Moc11g03360 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g03360
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr11: 2146848 .. 2147675 (-)
RNA-Seq Expression	Moc11g03360
Synteny	Moc11g03360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGTAGTCAAGTACTATGAACTGTACAAAATTCAGCAATGCACATCATGCATTGGGCCGGAAGCCCACTTGAAGCATAAAGTTGTCAAAAGTTTCTTTTTTCAAACTTCGAGTTCGCATTGTACACGAACCACATGTCTAATAATTGCAAGAACTGGAAAAGGGTACATTGAAAAACATCAAATATACCCTATTGTCGTGGAGCTTCCCTGCATTGTAAAAAGTTCTCTGAAGGGCAAATGGGCTGTTTTCCAAATTCTCTTGCTCCAACTCGAAGAGGGAAAAGACAGAAAAGAGGGAAGATCAATATGCTACAAAATGCTTTTTTACGTAGCCTTAAAAGTGACCCTCTGGCTGCAGAGGTTGAAGGGACTGAAAGCTAGAAAGAAAGGCAAAATGGAAGAAAGAATATTTAAAAGGGCTTCTGCTGAAAAGGAAAAGTGGCCTCGTCTCGTCTGTTGTGTTGCCTGTTTTGCAGGTTGTCTACTCGATTGCATTTTACTCTTACACTTTCCCTTTATCCTTCTTCTACACCGCCCTGCCATACATACAAAGCCATCTCACTTTTTCCCTCCATTCGGACACCTTTCTCTCCAAACTTTCCCTCAGTCTCTCCATGGAAGCTCGGCTGCTTCTGTTAATGGCGGTTTTCACTCTTCTGGTCTCCGGGGAAAACCAACAGACAATGGGGGTCGTCGTCGATATGCAAGGTCGCCACCGGAAGCAGCTGCCGTCGCCACCATCGCCGCAGCCGTGGAAGCACTCATTCAATGCGCTGTTTTCAAGCAAGAGGAGGGTCCCAAACACATCGGATCCACTCCATAA

mRNA sequence

ATGTGTGTAGTCAAGTACTATGAACTGTACAAAATTCAGCAATGCACATCATGCATTGGGCCGGAAGCCCACTTGAAGCATAAAGTTGTCAAAAGTTTCTTTTTTCAAACTTCGAGTTCGCATTGTACACGAACCACATGTCTAATAATTGCAAGAACTGGAAAAGGGTACATTGAAAAACATCAAATATACCCTATTGTCGTGGAGCTTCCCTGCATTGTAAAAAGTTCTCTGAAGGGCAAATGGGCTGTTTTCCAAATTCTCTTGCTCCAACTCGAAGAGGGAAAAGACAGAAAAGAGGGAAGATCAATATGCTACAAAATGCTTTTTTACGTAGCCTTAAAAGTGACCCTCTGGCTGCAGAGGTTGAAGGGACTGAAAGCTAGAAAGAAAGGCAAAATGGAAGAAAGAATATTTAAAAGGGCTTCTGCTGAAAAGGAAAAGTGGCCTCGTCTCGTCTGTTGTGTTGCCTGTTTTGCAGGTTGTCTACTCGATTGCATTTTACTCTTACACTTTCCCTTTATCCTTCTTCTACACCGCCCTGCCATACATACAAAGCCATCTCACTTTTTCCCTCCATTCGGACACCTTTCTCTCCAAACTTTCCCTCAGTCTCTCCATGGAAGCTCGGCTGCTTCTGTTAATGGCGGTTTTCACTCTTCTGGTCTCCGGGGAAAACCAACAGACAATGGGGGTCGTCGTCGATATGCAAGGTCGCCACCGGAAGCAGCTGCCGTCGCCACCATCGCCGCAGCCGTGGAAGCACTCATTCAATGCGCTGTTTTCAAGCAAGAGGAGGGTCCCAAACACATCGGATCCACTCCATAA

Coding sequence (CDS)

ATGTGTGTAGTCAAGTACTATGAACTGTACAAAATTCAGCAATGCACATCATGCATTGGGCCGGAAGCCCACTTGAAGCATAAAGTTGTCAAAAGTTTCTTTTTTCAAACTTCGAGTTCGCATTGTACACGAACCACATGTCTAATAATTGCAAGAACTGGAAAAGGGTACATTGAAAAACATCAAATATACCCTATTGTCGTGGAGCTTCCCTGCATTGTAAAAAGTTCTCTGAAGGGCAAATGGGCTGTTTTCCAAATTCTCTTGCTCCAACTCGAAGAGGGAAAAGACAGAAAAGAGGGAAGATCAATATGCTACAAAATGCTTTTTTACGTAGCCTTAAAAGTGACCCTCTGGCTGCAGAGGTTGAAGGGACTGAAAGCTAGAAAGAAAGGCAAAATGGAAGAAAGAATATTTAAAAGGGCTTCTGCTGAAAAGGAAAAGTGGCCTCGTCTCGTCTGTTGTGTTGCCTGTTTTGCAGGTTGTCTACTCGATTGCATTTTACTCTTACACTTTCCCTTTATCCTTCTTCTACACCGCCCTGCCATACATACAAAGCCATCTCACTTTTTCCCTCCATTCGGACACCTTTCTCTCCAAACTTTCCCTCAGTCTCTCCATGGAAGCTCGGCTGCTTCTGTTAATGGCGGTTTTCACTCTTCTGGTCTCCGGGGAAAACCAACAGACAATGGGGGTCGTCGTCGATATGCAAGGTCGCCACCGGAAGCAGCTGCCGTCGCCACCATCGCCGCAGCCGTGGAAGCACTCATTCAATGCGCTGTTTTCAAGCAAGAGGAGGGTCCCAAACACATCGGATCCACTCCATAA

Protein sequence

MCVVKYYELYKIQQCTSCIGPEAHLKHKVVKSFFFQTSSSHCTRTTCLIIARTGKGYIEKHQIYPIVVELPCIVKSSLKGKWAVFQILLLQLEEGKDRKEGRSICYKMLFYVALKVTLWLQRLKGLKARKKGKMEERIFKRASAEKEKWPRLVCCVACFAGCLLDCILLLHFPFILLLHRPAIHTKPSHFFPPFGHLSLQTFPQSLHGSSAASVNGGFHSSGLRGKPTDNGGRRRYARSPPEAAAVATIAAAVEALIQCAVFKQEEGPKHIGSTP

Homology

[Close]

BLAST of Moc11g03360 vs. NCBI nr
Match: KAG6591407.1 (Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 5.2e-17
Identity = 70/160 (43.75%), Postives = 91/160 (56.88%), Query Frame = 0


Query: 123 LKGLKARKKGKMEERIFKRASAEKEKWPRLVCCVACFAGCLLDCILLLHFPFILLLHRPA 182
           LKGLKARKK  MEE I KR + +++            +G +   ++L    ++       
Sbjct: 482 LKGLKARKKSTMEEGILKRLALKRK------------SGLVSSAVVLFCSNWV------- 541

Query: 183 IHTKPSHFFPPFGHLSLQTFPQSLHGSSAASVNGGFHSSGLRGKPTDNGGRR-------R 242
                S    PF H        +LHGSSAASVNGGFHSSGL GK + NGGRR       +
Sbjct: 542 -----SSPVSPFQHAI-----STLHGSSAASVNGGFHSSGLWGKQSGNGGRRCRPTSTFK 601

Query: 243 YARSPPEAAAVATIAAAVEALIQCAVFKQEEGPKHIGSTP 276
            A   PE AA+A ++AAVE+++QCA+ KQEEG KH+GSTP
Sbjct: 602 CAGESPEEAAIAIVSAAVESVVQCALRKQEEGTKHLGSTP 612

[Close]

BLAST of Moc11g03360 vs. NCBI nr
Match: KAG6608442.1 (Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 3.4e-16
Identity = 66/143 (46.15%), Postives = 77/143 (53.85%), Query Frame = 0


Query: 140 KRASAEKEKWPRLVCCVACFAGCLLDCILLLHFPFILLLHRPAIHTKPSHFFPPFGHLSL 199
           K+ASAEKEKWPRLVCCVA                                     G  + 
Sbjct: 534 KKASAEKEKWPRLVCCVA-------------------------------------GLAAE 593

Query: 200 QTFPQSLHGSSAASVNGGFHSSGLRGKPTDNGGRR-------RYARSPPEAAAVATIAAA 259
           +T  +++ GSSAASVNG F SSGLR K  DNGGRR       + A   PEAAAV    AA
Sbjct: 594 KTIVKNVRGSSAASVNGDFLSSGLRRKQRDNGGRRHPSTSTVKNAGEAPEAAAV----AA 635

Query: 260 VEALIQCAVFKQEEGPKHIGSTP 276
           +E LIQCA+ +QEEGPKH GS+P
Sbjct: 654 METLIQCALCQQEEGPKHFGSSP 635

[Close]

BLAST of Moc11g03360 vs. NCBI nr
Match: KAG7037778.1 (hypothetical protein SDJN02_01409, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.0 bits (188), Expect = 2.8e-10
Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 205 SLHGSSAASVNGGFHSSGLRGKPTDNGGRR-------RYARSPPEAAAVATIAAAVEALI 264
           ++ GSSAASVNG F SSGLR K  DNGGRR       + A   PEAAAV    AA+E LI
Sbjct: 34  TVRGSSAASVNGDFLSSGLRRKQRDNGGRRHPSTSTVKNAGEAPEAAAV----AAMETLI 93

Query: 265 QCAVFKQEEGPKHIGSTP 276
           QCA+ +QEEGPKH GS+P
Sbjct: 94  QCALCQQEEGPKHFGSSP 107

The following BLAST results are available for this feature:

BLAST of Moc11g03360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591407.1	5.2e-17	43.75	Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6608442.1	3.4e-16	46.15	Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7037778.1	2.8e-10	60.26	hypothetical protein SDJN02_01409, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Moc11g03360 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g03360 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g03360 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..237

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g03360.1	Moc11g03360.1	mRNA