Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAACAGAAAATAGTCTTACTATTCAATTATTTCATCAATGCTCGAGCCTCATTTCTATTAAGCTCAATTCCAACAACTATCTTCTATGGAAATCTCAGATCCTGCCCCTCATTAGAACTATGGGAATGGAGCAACATCTTACTGATGATCAGCCACCAGAAGAACATGTTGGAAGCACATGTTGGAAGCAGCAAGGAAGACAATATACCATGTGGATAAACAATGATGGTCTCCGGACTTCGTGGCTTTTAGGAACTATCAATGAAGATGTGTTGAGCATGATTGAAAACACAGAAACTGCCTATCAAGTGTGGAGATCATTAGAGGAGCAACTTCTCACAATGACCAAAGAAAACGAGATTCATCTCAACGAGGCGTTACTCAACTTGAAGAAAGGGAATCTCAACCTTGAAGAATATTTGAAGAAATTCAAGGCCCTCACTGACAAATTATCGGCAATGAAGAAGCCCTTAGATGAAACACAAACAATATTTCACTTGGCAAGGGCTTAG
mRNA sequence
ATGGCCAAAACAGAAAATAGTCTTACTATTCAATTATTTCATCAATGCTCGAGCCTCATTTCTATTAAGCTCAATTCCAACAACTATCTTCTATGGAAATCTCAGATCCTGCCCCTCATTAGAACTATGGGAATGGAGCAACATCTTACTGATGATCAGCCACCAGAAGAACATGTTGGAAGCACATGTTGGAAGCAGCAAGGAAGACAATATACCATGTGGATAAACAATGATGGTCTCCGGACTTCGTGGCTTTTAGGAACTATCAATGAAGATGTGTTGAGCATGATTGAAAACACAGAAACTGCCTATCAAGTGTGGAGATCATTAGAGGAGCAACTTCTCACAATGACCAAAGAAAACGAGATTCATCTCAACGAGGCGTTACTCAACTTGAAGAAAGGGAATCTCAACCTTGAAGAATATTTGAAGAAATTCAAGGCCCTCACTGACAAATTATCGGCAATGAAGAAGCCCTTAGATGAAACACAAACAATATTTCACTTGGCAAGGGCTTAG
Coding sequence (CDS)
ATGGCCAAAACAGAAAATAGTCTTACTATTCAATTATTTCATCAATGCTCGAGCCTCATTTCTATTAAGCTCAATTCCAACAACTATCTTCTATGGAAATCTCAGATCCTGCCCCTCATTAGAACTATGGGAATGGAGCAACATCTTACTGATGATCAGCCACCAGAAGAACATGTTGGAAGCACATGTTGGAAGCAGCAAGGAAGACAATATACCATGTGGATAAACAATGATGGTCTCCGGACTTCGTGGCTTTTAGGAACTATCAATGAAGATGTGTTGAGCATGATTGAAAACACAGAAACTGCCTATCAAGTGTGGAGATCATTAGAGGAGCAACTTCTCACAATGACCAAAGAAAACGAGATTCATCTCAACGAGGCGTTACTCAACTTGAAGAAAGGGAATCTCAACCTTGAAGAATATTTGAAGAAATTCAAGGCCCTCACTGACAAATTATCGGCAATGAAGAAGCCCTTAGATGAAACACAAACAATATTTCACTTGGCAAGGGCTTAG
Protein sequence
MAKTENSLTIQLFHQCSSLISIKLNSNNYLLWKSQILPLIRTMGMEQHLTDDQPPEEHVGSTCWKQQGRQYTMWINNDGLRTSWLLGTINEDVLSMIENTETAYQVWRSLEEQLLTMTKENEIHLNEALLNLKKGNLNLEEYLKKFKALTDKLSAMKKPLDETQTIFHLARA
Homology
BLAST of Moc10g27930 vs. NCBI nr
Match:
XP_022154021.1 (uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncharacterized protein LOC111021379 [Momordica charantia])
HSP 1 Score: 220.7 bits (561), Expect = 9.7e-54
Identity = 113/172 (65.70%), Postives = 135/172 (78.49%), Query Frame = 0
Query: 1 MAKTENSLTIQLFHQCSSLISIKLNSNNYLLWKSQILPLIRTMGMEQHLTDDQP-PEEHV 60
MA EN LT+Q FHQCSSLIS+KLNS+NYLLWKSQ+LPLIRT+G+E HL ++ P +E
Sbjct: 1 MALPENLLTVQSFHQCSSLISLKLNSSNYLLWKSQVLPLIRTLGLEHHLXEEAPVVDECK 60
Query: 61 GSTCWKQQGRQYTMWINNDGLRTSWLLGTINEDVLSMIENTETAYQVWRSLEEQLLTMTK 120
G Q WINNDGL TSWLLG I EDVL+++E TETA +VW SLEE LLTMTK
Sbjct: 61 GKEGESAXXTQVRTWINNDGLLTSWLLGIIAEDVLTLLEGTETAKEVWHSLEELLLTMTK 120
Query: 121 ENEIHLNEALLNLKKGNLNLEEYLKKFKALTDKLSAMKKPLDETQTIFHLAR 172
ENEIHLNEALL LKKG+L+++EY++KFK L D+L AMKKPLD+ +FHLAR
Sbjct: 121 ENEIHLNEALLTLKKGSLSMDEYIRKFKNLCDRLXAMKKPLDDLTKVFHLAR 172
BLAST of Moc10g27930 vs. NCBI nr
Match:
RVW19921.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])
HSP 1 Score: 172.6 bits (436), Expect = 3.0e-39
Identity = 84/172 (48.84%), Postives = 123/172 (71.51%), Query Frame = 0
Query: 1 MAKTENSLTIQLFHQCSSLISIKLNSNNYLLWKSQILPLIRTMGMEQHLTDDQ-PPEEHV 60
MA EN L+IQ FHQCSSL+SIKLN +N LLW+SQ+LPL+R++G+ HL++++ EE +
Sbjct: 15 MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 74
Query: 61 GSTCWKQQGRQYTMWINNDGLRTSWLLGTINEDVLSMIENTETAYQVWRSLEEQLLTMTK 120
G+ + + W +NDGL TSWLLG + E+V+ +++ TETAY VW SL E+LL MTK
Sbjct: 75 GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 134
Query: 121 ENEIHLNEALLNLKKGNLNLEEYLKKFKALTDKLSAMKKPLDETQTIFHLAR 172
E E+ L L +KKG +L+EYL++FK + D L+A++KP+ + +F LA+
Sbjct: 135 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQ 186
BLAST of Moc10g27930 vs. NCBI nr
Match:
RVW43526.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 171.0 bits (432), Expect = 8.8e-39
Identity = 83/172 (48.26%), Postives = 123/172 (71.51%), Query Frame = 0
Query: 1 MAKTENSLTIQLFHQCSSLISIKLNSNNYLLWKSQILPLIRTMGMEQHLTDDQ-PPEEHV 60
MA EN L+IQ FHQCSSL+SIKLN +N LLW+SQ+LPL+R++G+ HL++++ +E +
Sbjct: 46 MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASKETM 105
Query: 61 GSTCWKQQGRQYTMWINNDGLRTSWLLGTINEDVLSMIENTETAYQVWRSLEEQLLTMTK 120
G+ + + W +NDGL TSWLLG + E+V+ +++ TETAY VW SL E+LL MTK
Sbjct: 106 GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 165
Query: 121 ENEIHLNEALLNLKKGNLNLEEYLKKFKALTDKLSAMKKPLDETQTIFHLAR 172
E E+ L L +KKG +L+EYL++FK + D L+A++KP+ + +F LA+
Sbjct: 166 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQ 217
BLAST of Moc10g27930 vs. NCBI nr
Match:
RVW93768.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])
HSP 1 Score: 171.0 bits (432), Expect = 8.8e-39
Identity = 83/172 (48.26%), Postives = 123/172 (71.51%), Query Frame = 0
Query: 1 MAKTENSLTIQLFHQCSSLISIKLNSNNYLLWKSQILPLIRTMGMEQHLTDDQ-PPEEHV 60
MA EN L+IQ FHQCSSL+SIKLN +N LLW+SQ+LPL+R++G+ HL++++ EE +
Sbjct: 1 MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 60
Query: 61 GSTCWKQQGRQYTMWINNDGLRTSWLLGTINEDVLSMIENTETAYQVWRSLEEQLLTMTK 120
G+ + + W +NDGL TSWLLG + ++V+ +++ TETAY VW SL E+LL MTK
Sbjct: 61 GTETKETHDQSIETWSHNDGLLTSWLLGLMTKEVMLLLDGTETAYDVWNSLGEKLLPMTK 120
Query: 121 ENEIHLNEALLNLKKGNLNLEEYLKKFKALTDKLSAMKKPLDETQTIFHLAR 172
E E+ L L +KKG +L+EYL++FK + D L+A++KP+ + +F LA+
Sbjct: 121 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQ 172
BLAST of Moc10g27930 vs. NCBI nr
Match:
GAU44375.1 (hypothetical protein TSUD_243070 [Trifolium subterraneum])
HSP 1 Score: 170.6 bits (431), Expect = 1.2e-38
Identity = 87/169 (51.48%), Postives = 120/169 (71.01%), Query Frame = 0
Query: 5 ENSLTIQLFHQCSSLISIKLNSNNYLLWKSQILPLIRTMGMEQHLTDD--QPPEEHVGST 64
E LTIQ FHQCSSLISIKL+++N+LLWKSQILPLIR++G+E H+T D +P +E S+
Sbjct: 13 EPKLTIQSFHQCSSLISIKLSTSNFLLWKSQILPLIRSLGLEHHITADTSKPDDEITDSS 72
Query: 65 CWKQQGRQYTMWINNDGLRTSWLLGTINEDVLSMIENTETAYQVWRSLEEQLLTMTKENE 124
K + WI NDGL TSWLLG + E+ +SMI +TA+ +W SL EQLL T++ E
Sbjct: 73 GTKIKNPDAVQWILNDGLLTSWLLGNMKEETVSMILGGDTAHYIWSSLHEQLLPNTEDGE 132
Query: 125 IHLNEALLNLKKGNLNLEEYLKKFKALTDKLSAMKKPLDETQTIFHLAR 172
L +L L KGNL+L+EY++KFK L DKL+A+ KP+ + +F +++
Sbjct: 133 AQLKNSLYALSKGNLSLDEYIRKFKELCDKLTAIGKPVSDVDKVFQISK 181
BLAST of Moc10g27930 vs. ExPASy TrEMBL
Match:
A0A6J1DMG5 (uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021379 PE=4 SV=1)
HSP 1 Score: 220.7 bits (561), Expect = 4.7e-54
Identity = 113/172 (65.70%), Postives = 135/172 (78.49%), Query Frame = 0
Query: 1 MAKTENSLTIQLFHQCSSLISIKLNSNNYLLWKSQILPLIRTMGMEQHLTDDQP-PEEHV 60
MA EN LT+Q FHQCSSLIS+KLNS+NYLLWKSQ+LPLIRT+G+E HL ++ P +E
Sbjct: 1 MALPENLLTVQSFHQCSSLISLKLNSSNYLLWKSQVLPLIRTLGLEHHLXEEAPVVDECK 60
Query: 61 GSTCWKQQGRQYTMWINNDGLRTSWLLGTINEDVLSMIENTETAYQVWRSLEEQLLTMTK 120
G Q WINNDGL TSWLLG I EDVL+++E TETA +VW SLEE LLTMTK
Sbjct: 61 GKEGESAXXTQVRTWINNDGLLTSWLLGIIAEDVLTLLEGTETAKEVWHSLEELLLTMTK 120
Query: 121 ENEIHLNEALLNLKKGNLNLEEYLKKFKALTDKLSAMKKPLDETQTIFHLAR 172
ENEIHLNEALL LKKG+L+++EY++KFK L D+L AMKKPLD+ +FHLAR
Sbjct: 121 ENEIHLNEALLTLKKGSLSMDEYIRKFKNLCDRLXAMKKPLDDLTKVFHLAR 172
BLAST of Moc10g27930 vs. ExPASy TrEMBL
Match:
A0A438C9J9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1040 PE=4 SV=1)
HSP 1 Score: 172.6 bits (436), Expect = 1.5e-39
Identity = 84/172 (48.84%), Postives = 123/172 (71.51%), Query Frame = 0
Query: 1 MAKTENSLTIQLFHQCSSLISIKLNSNNYLLWKSQILPLIRTMGMEQHLTDDQ-PPEEHV 60
MA EN L+IQ FHQCSSL+SIKLN +N LLW+SQ+LPL+R++G+ HL++++ EE +
Sbjct: 15 MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 74
Query: 61 GSTCWKQQGRQYTMWINNDGLRTSWLLGTINEDVLSMIENTETAYQVWRSLEEQLLTMTK 120
G+ + + W +NDGL TSWLLG + E+V+ +++ TETAY VW SL E+LL MTK
Sbjct: 75 GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 134
Query: 121 ENEIHLNEALLNLKKGNLNLEEYLKKFKALTDKLSAMKKPLDETQTIFHLAR 172
E E+ L L +KKG +L+EYL++FK + D L+A++KP+ + +F LA+
Sbjct: 135 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQ 186
BLAST of Moc10g27930 vs. ExPASy TrEMBL
Match:
A0A438IAM2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3180 PE=4 SV=1)
HSP 1 Score: 171.0 bits (432), Expect = 4.3e-39
Identity = 83/172 (48.26%), Postives = 123/172 (71.51%), Query Frame = 0
Query: 1 MAKTENSLTIQLFHQCSSLISIKLNSNNYLLWKSQILPLIRTMGMEQHLTDDQ-PPEEHV 60
MA EN L+IQ FHQCSSL+SIKLN +N LLW+SQ+LPL+R++G+ HL++++ EE +
Sbjct: 1 MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 60
Query: 61 GSTCWKQQGRQYTMWINNDGLRTSWLLGTINEDVLSMIENTETAYQVWRSLEEQLLTMTK 120
G+ + + W +NDGL TSWLLG + ++V+ +++ TETAY VW SL E+LL MTK
Sbjct: 61 GTETKETHDQSIETWSHNDGLLTSWLLGLMTKEVMLLLDGTETAYDVWNSLGEKLLPMTK 120
Query: 121 ENEIHLNEALLNLKKGNLNLEEYLKKFKALTDKLSAMKKPLDETQTIFHLAR 172
E E+ L L +KKG +L+EYL++FK + D L+A++KP+ + +F LA+
Sbjct: 121 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQ 172
BLAST of Moc10g27930 vs. ExPASy TrEMBL
Match:
A0A438E6Z5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1575 PE=4 SV=1)
HSP 1 Score: 171.0 bits (432), Expect = 4.3e-39
Identity = 83/172 (48.26%), Postives = 123/172 (71.51%), Query Frame = 0
Query: 1 MAKTENSLTIQLFHQCSSLISIKLNSNNYLLWKSQILPLIRTMGMEQHLTDDQ-PPEEHV 60
MA EN L+IQ FHQCSSL+SIKLN +N LLW+SQ+LPL+R++G+ HL++++ +E +
Sbjct: 46 MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASKETM 105
Query: 61 GSTCWKQQGRQYTMWINNDGLRTSWLLGTINEDVLSMIENTETAYQVWRSLEEQLLTMTK 120
G+ + + W +NDGL TSWLLG + E+V+ +++ TETAY VW SL E+LL MTK
Sbjct: 106 GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 165
Query: 121 ENEIHLNEALLNLKKGNLNLEEYLKKFKALTDKLSAMKKPLDETQTIFHLAR 172
E E+ L L +KKG +L+EYL++FK + D L+A++KP+ + +F LA+
Sbjct: 166 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQ 217
BLAST of Moc10g27930 vs. ExPASy TrEMBL
Match:
A0A2Z6P7T0 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_243070 PE=4 SV=1)
HSP 1 Score: 170.6 bits (431), Expect = 5.6e-39
Identity = 87/169 (51.48%), Postives = 120/169 (71.01%), Query Frame = 0
Query: 5 ENSLTIQLFHQCSSLISIKLNSNNYLLWKSQILPLIRTMGMEQHLTDD--QPPEEHVGST 64
E LTIQ FHQCSSLISIKL+++N+LLWKSQILPLIR++G+E H+T D +P +E S+
Sbjct: 13 EPKLTIQSFHQCSSLISIKLSTSNFLLWKSQILPLIRSLGLEHHITADTSKPDDEITDSS 72
Query: 65 CWKQQGRQYTMWINNDGLRTSWLLGTINEDVLSMIENTETAYQVWRSLEEQLLTMTKENE 124
K + WI NDGL TSWLLG + E+ +SMI +TA+ +W SL EQLL T++ E
Sbjct: 73 GTKIKNPDAVQWILNDGLLTSWLLGNMKEETVSMILGGDTAHYIWSSLHEQLLPNTEDGE 132
Query: 125 IHLNEALLNLKKGNLNLEEYLKKFKALTDKLSAMKKPLDETQTIFHLAR 172
L +L L KGNL+L+EY++KFK L DKL+A+ KP+ + +F +++
Sbjct: 133 AQLKNSLYALSKGNLSLDEYIRKFKELCDKLTAIGKPVSDVDKVFQISK 181
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022154021.1 | 9.7e-54 | 65.70 | uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncha... | [more] |
| RVW19921.1 | 3.0e-39 | 48.84 | Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | [more] |
| RVW43526.1 | 8.8e-39 | 48.26 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
| RVW93768.1 | 8.8e-39 | 48.26 | Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | [more] |
| GAU44375.1 | 1.2e-38 | 51.48 | hypothetical protein TSUD_243070 [Trifolium subterraneum] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1DMG5 | 4.7e-54 | 65.70 | uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021... | [more] |
| A0A438C9J9 | 1.5e-39 | 48.84 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
| A0A438IAM2 | 4.3e-39 | 48.26 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
| A0A438E6Z5 | 4.3e-39 | 48.26 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
| A0A2Z6P7T0 | 5.6e-39 | 51.48 | Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium subt... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
