Moc11g00890 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g00890
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein
Location	chr11: 570414 .. 571311 (-)
RNA-Seq Expression	Moc11g00890
Synteny	Moc11g00890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGCAGAGCGATGATAAATTGAAATCCAGCAGGAATGACGAAGAGAAAGTCGTAGATTACCACAGCAACAACGTGAAGAAAGTTAGGTTAAATTCAACTCTTGCCGCGCTGCTCGACGATCCTATTCTCGCCGATGTCCCCAAGAATCCGACCTTGTCCGACGTCGATACGCTCATCAGCCTCGAATTGGGCAGCGCCATGCGCATCTCCGTCCTCAAGCTCGACGGCGCCGCCATTGGTACGCGCACATCTCTTCTCCCCTCCCTCTTTCTCTGTCTGGCATTTTTACAAACACTTTGGTGTATGAACTTTTGAAACTCGATCGCGATCTTGTTCGTGCTGAAGATGTGGCGATCATGAACTCCGCGACACTGAAGGACTTGAAGCTTACCATCAAGAAGAAAGTAAACGACATGGAGCAGTCCAAGATGGGGCATCGCCACATTTCATGGTGCTCTTTCTCGATCCTTCGTAAATTCAACCATAAAAAAGAAACGATTCGTTGAAATCTTCCTGAGCTAGTTGTTTGATGTTCACCGTGCACTGATTAGAAGTCTTTCTCTTTTGGATCTGCAGGAAGCATGTGTGGGAAAATTTTTGCCTAGCACACCACAACGAGAAGCTTCTGGATGAGGGTTCCGCGCTTCAGGATTTCGGAATCCGCAATAACTCACAGGTTATTTTCTAAACCTTATGTGATTTGATTGTACTTTCACCAGCAGAAATTCGAGTTTAGAAGTTTTATCGAAGCAGAAAATTCAGTGAAAAACAGACTGAAAACAAACTCCTGTTGCAGGTGCATTTTGTTCCATACGTGGCGTCAAAGAATTGCCGAAGGCATTCTCGAAGGAGAAAACACCGTTTCTTTCACGGTCTCAACAAGCGCGCATGA

mRNA sequence

ATGAAGGAGCAGAGCGATGATAAATTGAAATCCAGCAGGAATGACGAAGAGAAAGTCGTAGATTACCACAGCAACAACGTGAAGAAAGTTAGGTTAAATTCAACTCTTGCCGCGCTGCTCGACGATCCTATTCTCGCCGATGTCCCCAAGAATCCGACCTTGTCCGACGTCGATACGCTCATCAGCCTCGAATTGGGCAGCGCCATGCGCATCTCCGTCCTCAAGCTCGACGGCGCCGCCATTGATGTGGCGATCATGAACTCCGCGACACTGAAGGACTTGAAGCTTACCATCAAGAAGAAAGTAAACGACATGGAGCAGTCCAAGATGGGGCATCGCCACATTTCATGGAAGCATGTGTGGGAAAATTTTTGCCTAGCACACCACAACGAGAAGCTTCTGGATGAGGGTTCCGCGCTTCAGGATTTCGGAATCCGCAATAACTCACAGGTGCATTTTGTTCCATACGTGGCGTCAAAGAATTGCCGAAGGCATTCTCGAAGGAGAAAACACCGTTTCTTTCACGGTCTCAACAAGCGCGCATGA

Coding sequence (CDS)

ATGAAGGAGCAGAGCGATGATAAATTGAAATCCAGCAGGAATGACGAAGAGAAAGTCGTAGATTACCACAGCAACAACGTGAAGAAAGTTAGGTTAAATTCAACTCTTGCCGCGCTGCTCGACGATCCTATTCTCGCCGATGTCCCCAAGAATCCGACCTTGTCCGACGTCGATACGCTCATCAGCCTCGAATTGGGCAGCGCCATGCGCATCTCCGTCCTCAAGCTCGACGGCGCCGCCATTGATGTGGCGATCATGAACTCCGCGACACTGAAGGACTTGAAGCTTACCATCAAGAAGAAAGTAAACGACATGGAGCAGTCCAAGATGGGGCATCGCCACATTTCATGGAAGCATGTGTGGGAAAATTTTTGCCTAGCACACCACAACGAGAAGCTTCTGGATGAGGGTTCCGCGCTTCAGGATTTCGGAATCCGCAATAACTCACAGGTGCATTTTGTTCCATACGTGGCGTCAAAGAATTGCCGAAGGCATTCTCGAAGGAGAAAACACCGTTTCTTTCACGGTCTCAACAAGCGCGCATGA

Protein sequence

MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTLISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHVWENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNKRA

Homology

[Close]

BLAST of Moc11g00890 vs. NCBI nr
Match: XP_022140942.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Momordica charantia] >XP_022140949.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Momordica charantia])

HSP 1 Score: 353.2 bits (905), Expect = 1.3e-93
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL 60
           MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL
Sbjct: 1   MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL 60

Query: 61  ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV 120

Query: 121 WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNKR 180
           WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNKR
Sbjct: 121 WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNKR 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of Moc11g00890 vs. NCBI nr
Match: XP_022975482.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 [Cucurbita maxima] >XP_022975488.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 [Cucurbita maxima] >XP_023535849.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535850.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535851.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535852.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535853.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535854.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303.1 bits (775), Expect = 1.6e-78
Identity = 155/179 (86.59%), Postives = 161/179 (89.94%), Query Frame = 0


Query: 1   MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL 60
           MKE  D+ LKSS  +EE VV YHS NVKKVRLNSTL ALLDDPILADVPK PTL DVDTL
Sbjct: 1   MKEDGDESLKSSSKEEENVVGYHSTNVKKVRLNSTLTALLDDPILADVPKKPTLLDVDTL 60

Query: 61  ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDG  IDVAIMNSA+LKDLKL IKKKVN+MEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTIIDVAIMNSASLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNK 180
           W NFCLAHHNEK+LD+ SALQDFGIRNNSQVHFVPYV SKN RRHSRRRKHRFFHGLNK
Sbjct: 121 WANFCLAHHNEKILDDSSALQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNK 179

[Close]

BLAST of Moc11g00890 vs. NCBI nr
Match: KAG6591246.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 303.1 bits (775), Expect = 1.6e-78
Identity = 155/179 (86.59%), Postives = 161/179 (89.94%), Query Frame = 0


Query: 1   MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL 60
           MKE  D+ LKSS  +EE VV YHS NVKKVRLNSTL ALLDDPILADVPK PTL DVDTL
Sbjct: 13  MKEDGDESLKSSSKEEENVVGYHSTNVKKVRLNSTLTALLDDPILADVPKKPTLLDVDTL 72

Query: 61  ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDG  IDVAIMNSA+LKDLKL IKKKVN+MEQSKMGHRHISWKHV
Sbjct: 73  ISLELGSAMRISVLKLDGTIIDVAIMNSASLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 132

Query: 121 WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNK 180
           W NFCLAHHNEK+LD+ SALQDFGIRNNSQVHFVPYV SKN RRHSRRRKHRFFHGLNK
Sbjct: 133 WANFCLAHHNEKILDDSSALQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNK 191

[Close]

BLAST of Moc11g00890 vs. NCBI nr
Match: XP_038898960.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Benincasa hispida] >XP_038898961.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Benincasa hispida])

HSP 1 Score: 302.8 bits (774), Expect = 2.0e-78
Identity = 158/181 (87.29%), Postives = 162/181 (89.50%), Query Frame = 0


Query: 1   MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL 60
           MKE  D+    S+ DEE VV YHSNNVKKVRLNSTLAALLDDPILADVPKNPTLS VDTL
Sbjct: 1   MKEDGDE----SKKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDG AIDV IMNSATLKDLKL IKKKVNDMEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNDMEQSKMGHRHISWKHV 120

Query: 121 WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNKR 180
           W NFCLAHHNEK+LD+ S LQDFGIRNNSQVHFVPYV SKN RRHSRRRKHRFFHGLNK 
Sbjct: 121 WANFCLAHHNEKILDDNSVLQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNKC 177

Query: 181 A 182
           A
Sbjct: 181 A 177

[Close]

BLAST of Moc11g00890 vs. NCBI nr
Match: XP_022936297.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cucurbita moschata] >XP_022936298.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cucurbita moschata])

HSP 1 Score: 300.4 bits (768), Expect = 1.0e-77
Identity = 155/179 (86.59%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL 60
           MKE  D  LKSS  +EE VV YHS NVKKVRLNSTL ALLDDPILADVPK PTL DVDTL
Sbjct: 1   MKEDGDVSLKSSSKEEENVVGYHSTNVKKVRLNSTLTALLDDPILADVPKKPTLLDVDTL 60

Query: 61  ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDG  IDVAIMNSA LKDLKL IKKKVN+MEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTIIDVAIMNSALLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNK 180
           W NFCLAHHNEK+LD+ SALQDFGIRNNSQVHFVPYV SKN RRHSRRRKHRFFHGLNK
Sbjct: 121 WANFCLAHHNEKILDDSSALQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNK 179

[Close]

BLAST of Moc11g00890 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.7e-56
Identity = 108/152 (71.05%), Postives = 129/152 (84.87%), Query Frame = 0


Query: 28  KKVRLNSTLAALLDDPILADVPKNPTLSDVDTLISLELGSAMRISVLKLDGAAIDVAIMN 87
           K+ +L S L+ LL DPILADVP+NPTLSDV TL+SLE GSAMR+SV+KLDG+++DVA+MN
Sbjct: 11  KREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKLDGSSLDVAVMN 70

Query: 88  SATLKDLKLTIKKKVNDMEQSKMGHRHISWKHVWENFCLAHHNEKLLDEGSALQDFGIRN 147
           SATLKDLKL IKKKVN+MEQ+ MGHRHISWKHVW NFCL+ +NEKLLD+ + LQD GIRN
Sbjct: 71  SATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVLQDVGIRN 130

Query: 148 NSQVHFVPYVASKNCRRHSRRRKHRFFHGLNK 180
           NSQV F+PYV  K   RHS+R+KHR F  L+K
Sbjct: 131 NSQVTFMPYVMKKGRGRHSKRKKHRLFRSLHK 162

[Close]

BLAST of Moc11g00890 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.5e-20
Identity = 49/125 (39.20%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 36  LAALLDDPILADVPKNPTLSDVDTLISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLK 95
           LA ++ DP+L D+P   TL +V++ I+LE G AM + V K+DG  + V ++ SAT+ DLK
Sbjct: 8   LAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATVLDLK 67

Query: 96  LTIKKKVNDMEQSKMGHRHISWKHVWENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVP 155
             I++ V   ++ + G +HISW +VW  + L    EKL ++   L+D+GIRN  +V F+ 
Sbjct: 68  KAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIK 127

Query: 156 YVASK 161
            +  K
Sbjct: 128 KLRQK 132

[Close]

BLAST of Moc11g00890 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 6.5e-19
Identity = 46/122 (37.70%), Postives = 76/122 (62.30%), Query Frame = 0


Query: 39  LLDDPILADVPKNPTLSDVDTLISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTI 98
           ++ DP+L D+P   TL +V++ I+LE G AM + V K+DG  + V ++ +AT+ DLK  I
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 99  KKKVNDMEQSKMGHRHISWKHVWENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVA 158
           ++ V   ++ + G +HISW +VW  + L    EKL ++   L+D+GIRN  +V F+  + 
Sbjct: 62  QRYVQLRQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLR 121

Query: 159 SK 161
            K
Sbjct: 122 QK 123

[Close]

BLAST of Moc11g00890 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.5e-19
Identity = 46/122 (37.70%), Postives = 76/122 (62.30%), Query Frame = 0


Query: 39  LLDDPILADVPKNPTLSDVDTLISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTI 98
           ++ DP+L D+P   TL +V++ I+LE G AM + V K+DG  + V ++ +AT+ DLK  I
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 99  KKKVNDMEQSKMGHRHISWKHVWENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVA 158
           ++ V   ++ + G +HISW +VW  + L    EKL ++   L+D+GIRN  +V F+  + 
Sbjct: 62  QRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLR 121

Query: 159 SK 161
            K
Sbjct: 122 QK 123

[Close]

BLAST of Moc11g00890 vs. ExPASy TrEMBL
Match: A0A6J1CH74 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Momordica charantia OX=3673 GN=LOC111011478 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 6.4e-94
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL 60
           MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL
Sbjct: 1   MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL 60

Query: 61  ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV 120

Query: 121 WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNKR 180
           WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNKR
Sbjct: 121 WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNKR 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of Moc11g00890 vs. ExPASy TrEMBL
Match: A0A6J1IJC5 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111474833 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 7.6e-79
Identity = 155/179 (86.59%), Postives = 161/179 (89.94%), Query Frame = 0


Query: 1   MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL 60
           MKE  D+ LKSS  +EE VV YHS NVKKVRLNSTL ALLDDPILADVPK PTL DVDTL
Sbjct: 1   MKEDGDESLKSSSKEEENVVGYHSTNVKKVRLNSTLTALLDDPILADVPKKPTLLDVDTL 60

Query: 61  ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDG  IDVAIMNSA+LKDLKL IKKKVN+MEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTIIDVAIMNSASLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNK 180
           W NFCLAHHNEK+LD+ SALQDFGIRNNSQVHFVPYV SKN RRHSRRRKHRFFHGLNK
Sbjct: 121 WANFCLAHHNEKILDDSSALQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNK 179

[Close]

BLAST of Moc11g00890 vs. ExPASy TrEMBL
Match: A0A6J1F820 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442960 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.9e-78
Identity = 155/179 (86.59%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL 60
           MKE  D  LKSS  +EE VV YHS NVKKVRLNSTL ALLDDPILADVPK PTL DVDTL
Sbjct: 1   MKEDGDVSLKSSSKEEENVVGYHSTNVKKVRLNSTLTALLDDPILADVPKKPTLLDVDTL 60

Query: 61  ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDG  IDVAIMNSA LKDLKL IKKKVN+MEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTIIDVAIMNSALLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNK 180
           W NFCLAHHNEK+LD+ SALQDFGIRNNSQVHFVPYV SKN RRHSRRRKHRFFHGLNK
Sbjct: 121 WANFCLAHHNEKILDDSSALQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNK 179

[Close]

BLAST of Moc11g00890 vs. ExPASy TrEMBL
Match: A0A6J1F7W6 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442960 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.9e-78
Identity = 155/179 (86.59%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL 60
           MKE  D  LKSS  +EE VV YHS NVKKVRLNSTL ALLDDPILADVPK PTL DVDTL
Sbjct: 13  MKEDGDVSLKSSSKEEENVVGYHSTNVKKVRLNSTLTALLDDPILADVPKKPTLLDVDTL 72

Query: 61  ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDG  IDVAIMNSA LKDLKL IKKKVN+MEQSKMGHRHISWKHV
Sbjct: 73  ISLELGSAMRISVLKLDGTIIDVAIMNSALLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 132

Query: 121 WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNK 180
           W NFCLAHHNEK+LD+ SALQDFGIRNNSQVHFVPYV SKN RRHSRRRKHRFFHGLNK
Sbjct: 133 WANFCLAHHNEKILDDSSALQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNK 191

[Close]

BLAST of Moc11g00890 vs. ExPASy TrEMBL
Match: A0A5A7VCB2 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00890 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.4e-77
Identity = 153/181 (84.53%), Postives = 159/181 (87.85%), Query Frame = 0


Query: 1   MKEQSDDKLKSSRNDEEKVVDYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSDVDTL 60
           MKE  D  +KS   DEE VV YHSNNVKKVRLNSTLAALLDDPILADVPKNPTLS VDTL
Sbjct: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDG AIDV IMNSATLKDLKL IK+KVN+ EQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120

Query: 121 WENFCLAHHNEKLLDEGSALQDFGIRNNSQVHFVPYVASKNCRRHSRRRKHRFFHGLNKR 180
           W NFCLAHHNEK+LD+ S LQDFGIRNNSQV F+PYV SKN R HSRRRKHRFFHGLNK 
Sbjct: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of Moc11g00890 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 218.0 bits (554), Expect = 6.2e-57
Identity = 108/152 (71.05%), Postives = 129/152 (84.87%), Query Frame = 0


Query: 28  KKVRLNSTLAALLDDPILADVPKNPTLSDVDTLISLELGSAMRISVLKLDGAAIDVAIMN 87
           K+ +L S L+ LL DPILADVP+NPTLSDV TL+SLE GSAMR+SV+KLDG+++DVA+MN
Sbjct: 11  KREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKLDGSSLDVAVMN 70

Query: 88  SATLKDLKLTIKKKVNDMEQSKMGHRHISWKHVWENFCLAHHNEKLLDEGSALQDFGIRN 147
           SATLKDLKL IKKKVN+MEQ+ MGHRHISWKHVW NFCL+ +NEKLLD+ + LQD GIRN
Sbjct: 71  SATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVLQDVGIRN 130

Query: 148 NSQVHFVPYVASKNCRRHSRRRKHRFFHGLNK 180
           NSQV F+PYV  K   RHS+R+KHR F  L+K
Sbjct: 131 NSQVTFMPYVMKKGRGRHSKRKKHRLFRSLHK 162

[Close]

BLAST of Moc11g00890 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 29/91 (31.87%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 69  MRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHVWENFCLAH 128
           ++++VLKLDG++  + ++ +AT+ +LK+ ++   + +  S  G   ISW HVW  FCL++
Sbjct: 38  IKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPIS--GPGKISWPHVWGQFCLSY 97

Query: 129 HNEKLLDEGSALQDFGIRNNSQVHFVPYVAS 160
            +++L++E   L +FGI++  Q+ F+ ++++
Sbjct: 98  EDKRLINESEYLTEFGIKDGDQLRFIRHISN 126

[Close]

BLAST of Moc11g00890 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-12
Identity = 38/106 (35.85%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 69  MRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHVWENFCLAH 128
           +R+SVLKLDG++ DV ++ SAT+ DLK+ I+   + +   K G   ISW HVW +FCL  
Sbjct: 19  IRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHV--PKKGPSKISWSHVWGHFCLCF 78

Query: 129 HNEKLLDEGSALQDFGIRNNSQVHFVPYVA-----SKNCRRHSRRR 170
             +KL+ +   + ++G+++  +V F  +V+     SK   R S+++
Sbjct: 79  GGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKGYSRKSKQK 122

[Close]

BLAST of Moc11g00890 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 8.8e-11
Identity = 29/91 (31.87%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 69  MRISVLKLDGAAIDVAIMNSATLKDLKLTIKKKVNDMEQSKMGHRHISWKHVWENFCLAH 128
           ++++VLKLDG++    ++ +AT+ +LK+ ++   + +  S  G   ISW HVW  FCL++
Sbjct: 6   IKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPIS--GPGKISWPHVWGQFCLSY 65

Query: 129 HNEKLLDEGSALQDFGIRNNSQVHFVPYVAS 160
            +++L++E   L +FGI++  Q+ F+ ++++
Sbjct: 66  EDKRLINESEYLTEFGIKDGDQLRFIRHISN 91

[Close]

BLAST of Moc11g00890 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-09
Identity = 37/148 (25.00%), Postives = 81/148 (54.73%), Query Frame = 0


Query: 27  VKKVRLNSTLAALLDDPILADVPKNPTLS---DVDTLISLELGSAMRISVLKLDGAAIDV 86
           V+  R +  L +L+D   L+    N   S      + + L     +++SV+KL+G+  DV
Sbjct: 8   VRDGRRSGGLRSLIDPRFLSSFALNDGGSISGRRSSYLKLPPQGRIKLSVVKLNGSLFDV 67

Query: 87  AIMNSATLKDLKLTIKK--KVNDMEQSKMGHRHISWKHVWENFCLAHHNEKLLDEGSALQ 146
            +    ++ +LK  +++   ++ +E    GH  ISW HVW +FCL + +++L+++ ++++
Sbjct: 68  EVAKDCSVAELKRAVEQVFTISPLE----GHGMISWSHVWGHFCLCYRDQRLVNDKTSIR 127

Query: 147 DFGIRNNSQVHFVPYVASKNCRRHSRRR 170
             G+ +  Q+HFV +++  +   + R +
Sbjct: 128 YLGLNDGDQLHFVRHLSIDHSPMNKRSK 151

The following BLAST results are available for this feature:

BLAST of Moc11g00890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140942.1	1.3e-93	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Momordica charantia] >XP...	[more]
XP_022975482.1	1.6e-78	86.59	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 [Cucurbita max...	[more]
KAG6591246.1	1.6e-78	86.59	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyr...	[more]
XP_038898960.1	2.0e-78	87.29	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Benincasa hispida] >XP_0...	[more]
XP_022936297.1	1.0e-77	86.59	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cucurbita mos...	[more]

BLAST of Moc11g00890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	8.7e-56	71.05	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q9BV90	3.5e-20	39.20	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q3ZBQ4	6.5e-19	37.70	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]
Q8VIK1	6.5e-19	37.70	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]

BLAST of Moc11g00890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CH74	6.4e-94	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Momordica charantia OX...	[more]
A0A6J1IJC5	7.6e-79	86.59	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 OS=Cucurbita m...	[more]
A0A6J1F820	4.9e-78	86.59	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucurbita m...	[more]
A0A6J1F7W6	4.9e-78	86.59	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X1 OS=Cucurbita m...	[more]
A0A5A7VCB2	5.4e-77	84.53	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Cucumis melo var. maku...	[more]

BLAST of Moc11g00890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07860.1	6.2e-57	71.05	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	1.6e-12	31.87	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	2.7e-12	35.85	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	8.8e-11	31.87	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	1.7e-09	25.00	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 62..165 e-value: 1.1E-35 score: 123.5
None	No IPR available	PANTHER	PTHR14942:SF0	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 14..179
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 69..156 e-value: 1.9E-28 score: 98.3
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 68..154 e-value: 5.95977E-35 score: 116.078
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 14..179
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 64..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g00890.1	Moc11g00890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0043295	glutathione binding
molecular_function	GO:0004364	glutathione transferase activity