Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATATGAACCCTCAAAGAGCTCAGGAACCCTTCATAGCCAACATATTAGCCACAGATCTGCCGAAGGGGTTCAAGGGCCCTCGGTTGGACAAGTACGACGGATCAGAAGACCCATGGACCACACCACATCGTACCACGATGCGATGTGGCAGGCAGGGTTCAATGACGTCGAGCAGTGCAAAGGTTTCTACAGAACCCTCATCAGACCCGCTCGGCAATGGTTCCAGTATATGCCTCCGCACTCGGTGTGGAGCTACGAGGACCTAGCGAGCAAGTTCGTAGACCAGTTCCATTACTCCAGCACCAACGGGCGAATGGAAGCCCATATATCCTTGATCAAGCAGAAACCATGTGAGAACCTAAAAGCGTATGTTGCACGTTTCTCAAATGAGAAGCTCCGAGTACCAAACTACAACAAAAGTGTGGCCCTATGGGCACTCTCCCAAGGCATCAAAGAAAGAAAACTTGTACGATCACTAGGCGAGTACACTACTAAGTCTATGGCCGAACTCACGGCTTGGATTAACAGGCACATAGCTGGAGAGGAGATGCTCGCGGCCCAGTCCCTAGGCAAGAAGCCAAGCGACGGGACTTGGCGTGACAAATGGAAATCAGCGGAGAGATCAGCTGCAAAGAGAGAGCCCGACGGGGCTCGATCAGACTTCGCGATATGGGAAATACACTCTCGCTTCCTGGTACACCAGATAATTGCTCGAATCGATGGGACCCCCGTCGTCAACCTGTTGCAATGGTCATAA
mRNA sequence
ATGCAATATGAACCCTCAAAGAGCTCAGGAACCCTTCATAGCCAACATATTAGCCACAGATCTGCCGAAGGGGTTCAAGGGCCCTCGGTTGGACAAGTACGACGGATCAGAAGACCCATGGACCACACCACATCGTACCACGATGCGATGTGGCAGGCAGGGTTCAATGACGTCGAGCAGTGCAAAGGTTTCTACAGAACCCTCATCAGACCCGCTCGGCAATGGTTCCAGTATATGCCTCCGCACTCGGTGTGGAGCTACGAGGACCTAGCGAGCAAGTTCGTAGACCAGTTCCATTACTCCAGCACCAACGGGCGAATGGAAGCCCATATATCCTTGATCAAGCAGAAACCATGTGAGAACCTAAAAGCGTATGTTGCACGTTTCTCAAATGAGAAGCTCCGAGTACCAAACTACAACAAAAGTGTGGCCCTATGGGCACTCTCCCAAGGCATCAAAGAAAGAAAACTTGTACGATCACTAGGCGAGTACACTACTAAGTCTATGGCCGAACTCACGGCTTGGATTAACAGGCACATAGCTGGAGAGGAGATGCTCGCGGCCCAGTCCCTAGGCAAGAAGCCAAGCGACGGGACTTGGCGTGACAAATGGAAATCAGCGGAGAGATCAGCTGCAAAGAGAGAGCCCGACGGGGCTCGATCAGACTTCGCGATATGGGAAATACACTCTCGCTTCCTGGTACACCAGATAATTGCTCGAATCGATGGGACCCCCGTCGTCAACCTGTTGCAATGGTCATAA
Coding sequence (CDS)
ATGCAATATGAACCCTCAAAGAGCTCAGGAACCCTTCATAGCCAACATATTAGCCACAGATCTGCCGAAGGGGTTCAAGGGCCCTCGGTTGGACAAGTACGACGGATCAGAAGACCCATGGACCACACCACATCGTACCACGATGCGATGTGGCAGGCAGGGTTCAATGACGTCGAGCAGTGCAAAGGTTTCTACAGAACCCTCATCAGACCCGCTCGGCAATGGTTCCAGTATATGCCTCCGCACTCGGTGTGGAGCTACGAGGACCTAGCGAGCAAGTTCGTAGACCAGTTCCATTACTCCAGCACCAACGGGCGAATGGAAGCCCATATATCCTTGATCAAGCAGAAACCATGTGAGAACCTAAAAGCGTATGTTGCACGTTTCTCAAATGAGAAGCTCCGAGTACCAAACTACAACAAAAGTGTGGCCCTATGGGCACTCTCCCAAGGCATCAAAGAAAGAAAACTTGTACGATCACTAGGCGAGTACACTACTAAGTCTATGGCCGAACTCACGGCTTGGATTAACAGGCACATAGCTGGAGAGGAGATGCTCGCGGCCCAGTCCCTAGGCAAGAAGCCAAGCGACGGGACTTGGCGTGACAAATGGAAATCAGCGGAGAGATCAGCTGCAAAGAGAGAGCCCGACGGGGCTCGATCAGACTTCGCGATATGGGAAATACACTCTCGCTTCCTGGTACACCAGATAATTGCTCGAATCGATGGGACCCCCGTCGTCAACCTGTTGCAATGGTCATAA
Protein sequence
MQYEPSKSSGTLHSQHISHRSAEGVQGPSVGQVRRIRRPMDHTTSYHDAMWQAGFNDVEQCKGFYRTLIRPARQWFQYMPPHSVWSYEDLASKFVDQFHYSSTNGRMEAHISLIKQKPCENLKAYVARFSNEKLRVPNYNKSVALWALSQGIKERKLVRSLGEYTTKSMAELTAWINRHIAGEEMLAAQSLGKKPSDGTWRDKWKSAERSAAKREPDGARSDFAIWEIHSRFLVHQIIARIDGTPVVNLLQWS
Homology
BLAST of Moc10g16370 vs. NCBI nr
Match:
MQM14562.1 (hypothetical protein [Colocasia esculenta])
HSP 1 Score: 100.9 bits (250), Expect = 1.7e-17
Identity = 67/197 (34.01%), Postives = 95/197 (48.22%), Query Frame = 0
Query: 28 PSVGQVRRIRRPMDHTTSYHDAMWQAGFNDVEQCKGFYRTLIRPARQWFQYMPPHSVWSY 87
P++ P DH + M G +D +C+ F TL AR WF+ +P S+ S+
Sbjct: 436 PTIAPYDGTTDPADHIHGFESHMVFHGASDAAKCRAFPATLKETARAWFETLPAGSITSF 495
Query: 88 EDLASKFVDQFHYSSTNGRMEAHISLIKQKPCENLKAYVARFSNEKLRVPNYNKSVALWA 147
L F D F + RM A + ++QK E L +V RF E LR+ + +A A
Sbjct: 496 RQLKKSFRDNFLGGRSQPRMAASLLAVRQKKSEALWDFVKRFRTEALRISRLDVPLATSA 555
Query: 148 LSQGIKERKLVRSLGEYTTKSMAELTAWINRHIAGEEMLAA-------QSLGKKPSD-GT 207
L QG ++ L R+LG ++AEL + RH A EE LAA QS K+PSD G+
Sbjct: 556 LIQGTRDGFLQRTLGVQQPATLAELLSIAQRHAACEESLAASRAEQGEQSDKKRPSDNGS 615
Query: 208 WRDKWKSAERSAAKREP 217
RD+ K + R P
Sbjct: 616 DRDRKKGRRNGDSPRRP 632
BLAST of Moc10g16370 vs. NCBI nr
Match:
XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])
HSP 1 Score: 97.8 bits (242), Expect = 1.4e-16
Identity = 63/204 (30.88%), Postives = 100/204 (49.02%), Query Frame = 0
Query: 28 PSVGQVRRIRRPMDHTTSYHDAMWQAGFNDVEQCKGFYRTLIRPARQWFQYMPPHSVWSY 87
P+V Q P+DH +Y + M G ++ +C+ F TL AR WF+ + S+ S+
Sbjct: 196 PTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSF 255
Query: 88 EDLASKFVDQFHYSSTNGRMEAHISLIKQKPCENLKAYVARFSNEKLRVPNYNKSVALWA 147
+ LA FV QF R A++ IKQ+ E+L+ YVARF+ EKL+V +V+L A
Sbjct: 256 KSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLA 315
Query: 148 LSQGIKERKLVRSLGEYTTKSMAELTAWINRHIAGEEMLAAQSLGKKPSDGTWRDKWKSA 207
G+++ L S G+ T + +E + R+++ E K+ DG
Sbjct: 316 FMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFF----YSKREPDG--------- 375
Query: 208 ERSAAKREPDGARSDFAIWEIHSR 232
+R+ KRE G + + WE R
Sbjct: 376 KRTDPKRERSGDKPQGSRWEKRDR 386
BLAST of Moc10g16370 vs. NCBI nr
Match:
MQL88744.1 (hypothetical protein [Colocasia esculenta])
HSP 1 Score: 97.4 bits (241), Expect = 1.8e-16
Identity = 65/186 (34.95%), Postives = 92/186 (49.46%), Query Frame = 0
Query: 39 PMDHTTSYHDAMWQAGFNDVEQCKGFYRTLIRPARQWFQYMPPHSVWSYEDLASKFVDQF 98
P DH + M G +DV +C+ F TL AR WF+ +P S+ S+ L F D F
Sbjct: 322 PADHIHGFESHMVFHGASDVAKCRAFPATLKETARAWFETLPAGSITSFRQLKKSFRDNF 381
Query: 99 HYSSTNGRMEAHISLIKQKPCENLKAYVARFSNEKLRVPNYNKSVALWALSQGIKERKLV 158
+ R A + ++QK + L +V RF E LR+ + +A AL QG ++ L
Sbjct: 382 LGGRSQPRTAASLLAVRQKKGKALWDFVKRFRTEALRISRLDVPLATSALIQGTRDGFLQ 441
Query: 159 RSLGEYTTKSMAELTAWINRHIAGEEMLAA-------QSLGKKPSD-GTWRDKWKSAERS 217
R+LG ++AEL + RH A EE LAA QS K+PSD G+ RD+ K
Sbjct: 442 RTLGVQQPATLAELLSIAQRHAACEESLAASRAEQGEQSDKKRPSDNGSDRDRKKGRRNG 501
BLAST of Moc10g16370 vs. NCBI nr
Match:
MQM01468.1 (hypothetical protein [Colocasia esculenta])
HSP 1 Score: 97.1 bits (240), Expect = 2.4e-16
Identity = 66/197 (33.50%), Postives = 94/197 (47.72%), Query Frame = 0
Query: 28 PSVGQVRRIRRPMDHTTSYHDAMWQAGFNDVEQCKGFYRTLIRPARQWFQYMPPHSVWSY 87
P++ P DH + M G +D +C+ F TL AR WF+ +P S+ S+
Sbjct: 40 PTIAPYDGTTDPADHIHGFESHMVFHGASDAAKCRAFPATLKETARAWFETLPAGSITSF 99
Query: 88 EDLASKFVDQFHYSSTNGRMEAHISLIKQKPCENLKAYVARFSNEKLRVPNYNKSVALWA 147
L F D F + R A + ++QK E L +V RF E LR+ + +A A
Sbjct: 100 RQLKKSFRDNFLGGRSQPRTAASLLAVRQKKGEALWDFVKRFRTEALRISRLDVPLATSA 159
Query: 148 LSQGIKERKLVRSLGEYTTKSMAELTAWINRHIAGEEMLAA-------QSLGKKPSD-GT 207
L QG ++ L R+LG ++AEL + RH A EE LAA QS K+PSD G+
Sbjct: 160 LIQGTRDGFLQRTLGVQQPTTLAELLSIAQRHAACEESLAASRAEQGEQSDKKRPSDNGS 219
Query: 208 WRDKWKSAERSAAKREP 217
RD+ K + R P
Sbjct: 220 NRDRKKGWRNGDSPRRP 236
BLAST of Moc10g16370 vs. NCBI nr
Match:
GFY97585.1 (hypothetical protein Acr_12g0001260 [Actinidia rufa])
HSP 1 Score: 95.1 bits (235), Expect = 9.1e-16
Identity = 55/185 (29.73%), Postives = 93/185 (50.27%), Query Frame = 0
Query: 39 PMDHTTSYHDAMWQAGFNDVEQCKGFYRTLIRPARQWFQYMPPHSVWSYEDLASKFVDQF 98
PMDH SY M+ GF+D CK F TL PAR WF+ + P +V S+ +L+ FV F
Sbjct: 346 PMDHLDSYKSLMFLQGFSDEVMCKAFSATLKGPARSWFRKLSPGTVDSFGELSRLFVANF 405
Query: 99 HYSSTNGRMEAHISLIKQKPCENLKAYVARFSNEKLRVPNYNKSVALWALSQGIKERKLV 158
+ +H+ + QK E+LK +V R + L V + + V + A+ +G++ L
Sbjct: 406 MSCRNRQKNASHLFTVHQKETESLKDFVKRCNQTVLEVEDPSDKVVIMAMMEGLRPGPLF 465
Query: 159 RSLGEYTTKSMAELTAWINRHIAGEEMLAAQSLGKKPSDGTWRDKWKSAERSAAKREPDG 218
SL + ++++ L + +++IA EE+ A+ + D ++EPD
Sbjct: 466 DSLSKNVPETLSALQSKADKYIAAEELAEAKRRRRGKDD-------------HKRKEPDT 517
Query: 219 ARSDF 224
R+D+
Sbjct: 526 RRTDY 517
BLAST of Moc10g16370 vs. ExPASy TrEMBL
Match:
A0A2N9EGR1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6039 PE=4 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 3.0e-17
Identity = 63/191 (32.98%), Postives = 95/191 (49.74%), Query Frame = 0
Query: 28 PSVGQVRRIRRPMDHTTSYHDAMWQAGFNDVEQCKGFYRTLIRPARQWFQYMPPHSVWSY 87
PS+ + P+DH S+ M G D C+ F TL PAR WF+ + P SV S+
Sbjct: 168 PSLETFDGSKDPLDHLESFKTVMCLQGVPDEIMCRAFPTTLKGPARVWFKKITPDSVGSF 227
Query: 88 EDLASKFVDQFHYSSTNGRMEAHISLIKQKPCENLKAYVARFSNEKLRVPNYNKSVALWA 147
L+ F + F + GR H+ IKQK E L++Y+ RF+ E L V + V L A
Sbjct: 228 AQLSRLFFNHFIGAQRYGRPTTHLLNIKQKEGETLRSYLTRFNKETLLVDGADDKVVLTA 287
Query: 148 LSQGIKERKLVRSLGEYTTKSMAELTAWINRHIAGEEMLAA--QSLGKKPSDGTWRDKWK 207
G++ + S+ + +M E+ RH+ GEE L A Q++GKK + ++RD K
Sbjct: 288 FISGLQAGDFLFSVYKDPPSTMTEMMYEAQRHMNGEEALLARDQTIGKKRKE-SYRDSLK 347
Query: 208 SAERSAAKREP 217
+R + P
Sbjct: 348 RGQREGRPQGP 357
BLAST of Moc10g16370 vs. ExPASy TrEMBL
Match:
A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 6.8e-17
Identity = 63/204 (30.88%), Postives = 100/204 (49.02%), Query Frame = 0
Query: 28 PSVGQVRRIRRPMDHTTSYHDAMWQAGFNDVEQCKGFYRTLIRPARQWFQYMPPHSVWSY 87
P+V Q P+DH +Y + M G ++ +C+ F TL AR WF+ + S+ S+
Sbjct: 196 PTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSF 255
Query: 88 EDLASKFVDQFHYSSTNGRMEAHISLIKQKPCENLKAYVARFSNEKLRVPNYNKSVALWA 147
+ LA FV QF R A++ IKQ+ E+L+ YVARF+ EKL+V +V+L A
Sbjct: 256 KSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLA 315
Query: 148 LSQGIKERKLVRSLGEYTTKSMAELTAWINRHIAGEEMLAAQSLGKKPSDGTWRDKWKSA 207
G+++ L S G+ T + +E + R+++ E K+ DG
Sbjct: 316 FMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFF----YSKREPDG--------- 375
Query: 208 ERSAAKREPDGARSDFAIWEIHSR 232
+R+ KRE G + + WE R
Sbjct: 376 KRTDPKRERSGDKPQGSRWEKRDR 386
BLAST of Moc10g16370 vs. ExPASy TrEMBL
Match:
A0A2N9J8H7 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61444 PE=4 SV=1)
HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 66/195 (33.85%), Postives = 94/195 (48.21%), Query Frame = 0
Query: 28 PSVGQVRRIRRPMDHTTSYHDAMWQAGFNDVEQCKGFYRTLIRPARQWFQYMPPHSVWSY 87
PS+ R P+DH S+ M G D C+ F TL PAR WF+ + P SV S+
Sbjct: 297 PSLDTFDGSRDPLDHLESFKTVMCLQGVPDEIMCRAFPTTLKGPARVWFKKITPDSVGSF 356
Query: 88 EDLASKFVDQFHYSSTNGRMEAHISLIKQKPCENLKAYVARFSNEKLRVPNYNKSVALWA 147
L+ F + F + GR H+ IKQK E L++Y+ RF+ E L V + V L A
Sbjct: 357 AQLSRLFFNHFIGAQRYGRPTTHLLNIKQKEGETLRSYLTRFNKETLLVDGADDKVVLTA 416
Query: 148 LSQGIKERKLVRSLGEYTTKSMAELTAWINRHIAGEEMLAA--QSLGKKPSDGTWRDKWK 207
G++ + S+ + +M E+ RH+ GEE L A Q++GKK KW+
Sbjct: 417 FISGLQAGDFLFSVYKDPPSTMTEMMYEAQRHMNGEEALLARDQTVGKK-------RKWE 476
Query: 208 SAERSAAKREPDGAR 221
+R A EP R
Sbjct: 477 PPDRPA---EPHDTR 481
BLAST of Moc10g16370 vs. ExPASy TrEMBL
Match:
A0A2N9IZX9 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57615 PE=4 SV=1)
HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 63/190 (33.16%), Postives = 92/190 (48.42%), Query Frame = 0
Query: 28 PSVGQVRRIRRPMDHTTSYHDAMWQAGFNDVEQCKGFYRTLIRPARQWFQYMPPHSVWSY 87
PS+ + P+DH S+ M G D C+ F TL PAR WF+ + P SV S+
Sbjct: 168 PSLETFDGSKDPLDHLESFKTVMCLQGVPDEIMCRAFPTTLKGPARVWFKKITPGSVGSF 227
Query: 88 EDLASKFVDQFHYSSTNGRMEAHISLIKQKPCENLKAYVARFSNEKLRVPNYNKSVALWA 147
L+ F + F GR H+ IKQK E L++Y+ RF+ E L V + V L A
Sbjct: 228 PQLSRLFFNHFIGGQRYGRPTTHLLNIKQKEGETLRSYLTRFNKETLLVDGADDKVVLMA 287
Query: 148 LSQGIKERKLVRSLGEYTTKSMAELTAWINRHIAGEEMLAA--QSLGKKPSDGTWRDKWK 207
G++ + S+ + +M E+ RH+ GEE L A Q++GKK KW+
Sbjct: 288 FISGLQAGDFLFSVYKDPPSTMTEMMYEAQRHMNGEEALLARDQTIGKK-------RKWE 347
Query: 208 SAERSAAKRE 216
++R A E
Sbjct: 348 YSDRPAESHE 350
BLAST of Moc10g16370 vs. ExPASy TrEMBL
Match:
A0A2N9F3D0 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13369 PE=4 SV=1)
HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 66/195 (33.85%), Postives = 94/195 (48.21%), Query Frame = 0
Query: 28 PSVGQVRRIRRPMDHTTSYHDAMWQAGFNDVEQCKGFYRTLIRPARQWFQYMPPHSVWSY 87
PS+ R P+DH S+ M G D C+ F TL PAR WF+ + P SV S+
Sbjct: 320 PSLDTFDGSRDPLDHLESFKTVMCLQGVPDEIMCRAFPTTLKGPARVWFKKITPDSVGSF 379
Query: 88 EDLASKFVDQFHYSSTNGRMEAHISLIKQKPCENLKAYVARFSNEKLRVPNYNKSVALWA 147
L+ F + F + GR H+ IKQK E L++Y+ RF+ E L V + V L A
Sbjct: 380 AQLSRLFFNHFIGAQRYGRPTTHLLNIKQKEGETLRSYLTRFNKETLLVDGADDKVVLTA 439
Query: 148 LSQGIKERKLVRSLGEYTTKSMAELTAWINRHIAGEEMLAA--QSLGKKPSDGTWRDKWK 207
G++ + S+ + +M E+ RH+ GEE L A Q++GKK KW+
Sbjct: 440 FISGLQAGDFLFSVYKDPPSTMTEMMYEAQRHMNGEEALLARDQTVGKK-------RKWE 499
Query: 208 SAERSAAKREPDGAR 221
+R A EP R
Sbjct: 500 PPDRPA---EPHDTR 504
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
MQM14562.1 | 1.7e-17 | 34.01 | hypothetical protein [Colocasia esculenta] | [more] |
XP_022158830.1 | 1.4e-16 | 30.88 | uncharacterized protein LOC111025293 [Momordica charantia] | [more] |
MQL88744.1 | 1.8e-16 | 34.95 | hypothetical protein [Colocasia esculenta] | [more] |
MQM01468.1 | 2.4e-16 | 33.50 | hypothetical protein [Colocasia esculenta] | [more] |
GFY97585.1 | 9.1e-16 | 29.73 | hypothetical protein Acr_12g0001260 [Actinidia rufa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2N9EGR1 | 3.0e-17 | 32.98 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6039 PE=4 SV=1 | [more] |
A0A6J1DWY0 | 6.8e-17 | 30.88 | uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A2N9J8H7 | 1.5e-16 | 33.85 | Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61444 PE=4 SV=1 | [more] |
A0A2N9IZX9 | 1.5e-16 | 33.16 | Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... | [more] |
A0A2N9F3D0 | 1.5e-16 | 33.85 | Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13369 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |