +   EAP  +PSLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y 
Sbjct: 61  GGSSTAVD---EAPKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYK 120

Query: 121 IKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADI 180
            +V+ELK QGL++E+L  K++L+KESYTILS+VEERRMYDWSLAR  + ++Y WPFE DI
Sbjct: 121 ERVKELKEQGLDEEQLKTKMDLIKESYTILSTVEERRMYDWSLARSEKAERYVWPFEVDI 180

Query: 181 TQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALN 222
            +   + PPP+EPED GPTR++GYFI  W  L V LS+A N
Sbjct: 181 MEPSREEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 217

[Close]

BLAST of Moc11g04410 vs. ExPASy TrEMBL
Match: A0A6J1DBN8 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018934 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.0e-117
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MAAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATE 60
           MAAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATE
Sbjct: 1   MAAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATE 60

Query: 61  TATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 120
           TATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN
Sbjct: 61  TATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 120

Query: 121 IKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADI 180
           IKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADI
Sbjct: 121 IKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADI 180

Query: 181 TQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 223
           TQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL
Sbjct: 181 TQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 222

[Close]

BLAST of Moc11g04410 vs. ExPASy TrEMBL
Match: A0A6J1FIT6 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445859 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.9e-100
Identity = 194/222 (87.39%), Postives = 207/222 (93.24%), Query Frame = 0


Query: 2   AAAVSSTTA-TAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATE 61
           AAAV STT+ TAVHI RSNFLSPT KT AI FN ITSLPKPLKF +RNSNDSSAET  T+
Sbjct: 4   AAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTD 63

Query: 62  TATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 121
           TA+EPE ESS++A DG+ SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN
Sbjct: 64  TASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 123

Query: 122 IKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADI 181
           IKVEELKSQGLE+EEL+QKLELLKESYTILSSVEERRMYDWSL+RIGEP+KY+WPFEADI
Sbjct: 124 IKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADI 183

Query: 182 TQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 223
           TQIQTQ+PPPKEPEDEGPTRLVGYF LGWF LSVVLSIALNL
Sbjct: 184 TQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of Moc11g04410 vs. ExPASy TrEMBL
Match: A0A6J1IZ95 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481243 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 4.3e-100
Identity = 194/222 (87.39%), Postives = 205/222 (92.34%), Query Frame = 0


Query: 2   AAAVSSTTA-TAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATE 61
           AAAV STT+ T VHI RSNFL PT KT AI FN ITSLPKPLKF IRNSNDSSAET  T+
Sbjct: 4   AAAVPSTTSTTVVHIRRSNFLCPTSKTTAIFFNYITSLPKPLKFSIRNSNDSSAETVTTD 63

Query: 62  TATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 121
           TA+EPE ESS++A DG+ SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN
Sbjct: 64  TASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 123

Query: 122 IKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADI 181
           IKVEELKSQGLE+EELNQKLELLKESYTILSSVEERRMYDWSL+RIGEP+KY+WPFEADI
Sbjct: 124 IKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADI 183

Query: 182 TQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 223
           TQIQTQ+PPPKEPEDEGPTRLVGYF LGWF LSVVLSIALNL
Sbjct: 184 TQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of Moc11g04410 vs. ExPASy TrEMBL
Match: A0A5A7VF89 (NAD(P)H-quinone oxidoreductase subunit U OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001750 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.1e-99
Identity = 193/221 (87.33%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 2   AAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATET 61
           AAAV ST  T VHI RSNF SPT K  AISFNPITS  KPLKF IRNSN+SSAETA TET
Sbjct: 3   AAAVPST--TTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTET 62

Query: 62  ATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 121
           ATE E+ESS++A D +PSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI
Sbjct: 63  ATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 122

Query: 122 KVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 181
           KV+ELKSQGLE+EELNQKLELLKESY ILSSVEERRMYDWSLARIGEPDKYSWPFEADIT
Sbjct: 123 KVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 182

Query: 182 QIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 223
           QIQTQ+PPPKEPEDEGPTRLVGYF LGWF LS+VLSIALNL
Sbjct: 183 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of Moc11g04410 vs. ExPASy TrEMBL
Match: A0A0A0L072 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G647480 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.1e-99
Identity = 194/221 (87.78%), Postives = 201/221 (90.95%), Query Frame = 0


Query: 2   AAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATET 61
           AAAV ST  T VHI RSNFLSPT K   ISFNPITS  KPLKF IRNSN+SSAETA TET
Sbjct: 3   AAAVPST--TTVHIRRSNFLSPTTKHTLISFNPITSRSKPLKFIIRNSNESSAETATTET 62

Query: 62  ATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 121
           ATEPE ESS++A   +PSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI
Sbjct: 63  ATEPEAESSLQASGESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 122

Query: 122 KVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 181
           KVEELKSQGLE+EELNQKLELLKESY ILSSVEERRMYDWSLARIGEPDKYSWPFEADIT
Sbjct: 123 KVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 182

Query: 182 QIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 223
           QIQTQ+PPPKEPEDEGPTRLVGYF LGWF LS+VLSIALNL
Sbjct: 183 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of Moc11g04410 vs. TAIR 10
Match: AT5G21430.1 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-56
Identity = 117/221 (52.94%), Postives = 152/221 (68.78%), Query Frame = 0


Query: 1   MAAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATE 60
           MA+  + T  + VHI   + L   P T +  + P  +  + +    RNS++ SAE A TE
Sbjct: 1   MASLSTITQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAE-AETE 60

Query: 61  TATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 120
             +    +   EAP  +PSLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y 
Sbjct: 61  GGSSTAVD---EAPKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYK 120

Query: 121 IKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADI 180
            +V+ELK QGL++E+L  K++L+KESYTILS+VEERRMYDWSLAR  + ++Y WPFE DI
Sbjct: 121 ERVKELKEQGLDEEQLKTKMDLIKESYTILSTVEERRMYDWSLARSEKAERYVWPFEVDI 180

Query: 181 TQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALN 222
            +   + PPP+EPED GPTR++GYFI  W  L V LS+A N
Sbjct: 181 MEPSREEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 217

[Close]

BLAST of Moc11g04410 vs. TAIR 10
Match: AT5G21430.2 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 211.1 bits (536), Expect = 9.3e-55
Identity = 116/221 (52.49%), Postives = 151/221 (68.33%), Query Frame = 0


Query: 1   MAAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATE 60
           MA+  + T  + VHI   + L   P T +  + P  +  + +    RNS++ SAE A TE
Sbjct: 1   MASLSTITQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAE-AETE 60

Query: 61  TATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYN 120
             +    +   EAP  +PSLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y 
Sbjct: 61  GGSSTAVD---EAPKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYK 120

Query: 121 IKVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADI 180
            +V+ELK QGL++E+L  K++L+K SYTILS+VEERRMYDWSLAR  + ++Y WPFE DI
Sbjct: 121 ERVKELKEQGLDEEQLKTKMDLIK-SYTILSTVEERRMYDWSLARSEKAERYVWPFEVDI 180

Query: 181 TQIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALN 222
            +   + PPP+EPED GPTR++GYFI  W  L V LS+A N
Sbjct: 181 MEPSREEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 216

The following BLAST results are available for this feature:

BLAST of Moc11g04410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151248.1	6.1e-117	100.00	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Momordica charantia]	[more]
XP_038898705.1	2.8e-101	87.78	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Benincasa hispida]	[more]
XP_023524366.1	8.0e-101	88.29	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022940147.1	4.0e-100	87.39	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita moschata]	[more]
KAG6608340.1	6.8e-100	85.97	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic, partial [Cucurbita argy...	[more]

BLAST of Moc11g04410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84VQ4	1.8e-55	52.94	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Moc11g04410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBN8	3.0e-117	100.00	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Momordica charantia O...	[more]
A0A6J1FIT6	1.9e-100	87.39	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A6J1IZ95	4.3e-100	87.39	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A5A7VF89	2.1e-99	87.33	NAD(P)H-quinone oxidoreductase subunit U OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0L072	2.1e-99	87.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G647480 PE=4 SV=1	[more]

BLAST of Moc11g04410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21430.1	1.3e-56	52.94	Chaperone DnaJ-domain superfamily protein	[more]
AT5G21430.2	9.3e-55	52.49	Chaperone DnaJ-domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036869	Chaperone J-domain superfamily	GENE3D	1.10.287.110	DnaJ domain	coord: 95..172 e-value: 1.3E-5 score: 27.2
IPR036869	Chaperone J-domain superfamily	SUPERFAMILY	46565	Chaperone J-domain	coord: 98..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..68
IPR044199	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic	PANTHER	PTHR47726	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT U, CHLOROPLASTIC	coord: 1..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g04410.1	Moc11g04410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)