Moc11g03910 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g03910
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CRG16
Location	chr11: 2555697 .. 2556161 (+)
RNA-Seq Expression	Moc11g03910
Synteny	Moc11g03910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGACGGTGGGTGATCCACCCATCTGTGACTGGCGAACCAGGAAAATGAGCTGTCGCTCAACCAATGGCCAGCTCGTAAACTCCGGGCAGCTGCCCGCCCTGCCCGATTCCTCCCTCCTCCACTCGTTTTCAGCCGCCCTCTGTCTTTATATATACAGCCACTGCCCTTCCCTTTTCCGCTGTCCAAAGTTTCCTCTCCACTCTCAATTTTCTTCGCTCTACCATCTTTTTCTCTCTTTCCAAACCCTAAAAACTTCCTCCGGAATGGCCGCCGTCTCCAGGGCTTCTTTCATCGCCATTGTGGCCGTTCTAATCGCCGTGTTCTCCATCGCCGCCGCTCAATCCGTCGAGCCTCCCGCTCCCGCGCCAGCTTCTCCGGCCACCTCTGTCGTACCGTCGTTGAGCTTCGGTTGCGTCGCTGCTTTCGCCGCTCTCGTCTTCGGATCTGCCCTTAAAGCTTGA

mRNA sequence

ATGTGGACGGTGGGTGATCCACCCATCTGTGACTGGCGAACCAGGAAAATGAGCTGTCGCTCAACCAATGGCCAGCTCGTAAACTCCGGGCAGCTGCCCGCCCTGCCCGATTCCTCCCTCCTCCACTCGTTTTCAGCCGCCCTCTGTCTTTATATATACAGCCACTGCCCTTCCCTTTTCCGCTGTCCAAAGTTTCCTCTCCACTCTCAATTTTCTTCGCTCTACCATCTTTTTCTCTCTTTCCAAACCCTAAAAACTTCCTCCGGAATGGCCGCCGTCTCCAGGGCTTCTTTCATCGCCATTGTGGCCGTTCTAATCGCCGTGTTCTCCATCGCCGCCGCTCAATCCGTCGAGCCTCCCGCTCCCGCGCCAGCTTCTCCGGCCACCTCTGTCGTACCGTCGTTGAGCTTCGGTTGCGTCGCTGCTTTCGCCGCTCTCGTCTTCGGATCTGCCCTTAAAGCTTGA

Coding sequence (CDS)

ATGTGGACGGTGGGTGATCCACCCATCTGTGACTGGCGAACCAGGAAAATGAGCTGTCGCTCAACCAATGGCCAGCTCGTAAACTCCGGGCAGCTGCCCGCCCTGCCCGATTCCTCCCTCCTCCACTCGTTTTCAGCCGCCCTCTGTCTTTATATATACAGCCACTGCCCTTCCCTTTTCCGCTGTCCAAAGTTTCCTCTCCACTCTCAATTTTCTTCGCTCTACCATCTTTTTCTCTCTTTCCAAACCCTAAAAACTTCCTCCGGAATGGCCGCCGTCTCCAGGGCTTCTTTCATCGCCATTGTGGCCGTTCTAATCGCCGTGTTCTCCATCGCCGCCGCTCAATCCGTCGAGCCTCCCGCTCCCGCGCCAGCTTCTCCGGCCACCTCTGTCGTACCGTCGTTGAGCTTCGGTTGCGTCGCTGCTTTCGCCGCTCTCGTCTTCGGATCTGCCCTTAAAGCTTGA

Protein sequence

MWTVGDPPICDWRTRKMSCRSTNGQLVNSGQLPALPDSSLLHSFSAALCLYIYSHCPSLFRCPKFPLHSQFSSLYHLFLSFQTLKTSSGMAAVSRASFIAIVAVLIAVFSIAAAQSVEPPAPAPASPATSVVPSLSFGCVAAFAALVFGSALKA

Homology

[Close]

BLAST of Moc11g03910 vs. NCBI nr
Match: KAG7024335.1 (hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 55/84 (65.48%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 71  FSSLYHLFLSFQTLKTSSGMAAVSRASFIAIVAVLIAVFSIAAAQSVEPPAPAPASPATS 130
           F  L   F    TL+    MAAVS+ SF+A+VAVL  V S+A AQS E PAPAPASPATS
Sbjct: 5   FPRLSIFFGFLLTLEIFRAMAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATS 64

Query: 131 VVPSLSFGCVAAFAALVFGSALKA 155
           VVPSLS  CV AF ALVFGSALKA
Sbjct: 65  VVPSLSVACVGAFVALVFGSALKA 88

[Close]

BLAST of Moc11g03910 vs. NCBI nr
Match: KAG6591454.1 (hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-12
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 90  MAAVSRASFIAIVAVLIAVFSIAAAQSVEPPAPAPASPATSVVPSLSFGCVAAFAALVFG 149
           MAAVS+ SF+A+VAVL  V S+A AQS E PAPAPASPATSVVPSLS  CV AF ALVFG
Sbjct: 28  MAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFG 87

Query: 150 SALKA 155
           SALKA
Sbjct: 88  SALKA 92

[Close]

BLAST of Moc11g03910 vs. NCBI nr
Match: KGN55315.1 (hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sativus] >BAA11428.1 CRG16 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 6.3e-12
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 90  MAAVSRASFIAIVAVLIAVFSIAAAQSVEPPAPAPASPATSVVPSLSFGCVAAFAALVFG 149
           MAAVS+ SF+A+VAVL AV S+A AQS E PAP PASPA SVVPSLSF CV AF AL+FG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 150 SALKA 155
           SALKA
Sbjct: 61  SALKA 65

[Close]

BLAST of Moc11g03910 vs. NCBI nr
Match: KAG6598305.1 (hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-06
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 87  SSGMAAVSRASFIAIVAVLIAVFSIAAAQSVEPPAPAPASPATSVVPSLSFGCVAAFAAL 146
           S  MA VS+AS +A++A++ AV S+AA    E PAP+PASPATS+ PS    CVAAF AL
Sbjct: 65  SESMAGVSQASLVALIAIVFAVASVAA---TEAPAPSPASPATSIAPSFVSACVAAFVAL 124

Query: 147 VFGSALK 154
            FGS L+
Sbjct: 125 AFGSTLR 128

[Close]

BLAST of Moc11g03910 vs. NCBI nr
Match: KGN62403.1 (hypothetical protein Csa_018595 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-04
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 90  MAAVSRASFIAIVAVLIAVFSIAAAQSVEPPAPAPASPATSVVPSLSFGCVAAFAALVFG 149
           MAA+S+ S +A++A++ A+ S+AA    E PAP+PASPATS+ PS    C+AAF AL FG
Sbjct: 67  MAALSKVSLLALIALIFALSSVAAQ---EAPAPSPASPATSIAPSAVSACLAAFLALAFG 126

Query: 150 SALK 154
           S L+
Sbjct: 127 STLR 127

[Close]

BLAST of Moc11g03910 vs. ExPASy TrEMBL
Match: Q96504 (CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-12
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 90  MAAVSRASFIAIVAVLIAVFSIAAAQSVEPPAPAPASPATSVVPSLSFGCVAAFAALVFG 149
           MAAVS+ SF+A+VAVL AV S+A AQS E PAP PASPA SVVPSLSF CV AF AL+FG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 150 SALKA 155
           SALKA
Sbjct: 61  SALKA 65

[Close]

BLAST of Moc11g03910 vs. ExPASy TrEMBL
Match: A0A0A0LKU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-04
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 90  MAAVSRASFIAIVAVLIAVFSIAAAQSVEPPAPAPASPATSVVPSLSFGCVAAFAALVFG 149
           MAA+S+ S +A++A++ A+ S+AA    E PAP+PASPATS+ PS    C+AAF AL FG
Sbjct: 67  MAALSKVSLLALIALIFALSSVAAQ---EAPAPSPASPATSIAPSAVSACLAAFLALAFG 126

Query: 150 SALK 154
           S L+
Sbjct: 127 STLR 127

The following BLAST results are available for this feature:

BLAST of Moc11g03910 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024335.1	1.3e-12	65.48	hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591454.1	3.7e-12	76.92	hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN55315.1	6.3e-12	75.38	hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sat...	[more]
KAG6598305.1	6.8e-06	56.72	hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN62403.1	6.3e-04	53.13	hypothetical protein Csa_018595 [Cucumis sativus]	[more]

BLAST of Moc11g03910 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g03910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q96504	3.1e-12	75.38	CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1	[more]
A0A0A0LKU1	3.1e-04	53.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1	[more]

BLAST of Moc11g03910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g03910.1	Moc11g03910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane