Moc11g00410 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g00410
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	DNA helicase
Location	chr11: 277648 .. 278047 (-)
RNA-Seq Expression	Moc11g00410
Synteny	Moc11g00410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGATGAAAGGAGAGCCGCTGGTGAGGAAGCTGGCCGTGCTCGCCAAGTACGTTGTTCTTCCGGGAGCCATGGTTGCTGCTCTCGTTTACTCTCCTCCTGATTACGCTTACTACAAGAATGGCGATCAGTCATCCAAATAGAACTCTTTCCCCTTCTTCCCCAATTCGGTTCGTCTCGATCTGTCCTCTCTTAGGGTTACAGTTTTACAATTTTACTTGTTATTGTTTTCTCTTCTGAATTGTTGATAGATGATTGATGATTCTTTCTGACTGTTGGATATTTTATGTGATCGTGCTGCTTGCTATTAGATATGTGCTTATTGTGGTCGCAATCAGCAATGTTGTTTTCATGTATCTGATAAACATCGACGACGAAATTGATGCAACTAAGTGA

mRNA sequence

ATGGCGTTGATGAAAGGAGAGCCGCTGGTGAGGAAGCTGGCCGTGCTCGCCAAGTACGTTGTTCTTCCGGGAGCCATGGTTGCTGCTCTCGTTTACTCTCCTCCTGATTACGCTTACTACAAGAATGGCGATCAATATGTGCTTATTGTGGTCGCAATCAGCAATGTTGTTTTCATGTATCTGATAAACATCGACGACGAAATTGATGCAACTAAGTGA

Coding sequence (CDS)

ATGGCGTTGATGAAAGGAGAGCCGCTGGTGAGGAAGCTGGCCGTGCTCGCCAAGTACGTTGTTCTTCCGGGAGCCATGGTTGCTGCTCTCGTTTACTCTCCTCCTGATTACGCTTACTACAAGAATGGCGATCAATATGTGCTTATTGTGGTCGCAATCAGCAATGTTGTTTTCATGTATCTGATAAACATCGACGACGAAATTGATGCAACTAAGTGA

Protein sequence

MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQYVLIVVAISNVVFMYLINIDDEIDATK

Homology

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BLAST of Moc11g00410 vs. NCBI nr
Match: KAG7037970.1 (hypothetical protein SDJN02_01603, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQYVLIVVAISNVVFM 60
          MALMKGEPLVRKLAV AKYVVLPGAM AALVYSPPDYAY+KN D +++ V+ +    F+
Sbjct: 1  MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDDTHLMGVLVVDLPSFL 59

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BLAST of Moc11g00410 vs. NCBI nr
Match: PSR99489.1 (DNA helicase [Actinidia chinensis var. chinensis])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQ 46
          M  M+GEPLV KLAVLAKY VLPGAMVAAL+YSPPDYAY K  DQ
Sbjct: 1  MTFMRGEPLVAKLAVLAKYAVLPGAMVAALIYSPPDYAYEKKHDQ 45

[Close]

BLAST of Moc11g00410 vs. NCBI nr
Match: CAB4267529.1 (unnamed protein product [Prunus armeniaca] >CAB4298007.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 70.9 bits (172), Expect = 5.2e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKN 43
          MALM+GEPLV KLAVLAKYVVLPGAMVAAL+YSPPDY   KN
Sbjct: 14 MALMRGEPLVTKLAVLAKYVVLPGAMVAALIYSPPDYTSSKN 55

[Close]

BLAST of Moc11g00410 vs. NCBI nr
Match: KAF4352412.1 (hypothetical protein G4B88_018844 [Cannabis sativa])

HSP 1 Score: 70.5 bits (171), Expect = 6.8e-09
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGD 45
          MA +KGEPL+RKLA+++KY VLPGAM+AALVYSPPD+ YY N +
Sbjct: 37 MAFLKGEPLIRKLALVSKYAVLPGAMIAALVYSPPDFVYYSNNN 80

[Close]

BLAST of Moc11g00410 vs. NCBI nr
Match: KAE8057437.1 (hypothetical protein FH972_014130 [Carpinus fangiana])

HSP 1 Score: 70.1 bits (170), Expect = 8.9e-09
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYA 39
          MALM+GEPLV+KLA+LAKYVVLPGAMVAALVYSPPDYA
Sbjct: 1  MALMRGEPLVKKLALLAKYVVLPGAMVAALVYSPPDYA 38

[Close]

BLAST of Moc11g00410 vs. ExPASy TrEMBL
Match: A0A2R6PZ99 (DNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23464 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.1e-10
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQ 46
          M  M+GEPLV KLAVLAKY VLPGAMVAAL+YSPPDYAY K  DQ
Sbjct: 1  MTFMRGEPLVAKLAVLAKYAVLPGAMVAALIYSPPDYAYEKKHDQ 45

[Close]

BLAST of Moc11g00410 vs. ExPASy TrEMBL
Match: A0A6J5TUT5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10256 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKN 43
          MALM+GEPLV KLAVLAKYVVLPGAMVAAL+YSPPDY   KN
Sbjct: 14 MALMRGEPLVTKLAVLAKYVVLPGAMVAALIYSPPDYTSSKN 55

[Close]

BLAST of Moc11g00410 vs. ExPASy TrEMBL
Match: A0A7J6E203 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018844 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.3e-09
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGD 45
          MA +KGEPL+RKLA+++KY VLPGAM+AALVYSPPD+ YY N +
Sbjct: 37 MAFLKGEPLIRKLALVSKYAVLPGAMIAALVYSPPDFVYYSNNN 80

[Close]

BLAST of Moc11g00410 vs. ExPASy TrEMBL
Match: A0A5N6RC88 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014130 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.3e-09
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYA 39
          MALM+GEPLV+KLA+LAKYVVLPGAMVAALVYSPPDYA
Sbjct: 1  MALMRGEPLVKKLALLAKYVVLPGAMVAALVYSPPDYA 38

[Close]

BLAST of Moc11g00410 vs. ExPASy TrEMBL
Match: A0A0A0L4N8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664390 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-09
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQ 46
          MALMKGEPL+RKLAV A Y+VLPGAM AAL+YSPPDY Y K  ++
Sbjct: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKNEK 45

The following BLAST results are available for this feature:

BLAST of Moc11g00410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037970.1	1.3e-12	71.19	hypothetical protein SDJN02_01603, partial [Cucurbita argyrosperma subsp. argyro...	[more]
PSR99489.1	1.1e-09	80.00	DNA helicase [Actinidia chinensis var. chinensis]	[more]
CAB4267529.1	5.2e-09	85.71	unnamed protein product [Prunus armeniaca] >CAB4298007.1 unnamed protein product...	[more]
KAF4352412.1	6.8e-09	70.45	hypothetical protein G4B88_018844 [Cannabis sativa]	[more]
KAE8057437.1	8.9e-09	92.11	hypothetical protein FH972_014130 [Carpinus fangiana]	[more]

BLAST of Moc11g00410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g00410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2R6PZ99	5.1e-10	80.00	DNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23464 ...	[more]
A0A6J5TUT5	2.5e-09	85.71	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10256 PE=4 S...	[more]
A0A7J6E203	3.3e-09	70.45	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018844 PE=4 SV=1	[more]
A0A5N6RC88	4.3e-09	92.11	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014130 PE=4 SV=1	[more]
A0A0A0L4N8	5.6e-09	73.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664390 PE=4 SV=1	[more]

BLAST of Moc11g00410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g00410.1	Moc11g00410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004386	helicase activity