Moc11g03560 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g03560
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr11: 2288449 .. 2290817 (+)
RNA-Seq Expression	Moc11g03560
Synteny	Moc11g03560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCTGATGAGAGCCATCGGTGCTTCGAAGAGAAGAGCCTGAAAGAAGCGGCTGATCACTTAGATGAGGCAAGACCGAGCCCTGATCGTCAACTTAATCCGACCACCCTTGACGGGGGAGAACCAGTGTCGGGCCTGAATAAAGCGACAGACCTCTCGGGAAAGGCGAGGCCGAGCCCTGGTTATCGACTTAATCCGACCACCCTTGATAAGGGAGAACCAGTGGCGGGCCTGATTAAAGCGACAGATCTTTCGGGAGAGGCAAGGCCGAGCCCTGGTCATCGACTTAATTCGACCACCCTTGACAGGGGAGAACCGGCTGAAGAGGTAGAATCTGTCCCTCTGACAGCCGAAGATCGACGGGTCAACATCGGAACCAAGTTGGGGAGTGAGGAAAGAGAAAGCCTTATAAACTTCCTCAGAAGCAACACTGATGTGTTCGCATGGTCACCAGTGGACATGCCGGGAATCGACCGAGGAGTTATGGTACATCGACTCAACGTCGACGAAAGCTGTAAGCCAGTGAAACAGAAGCGTCGCGCGTTCAACCAAGAAAGAAACGAGATTGTAGCTGAACAGGTGGATGAGCTACTGAAAACAGGCTTCATTCGGGAAGTACATTATCCCCAGTGGATATCCAACGTGGTGCTGGTAAAGAAGCCAAACGGCAAATGGAGAATGTGCATCGACTTCACGGATCTAAATAAGGCCTGTCCAAAGGATTCTTTTCCTTTGCCTCGAATAGATCAACTGGTTGATGCCACTGCAGGACATGAAAGATTGAGTTTCATGGATGCCTACTCTGGATATAATCAAATCAAGATGCATGTACCGGATCAGGAGAAAACTTCTTTTGTCACGAGTCGAGGCTTGTATTGCTACACCGTGATGCCATTTGGACTAAAGAATGCAGGTGCAACCTACCAACGAATGGTGAATCGGATGTTTGCAGCCTTAATCGGCAAAAATATGGAAGTCTACGTAGACGACATGCTGGTAAAGAGTCGAAAGAACGAGCGACACGAAGAGGATTTGGCAGAAGCGTTCGACATCTTGCGAAAGTACAAGATGAAGTTGAATCCCACCAAATGCACGTTTGGAGTGACCTCAGGCAAGTTCCTGGGATTTTTAGTGCACCAAAGGGGAATCGAAGCCAATCCAGATAAGATCAAAGCTGTTCTGGAGATGGATCCACCTAAAACTCTAAAGCAGCTGCAGGGACTCAATGGAAGGATAGCAGCACTCAACAGATTCGTTAGCCGTTCCACTGACAAGTGCCTACCATTCTTCAAAATCTTAAGGAAGAAAGGACAATTTGAATGGACGGAAGAGTGCGAGGCTGCCTTTAAGGAGCTGAAACAGTACCTAGGGGCAGCTCCACTCCTCGCAAAGCTGATCGTGGGTGATGAACTCTACTTATACTTAGCTGTATCCAGCACTGCGGTGAGTTCCGCGTTAATAAAGGAAGAAGATGGACGACGATCCCCAATTTACTACACAAGCAAAGCAATGGTAGATGCAGAACTTAGATACCCACCAATGGAGAAGCTGGCATTGGCACTGGTCACTTCAGCTCGGAGACTACGCCCGTATTTCCAAGCTCACAAAATAATGGTCCTCACCAACTTTCCCTTACGACAGATCTTACAAAAGCCAGACACTTCTGGACGACTGGTAAAGTGGGCTGTAGAACTCAGCGAGTACGACATTCACTATAAGCCAAGAACTGCCATGAAAGGGCAGGTTGTGGCAGACTTCATAGCGGAATTAACACCAACAGAGCCTCAAGTATATAGTATCGACCCACAAGTGGTTGAGGAAGAACAACTCTTGACACTCTACGTAGATGGGTCCTCAAATTTTCGGGGATGCGGGGTAGGACTCCTACTAATCTCTCCAGATAAAGAAAGATTCGAATATGCGCTGCGATTCAACTTTCATGCATCCAACAACGAAGCCGAGTACGAAGCTCTACTAGCAGGACTAAAAGTGGCCAGGTACGTTGGGGTCAGGAACATACTAATACTTAGTGATTCACAGCTGATTGTGGGTCAGGTGAAACAGGAGTTCCAGGCTAGAGAACCGCGAATGGCGAAATACCTTTCACAGGTAAGAAACCAGCTCGACCAGTTCTCAAAATATGAGATTTGACAAATTCCACGTGCTCAAAACGTCAACGCCGATGCGTTAGCTCGACTAGCTGCGGCTTATGAAACCGACTTAGGCAGAACTGTACCGGTCGAGATTCTACCCGAGCCAAGCATAGAAGCTCAGGAAGCCATGGATATCGACAATCAAGGGCAACCAGAAGAAAACTGGAAGAGCCCTTTGATCAAATGTTTGAAAGATGGGATCCTGCCTACTGA

mRNA sequence

ATGAATCCTGATGAGAGCCATCGGTGCTTCGAAGAGAAGAGCCTGAAAGAAGCGGCTGATCACTTAGATGAGGCAAGACCGAGCCCTGATCGTCAACTTAATCCGACCACCCTTGACGGGGGAGAACCAGTGTCGGGCCTGAATAAAGCGACAGACCTCTCGGGAAAGGCGAGGCCGAGCCCTGGTTATCGACTTAATCCGACCACCCTTGATAAGGGAGAACCAGTGGCGGGCCTGATTAAAGCGACAGATCTTTCGGGAGAGGCAAGGCCGAGCCCTGGTCATCGACTTAATTCGACCACCCTTGACAGGGGAGAACCGGCTGAAGAGGTAGAATCTGTCCCTCTGACAGCCGAAGATCGACGGGTCAACATCGGAACCAAGTTGGGGAGAAGCCATGGATATCGACAATCAAGGGCAACCAGAAGAAAACTGGAAGAGCCCTTTGATCAAATGTTTGAAAGATGGGATCCTGCCTACTGA

Coding sequence (CDS)

ATGAATCCTGATGAGAGCCATCGGTGCTTCGAAGAGAAGAGCCTGAAAGAAGCGGCTGATCACTTAGATGAGGCAAGACCGAGCCCTGATCGTCAACTTAATCCGACCACCCTTGACGGGGGAGAACCAGTGTCGGGCCTGAATAAAGCGACAGACCTCTCGGGAAAGGCGAGGCCGAGCCCTGGTTATCGACTTAATCCGACCACCCTTGATAAGGGAGAACCAGTGGCGGGCCTGATTAAAGCGACAGATCTTTCGGGAGAGGCAAGGCCGAGCCCTGGTCATCGACTTAATTCGACCACCCTTGACAGGGGAGAACCGGCTGAAGAGGTAGAATCTGTCCCTCTGACAGCCGAAGATCGACGGGTCAACATCGGAACCAAGTTGGGGAGAAGCCATGGATATCGACAATCAAGGGCAACCAGAAGAAAACTGGAAGAGCCCTTTGATCAAATGTTTGAAAGATGGGATCCTGCCTACTGA

Protein sequence

MNPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSPGYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRRVNIGTKLGRSHGYRQSRATRRKLEEPFDQMFERWDPAY

Homology

[Close]

BLAST of Moc11g03560 vs. NCBI nr
Match: XP_022156571.1 (uncharacterized protein LOC111023448 [Momordica charantia])

HSP 1 Score: 256.9 bits (655), Expect = 1.1e-64
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MNPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPS 60
           MNPDESHRCFEEKSLK+AADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPS
Sbjct: 1   MNPDESHRCFEEKSLKKAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPS 60

Query: 61  PGYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAED 120
           PGYRLNPTTLDKG PVAGLIKATDLSG+ARPSPGHRLNSTTLDRGEPAEEVESVPLTAED
Sbjct: 61  PGYRLNPTTLDKGGPVAGLIKATDLSGDARPSPGHRLNSTTLDRGEPAEEVESVPLTAED 120

Query: 121 RRVNIGTKLG 131
           RRVNIGTKLG
Sbjct: 121 RRVNIGTKLG 130

[Close]

BLAST of Moc11g03560 vs. NCBI nr
Match: XP_022156048.1 (uncharacterized protein LOC111023016 [Momordica charantia])

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-18
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 73  GEPVAGLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRRVNIGTKLG 131
           GEPV GL KATDLSGEARPSPGHRLNSTTLDRG  AEEVESVPLT E++RVNIGTKLG
Sbjct: 33  GEPVTGLNKATDLSGEARPSPGHRLNSTTLDRGGSAEEVESVPLTVEEQRVNIGTKLG 90

[Close]

BLAST of Moc11g03560 vs. NCBI nr
Match: XP_022158042.1 (uncharacterized protein LOC111024621 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-15
Identity = 58/129 (44.96%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 2   NPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSP 61
           NP E  +CFEE+SL+ AA+ L E  PSPD Q NPTT D GEPV G+              
Sbjct: 7   NP-EGQQCFEEESLEVAANGLGEICPSPDHQPNPTTFDKGEPVGGVESI----------- 66

Query: 62  GYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDR 121
                        P+    +A D  GE   SP    + T  DRGEP +EVES+PLT++DR
Sbjct: 67  -------------PLTPGDRAVDGLGEICSSPDQLPSPTIFDRGEPTKEVESIPLTSDDR 110

Query: 122 RVNIGTKLG 131
           RVNIGT+LG
Sbjct: 127 RVNIGTRLG 110

[Close]

BLAST of Moc11g03560 vs. ExPASy TrEMBL
Match: A0A6J1DVC6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.5e-65
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MNPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPS 60
           MNPDESHRCFEEKSLK+AADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPS
Sbjct: 1   MNPDESHRCFEEKSLKKAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPS 60

Query: 61  PGYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAED 120
           PGYRLNPTTLDKG PVAGLIKATDLSG+ARPSPGHRLNSTTLDRGEPAEEVESVPLTAED
Sbjct: 61  PGYRLNPTTLDKGGPVAGLIKATDLSGDARPSPGHRLNSTTLDRGEPAEEVESVPLTAED 120

Query: 121 RRVNIGTKLG 131
           RRVNIGTKLG
Sbjct: 121 RRVNIGTKLG 130

[Close]

BLAST of Moc11g03560 vs. ExPASy TrEMBL
Match: A0A6J1DPJ5 (uncharacterized protein LOC111023016 OS=Momordica charantia OX=3673 GN=LOC111023016 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.7e-18
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 73  GEPVAGLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRRVNIGTKLG 131
           GEPV GL KATDLSGEARPSPGHRLNSTTLDRG  AEEVESVPLT E++RVNIGTKLG
Sbjct: 33  GEPVTGLNKATDLSGEARPSPGHRLNSTTLDRGGSAEEVESVPLTVEEQRVNIGTKLG 90

[Close]

BLAST of Moc11g03560 vs. ExPASy TrEMBL
Match: A0A6J1DW49 (uncharacterized protein LOC111024621 OS=Momordica charantia OX=3673 GN=LOC111024621 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 8.1e-16
Identity = 58/129 (44.96%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 2   NPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSP 61
           NP E  +CFEE+SL+ AA+ L E  PSPD Q NPTT D GEPV G+              
Sbjct: 7   NP-EGQQCFEEESLEVAANGLGEICPSPDHQPNPTTFDKGEPVGGVESI----------- 66

Query: 62  GYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDR 121
                        P+    +A D  GE   SP    + T  DRGEP +EVES+PLT++DR
Sbjct: 67  -------------PLTPGDRAVDGLGEICSSPDQLPSPTIFDRGEPTKEVESIPLTSDDR 110

Query: 122 RVNIGTKLG 131
           RVNIGT+LG
Sbjct: 127 RVNIGTRLG 110

The following BLAST results are available for this feature:

BLAST of Moc11g03560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156571.1	1.1e-64	97.69	uncharacterized protein LOC111023448 [Momordica charantia]	[more]
XP_022156048.1	3.6e-18	87.93	uncharacterized protein LOC111023016 [Momordica charantia]	[more]
XP_022158042.1	1.7e-15	44.96	uncharacterized protein LOC111024621 [Momordica charantia]	[more]

BLAST of Moc11g03560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g03560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVC6	5.5e-65	97.69	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1	[more]
A0A6J1DPJ5	1.7e-18	87.93	uncharacterized protein LOC111023016 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DW49	8.1e-16	44.96	uncharacterized protein LOC111024621 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Moc11g03560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g03560.1	Moc11g03560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity