Moc10g26460 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g26460
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	histone deacetylase complex subunit SAP18-like
Location	chr10: 19402154 .. 19403947 (+)
RNA-Seq Expression	Moc10g26460
Synteny	Moc10g26460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAAACCAAAATTGGAAAAATCAAAACAGAAGCTCTGTAACGCCGTACACTCCCACCATGGACAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCAAGGTAGACCTTCCGCCCGGCCCTCCCTCCGCCGTCTCAGCCCAAAGCTCCGCCGCCGCCTCCTCGCCTCGTTTCGAAACCGTCGACCGCGAAAAGGTTTTTTTTTTTTTTTTTTTCTTTCTTAGGGCTTTGCCTTCCTCCTCTCGTGTTTTTTTCTCTCTTACTGAACCTTTGTCCGTTCATTCAACTGACTTTTCTCTTCGAATTTTGGCGTCCTCTGCGGGGAATTCAAGACCTGCCCTTTGTTGCTTCGGGTTTTTACTAAGGTACGTTTGAGTTTGTTGTGAGAAATCATTCTTAACTGATTTTTTTCCTTTGCTGTTTTGAAATTTGAGAAAATTTTTAATGTGCATCAATGGTGGAAGAAAATGTCGCGAGTTCTGACTTCCTGTTCTAAGTAACTGTTCGACATTGTTGTCCTCTGCTAGCTTTTATGATACTTCTGAGTTAATTAGCGATTGTGCACTTGTTCTACGTTGTCTTTACTCAATACGGTAGTGTTTAACCTTGATTCCGTTTCTATTGTTGTGTGAAGATCGTGTTGAAGATTTTTTTCACATTTTTCCTTTTCTTCTGATTGGTACACTTGGGAATTGTTCTTGAAAAAAAAAAAAAAACTTTATTTTGATATTAGAATTTGGGATTCATGTATTTTCATCTTACTGCGGACACTGACAGGATTATACAACATGAGCTTGAAGGAATAGATCTCAAATGATTTTTGTGAATTATCTTAAGTATTATTATTATGGATTGGAGCTATAGTTGTTTGGGTATATTTGGCTTGTTCATTTTTTTTTTCCTTTTCATATTCGTGAGTATCCAGGCCATTATGTTGACTCACTTCGGACAACCTCCTGACCCTACTCCATTTGGTTGCCAAGGAAATATCTACAATCCTAGAGGCCATTATGGGATTTGAAATCTTGTTAGGCTTGTTCATTAGGCTGTCTTTTTGTATCCTATTTTGTGTTATTTTATTTTTCTCAACGAGAGCTTGGTTTGCCAATTAAGAAAAAGAAAAATTGCCTCATTTACATTTGTTGCAGGTTGGAGGTCACCACTCTGATGAGGATTTTGCAATTAGAGGCAAGGAACCCAAAGATGAGGTTCAGATTTACACATGGAAAGATGCAACACTCCGGGAACTGACCGATCTAGTATGCTGAAAACCTACACTCATGACTCATCTATTTCTTCGTAGTGTGTTTCCAGTATTTTTCTGTTGATGTTTTGTATATGATAAATGCCCATCTAATTTTAGGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCAAAACTTTCTTTTGCTTTTGTTTATCCCGATAAGCGCGGTCGGTTCGTCTTGAAACAGGTGAGTGAATGATAGCAAAAATATCACCTGCAATGGACTTTAAATTTTACCTTCTCATTTAACTACAAGAATTGGTGATATATTAATAAGTTCAAGTTGTTATCATTTAATTAAGGTTGGAATGACACATTCTTATGGAAATGGGAGGAGATTAGATGATAGCAAGGCATTGGGTGAACTGGACTTCCAGGTAAAACTTGAATTCATGAATTGAGTTTTTTTGAAAGTTTGTGACTGTGAGGAAAATGAGATTTTTTATGCATTGTTTTAAATTTGAAAATTGTAGATTGGAGATTATTTGGACGTGGCAATTCTGTAG

mRNA sequence

ATGGTTAAACCAAAATTGGAAAAATCAAAACAGAAGCTCTGTAACGCCGTACACTCCCACCATGGACAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCAAGGTAGACCTTCCGCCCGGCCCTCCCTCCGCCGTCTCAGCCCAAAGCTCCGCCGCCGCCTCCTCGCCTCGTTTCGAAACCTGTTTAACCTTGATTCCGTTTCTATTGTTGTTGGAGGTCACCACTCTGATGAGGATTTTGCAATTAGAGGCAAGGAACCCAAAGATGAGGTTCAGATTTACACATGGAAAGATGCAACACTCCGGGAACTGACCGATCTAGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCAAAACTTTCTTTTGCTTTTGTTTATCCCGATAAGCGCGGTCGGTTCGTCTTGAAACAGGTTGGAATGACACATTCTTATGGAAATGGGAGGAGATTAGATGATAGCAAGGCATTGGGTGAACTGGACTTCCAGATTGGAGATTATTTGGACGTGGCAATTCTGTAG

Coding sequence (CDS)

ATGGTTAAACCAAAATTGGAAAAATCAAAACAGAAGCTCTGTAACGCCGTACACTCCCACCATGGACAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCAAGGTAGACCTTCCGCCCGGCCCTCCCTCCGCCGTCTCAGCCCAAAGCTCCGCCGCCGCCTCCTCGCCTCGTTTCGAAACCTGTTTAACCTTGATTCCGTTTCTATTGTTGTTGGAGGTCACCACTCTGATGAGGATTTTGCAATTAGAGGCAAGGAACCCAAAGATGAGGTTCAGATTTACACATGGAAAGATGCAACACTCCGGGAACTGACCGATCTAGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCAAAACTTTCTTTTGCTTTTGTTTATCCCGATAAGCGCGGTCGGTTCGTCTTGAAACAGGTTGGAATGACACATTCTTATGGAAATGGGAGGAGATTAGATGATAGCAAGGCATTGGGTGAACTGGACTTCCAGATTGGAGATTATTTGGACGTGGCAATTCTGTAG

Protein sequence

MVKPKLEKSKQKLCNAVHSHHGQRSRDEKMSGAATAPPQGRPSARPSLRRLSPKLRRRLLASFRNLFNLDSVSIVVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

Homology

[Close]

BLAST of Moc10g26460 vs. NCBI nr
Match: XP_022152730.1 (histone deacetylase complex subunit SAP18-like [Momordica charantia])

HSP 1 Score: 244.2 bits (622), Expect = 8.6e-61
Identity = 132/164 (80.49%), Postives = 135/164 (82.32%), Query Frame = 0


Query: 23  QRSRDEKMSGAATAPPQGRPSARPSLRRLSPKL-------RRRLLASFRNLFNLDSVSIV 82
           +RSRDEKMSGAATAPPQGRPSARP      PK        R   +   +    L  V   
Sbjct: 3   KRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRPRFEPVDREKTCPLLLRVFTK 62

Query: 83  VGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 142
           VGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD
Sbjct: 63  VGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 122

Query: 143 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 180
           KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 123 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of Moc10g26460 vs. NCBI nr
Match: XP_038905116.1 (histone deacetylase complex subunit SAP18-like [Benincasa hispida])

HSP 1 Score: 243.8 bits (621), Expect = 1.1e-60
Identity = 135/183 (73.77%), Postives = 146/183 (79.78%), Query Frame = 0


Query: 1   MVKPKLEKSKQKLCNAVHSHHGQRSRDEKMSGAATAPPQGRPSAR----PSLRRLSPKLR 60
           M KPK+E+S  ++CN   +   +RSRDEKMSGAATAP QGRPS R    P      P+ R
Sbjct: 1   MAKPKMEES--EVCNT--TTMDKRSRDEKMSGAATAPSQGRPSGRPLPPPKAPPPPPRPR 60

Query: 61  RRLLASFRNLFNLDSVSIVVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 120
              +   +    L  V   VGGHH+D+DFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV
Sbjct: 61  FEPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 120

Query: 121 APEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDV 180
           APEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDV
Sbjct: 121 APEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDV 179

[Close]

BLAST of Moc10g26460 vs. NCBI nr
Match: XP_004147963.1 (histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN55941.1 hypothetical protein Csa_009634 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 4.0e-58
Identity = 126/164 (76.83%), Postives = 133/164 (81.10%), Query Frame = 0


Query: 23  QRSRDEKMSGAATAPPQGRPSARP-------SLRRLSPKLRRRLLASFRNLFNLDSVSIV 82
           +RSRDEK SGAATAP QGRPS RP            +P+ R   +   +    L  V   
Sbjct: 3   KRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVFTK 62

Query: 83  VGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 142
           VGGHH+DEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD
Sbjct: 63  VGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 122

Query: 143 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 180
           KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 123 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of Moc10g26460 vs. NCBI nr
Match: KAG6596815.1 (Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 234.6 bits (597), Expect = 6.8e-58
Identity = 134/186 (72.04%), Postives = 141/186 (75.81%), Query Frame = 0


Query: 1   MVKPKLEKSKQKLCNAVHSHHGQRSRDEKMSGAATAPPQGRPSARP-------SLRRLSP 60
           M KPK  K+ QKL N       +RSRDEKMSGAATAPPQGRPSARP             P
Sbjct: 1   MAKPKNGKN-QKLSNT--PTMDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPP 60

Query: 61  KLRRRLLASFRNLFNLDSVSIVVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV 120
           + R   +   +    L  V   VG HH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Sbjct: 61  RARFEPVDREKTCPLLLRVFTKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV 120

Query: 121 KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDY 180
           KEVAPEARRRNAKLSFAFVYPDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDY
Sbjct: 121 KEVAPEARRRNAKLSFAFVYPDKRGRFVLKLVGTTHSYGNGRRLDGSKALGELDFQIGDY 180

[Close]

BLAST of Moc10g26460 vs. NCBI nr
Match: KAG7028342.1 (Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234.2 bits (596), Expect = 8.9e-58
Identity = 134/184 (72.83%), Postives = 139/184 (75.54%), Query Frame = 0


Query: 1   MVKPKLEKSKQKLCNAVHSHHGQRSRDEKMSGAATAPPQGRPSARP-----SLRRLSPKL 60
           M KPK  K+ QKL N       +RSRDEKMSGAATAPPQGRPSARP       +   P  
Sbjct: 1   MAKPKNGKN-QKLSNT--PTMDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPP 60

Query: 61  RRRLLASFRNLFNLDSVSIVVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKE 120
           R R     R           VG HH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKE
Sbjct: 61  RARFEPVDRE---------KVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKE 120

Query: 121 VAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLD 180
           VAPEARRRNAKLSFAFVYPDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLD
Sbjct: 121 VAPEARRRNAKLSFAFVYPDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLD 172

[Close]

BLAST of Moc10g26460 vs. ExPASy Swiss-Prot
Match: O64644 (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-36
Identity = 72/102 (70.59%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 77  GGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDK 136
           GGHH+ ED+A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ 
Sbjct: 50  GGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNN 109

Query: 137 RGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 179
           +G + +++VG T +Y N ++ DDSK L EL F+IGDYLDVAI
Sbjct: 110 KGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of Moc10g26460 vs. ExPASy Swiss-Prot
Match: Q3T022 (Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.8e-20
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 77  GGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD- 136
           G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA V+ D 
Sbjct: 38  GRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDL 97

Query: 137 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 179
           KR  + +K++G T S   G   DDS  L    FQIGDYLD+AI
Sbjct: 98  KRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDIAI 137

[Close]

BLAST of Moc10g26460 vs. ExPASy Swiss-Prot
Match: O00422 (Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.8e-20
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 77  GGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD- 136
           G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA V+ D 
Sbjct: 38  GRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDV 97

Query: 137 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 179
           KR  + +K++G T S   G   DDS  L    FQIGDYLD+AI
Sbjct: 98  KRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDIAI 137

[Close]

BLAST of Moc10g26460 vs. ExPASy Swiss-Prot
Match: Q5RDT5 (Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.8e-20
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 77  GGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD- 136
           G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA V+ D 
Sbjct: 38  GRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDV 97

Query: 137 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 179
           KR  + +K++G T S   G   DDS  L    FQIGDYLD+AI
Sbjct: 98  KRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDIAI 137

[Close]

BLAST of Moc10g26460 vs. ExPASy Swiss-Prot
Match: O55128 (Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.6e-20
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 77  GGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD- 136
           G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA V+ D 
Sbjct: 38  GRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDL 97

Query: 137 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 179
           KR  + +K++G T S   G   DDS  L    FQIGDYLD+AI
Sbjct: 98  KRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDIAI 137

[Close]

BLAST of Moc10g26460 vs. ExPASy TrEMBL
Match: A0A6J1DES5 (histone deacetylase complex subunit SAP18-like OS=Momordica charantia OX=3673 GN=LOC111020386 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.1e-61
Identity = 132/164 (80.49%), Postives = 135/164 (82.32%), Query Frame = 0


Query: 23  QRSRDEKMSGAATAPPQGRPSARPSLRRLSPKL-------RRRLLASFRNLFNLDSVSIV 82
           +RSRDEKMSGAATAPPQGRPSARP      PK        R   +   +    L  V   
Sbjct: 3   KRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRPRFEPVDREKTCPLLLRVFTK 62

Query: 83  VGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 142
           VGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD
Sbjct: 63  VGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 122

Query: 143 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 180
           KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 123 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of Moc10g26460 vs. ExPASy TrEMBL
Match: A0A0A0L751 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038150 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.9e-58
Identity = 126/164 (76.83%), Postives = 133/164 (81.10%), Query Frame = 0


Query: 23  QRSRDEKMSGAATAPPQGRPSARP-------SLRRLSPKLRRRLLASFRNLFNLDSVSIV 82
           +RSRDEK SGAATAP QGRPS RP            +P+ R   +   +    L  V   
Sbjct: 3   KRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVFTK 62

Query: 83  VGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 142
           VGGHH+DEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD
Sbjct: 63  VGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 122

Query: 143 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 180
           KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 123 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of Moc10g26460 vs. ExPASy TrEMBL
Match: A0A5D3D7E1 (Histone deacetylase complex subunit SAP18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001050 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.6e-58
Identity = 126/164 (76.83%), Postives = 132/164 (80.49%), Query Frame = 0


Query: 23  QRSRDEKMSGAATAPPQGRPSARP-------SLRRLSPKLRRRLLASFRNLFNLDSVSIV 82
           +RSRDEK SGAA AP QGRPS RP            +P+ R   +   +    L  V   
Sbjct: 3   KRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVFTK 62

Query: 83  VGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 142
           VGGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD
Sbjct: 63  VGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 122

Query: 143 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 180
           KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 123 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of Moc10g26460 vs. ExPASy TrEMBL
Match: A0A1S3BLT9 (histone deacetylase complex subunit SAP18-like OS=Cucumis melo OX=3656 GN=LOC103490959 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.6e-58
Identity = 126/164 (76.83%), Postives = 132/164 (80.49%), Query Frame = 0


Query: 23  QRSRDEKMSGAATAPPQGRPSARP-------SLRRLSPKLRRRLLASFRNLFNLDSVSIV 82
           +RSRDEK SGAA AP QGRPS RP            +P+ R   +   +    L  V   
Sbjct: 3   KRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVFTK 62

Query: 83  VGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 142
           VGGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD
Sbjct: 63  VGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 122

Query: 143 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 180
           KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 123 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of Moc10g26460 vs. ExPASy TrEMBL
Match: A0A6J1KTJ0 (histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LOC111498523 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.6e-57
Identity = 125/164 (76.22%), Postives = 131/164 (79.88%), Query Frame = 0


Query: 23  QRSRDEKMSGAATAPPQGRPSARP-------SLRRLSPKLRRRLLASFRNLFNLDSVSIV 82
           +RSRDEKMSGAATAPPQGRPSARP             P+ R   +   +    L  V   
Sbjct: 3   KRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTK 62

Query: 83  VGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 142
           VG HH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD
Sbjct: 63  VGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD 122

Query: 143 KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 180
           KRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 123 KRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 166

[Close]

BLAST of Moc10g26460 vs. TAIR 10
Match: AT2G45640.1 (SIN3 associated polypeptide P18 )

HSP 1 Score: 154.5 bits (389), Expect = 8.3e-38
Identity = 72/102 (70.59%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 77  GGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDK 136
           GGHH+ ED+A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ 
Sbjct: 50  GGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNN 109

Query: 137 RGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 179
           +G + +++VG T +Y N ++ DDSK L EL F+IGDYLDVAI
Sbjct: 110 KGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of Moc10g26460 vs. TAIR 10
Match: AT2G45640.2 (SIN3 associated polypeptide P18 )

HSP 1 Score: 148.3 bits (373), Expect = 6.0e-36
Identity = 72/102 (70.59%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 77  GGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDK 136
           GGHH+ ED+A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ 
Sbjct: 50  GGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNN 109

Query: 137 RGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 179
           +G +    VG T +Y N ++ DDSK L EL F+IGDYLDVAI
Sbjct: 110 KGGY---NVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 148

The following BLAST results are available for this feature:

BLAST of Moc10g26460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152730.1	8.6e-61	80.49	histone deacetylase complex subunit SAP18-like [Momordica charantia]	[more]
XP_038905116.1	1.1e-60	73.77	histone deacetylase complex subunit SAP18-like [Benincasa hispida]	[more]
XP_004147963.1	4.0e-58	76.83	histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN55941.1 hypothet...	[more]
KAG6596815.1	6.8e-58	72.04	Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp...	[more]
KAG7028342.1	8.9e-58	72.83	Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Moc10g26460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64644	1.2e-36	70.59	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2...	[more]
Q3T022	5.8e-20	52.43	Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV...	[more]
O00422	5.8e-20	52.43	Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 ...	[more]
Q5RDT5	5.8e-20	52.43	Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 ...	[more]
O55128	7.6e-20	52.43	Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1...	[more]

BLAST of Moc10g26460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DES5	4.1e-61	80.49	histone deacetylase complex subunit SAP18-like OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0L751	1.9e-58	76.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038150 PE=3 SV=1	[more]
A0A5D3D7E1	5.6e-58	76.83	Histone deacetylase complex subunit SAP18-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BLT9	5.6e-58	76.83	histone deacetylase complex subunit SAP18-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1KTJ0	1.6e-57	76.22	histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Moc10g26460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45640.1	8.3e-38	70.59	SIN3 associated polypeptide P18	[more]
AT2G45640.2	6.0e-36	70.59	SIN3 associated polypeptide P18	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 77..178 e-value: 1.3E-27 score: 96.7
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 23..179
IPR042534	Sin3 associated polypeptide p18 superfamily	GENE3D	3.10.20.550	ASAP complex, SAP18 subunit	coord: 71..179 e-value: 3.7E-35 score: 122.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR13082:SF4	DEACETYLASE COMPLEX SUBUNIT SAP18, PUTATIVE-RELATED	coord: 23..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g26460.1	Moc10g26460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003714	transcription corepressor activity