Moc09g38140 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g38140
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	inflorescence deficient in abscission (IDA)-like 2
Location	chr9: 29339043 .. 29339291 (+)
RNA-Seq Expression	Moc09g38140
Synteny	Moc09g38140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCTCGATTCACCCCAATCGCCATTTTTTCCATTTTTCTCCTCCTCCTTCTTTCTGGATTTTGCTCTGCGACTCGCCCGGGGAAGACGATCGACATGTCGGATAATAATTCTTTTGATTACAAGACCGGCTTCCGATATGTCGGACAGACCTTCAGCTTCCTCCCCAAAGGCGTCCCCGTTCCTCCTTCAGGCCCCTCCGACAGGCACAATTCCAAAATCGACTCCATTCCTCACAATTAA

mRNA sequence

ATGGCTTCTTCTCGATTCACCCCAATCGCCATTTTTTCCATTTTTCTCCTCCTCCTTCTTTCTGGATTTTGCTCTGCGACTCGCCCGGGGAAGACGATCGACATGTCGGATAATAATTCTTTTGATTACAAGACCGGCTTCCGATATGTCGGACAGACCTTCAGCTTCCTCCCCAAAGGCGTCCCCGTTCCTCCTTCAGGCCCCTCCGACAGGCACAATTCCAAAATCGACTCCATTCCTCACAATTAA

Coding sequence (CDS)

ATGGCTTCTTCTCGATTCACCCCAATCGCCATTTTTTCCATTTTTCTCCTCCTCCTTCTTTCTGGATTTTGCTCTGCGACTCGCCCGGGGAAGACGATCGACATGTCGGATAATAATTCTTTTGATTACAAGACCGGCTTCCGATATGTCGGACAGACCTTCAGCTTCCTCCCCAAAGGCGTCCCCGTTCCTCCTTCAGGCCCCTCCGACAGGCACAATTCCAAAATCGACTCCATTCCTCACAATTAA

Protein sequence

MASSRFTPIAIFSIFLLLLLSGFCSATRPGKTIDMSDNNSFDYKTGFRYVGQTFSFLPKGVPVPPSGPSDRHNSKIDSIPHN

Homology

[Close]

BLAST of Moc09g38140 vs. NCBI nr
Match: KAG6601330.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.7 bits (278), Expect = 3.0e-21
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 2  ASSRFTPIAIFSIFLLLLLSGFCSATRPGKTID---MSDNNSFDYKTGFRYVGQTFSFLP 61
          +SS  + ++   + LLLL+SGFCSATRPGKT+      D ++F+YKTGFRYVGQTFS+LP
Sbjct: 10 SSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLP 69

Query: 62 KGVPVPPSGPSDRHNSKIDSIP 81
          +GVP+PPSGPSDRHNS +DS+P
Sbjct: 70 RGVPIPPSGPSDRHNSLVDSLP 91

[Close]

BLAST of Moc09g38140 vs. NCBI nr
Match: KAG7032113.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 8.8e-21
Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 2  ASSRFTPIAIFSIFLLLLLSGFCSATRPGKTID---MSDNNSFDYKTGFRYVGQTFSFLP 61
          +SS  + ++   + LLLL+SGFCSATRPGKT+      D  +F+YKTGFRYVGQTFS+LP
Sbjct: 5  SSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLP 64

Query: 62 KGVPVPPSGPSDRHNSKIDSIP 81
          +GVP+PPSGPSDRHNS +DS+P
Sbjct: 65 RGVPIPPSGPSDRHNSLVDSLP 86

[Close]

BLAST of Moc09g38140 vs. NCBI nr
Match: KGN52035.1 (hypothetical protein Csa_008746 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 2  ASSRFTPIAIF-SIFLLLLLSGFCSATRPGKTIDMSDNN---SFDYKTGFRYVGQTFSFL 61
          +SS  T I IF  + LLLLLSG  SATRPGKT++ ++ N   S  YKT FRY GQTFSFL
Sbjct: 3  SSSSQTSIPIFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFL 62

Query: 62 PKGVPVPPSGPSDRHNSKIDSIPHN 83
          PKGVP+PPSGPSDRHNS +DS+P N
Sbjct: 63 PKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of Moc09g38140 vs. NCBI nr
Match: KAA0034518.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 3.1e-18
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 9  IAIFSIFLLLLLSGFCSATRPGKTIDMSDNNSFDYK-TGFRYVGQTFSFLPKGVPVPPSG 68
          I IF I LLLLLSGF SATRPG T++  D ++ +YK T FRY GQTF FLPKGVP+PPSG
Sbjct: 25 IPIF-ILLLLLLSGFSSATRPGGTMEFPDMSNSNYKTTAFRYAGQTFGFLPKGVPIPPSG 84

Query: 69 PSDRHNSKIDSIPHN 83
          PSDRHNS +DS+P N
Sbjct: 85 PSDRHNSVVDSLPPN 98

[Close]

BLAST of Moc09g38140 vs. NCBI nr
Match: TYK09072.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 3.1e-18
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 9   IAIFSIFLLLLLSGFCSATRPGKTIDMSDNNSFDYK-TGFRYVGQTFSFLPKGVPVPPSG 68
           I IF I LLLLLSGF SATRPG T++  D ++ +YK T FRY GQTF FLPKGVP+PPSG
Sbjct: 29  IPIF-ILLLLLLSGFSSATRPGGTMEFPDMSNSNYKTTAFRYAGQTFGFLPKGVPIPPSG 88

Query: 69  PSDRHNSKIDSIPHN 83
           PSDRHNS +DS+P N
Sbjct: 89  PSDRHNSVVDSLPPN 102

[Close]

BLAST of Moc09g38140 vs. ExPASy Swiss-Prot
Match: Q8LAD7 (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-07
Identity = 31/82 (37.80%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 1  MASSRFTPIAIFSIFLLLLLSGFCSATRPGKTIDMSDN-NSFDYKTGFRYVGQTFSFLPK 60
          MA  R   + +  +  L   S   +A R G T++M  N     +K         F +LPK
Sbjct: 1  MAPCRTMMVLLCFVLFLAASSSCVAAARIGATMEMKKNIKRLTFKN-----SHIFGYLPK 60

Query: 61 GVPVPPSGPSDRHNSKIDSIPH 82
          GVP+PPS PS RHNS ++S+PH
Sbjct: 61 GVPIPPSAPSKRHNSFVNSLPH 77

[Close]

BLAST of Moc09g38140 vs. ExPASy TrEMBL
Match: A0A0A0KR07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.1e-20
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 2  ASSRFTPIAIF-SIFLLLLLSGFCSATRPGKTIDMSDNN---SFDYKTGFRYVGQTFSFL 61
          +SS  T I IF  + LLLLLSG  SATRPGKT++ ++ N   S  YKT FRY GQTFSFL
Sbjct: 3  SSSSQTSIPIFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFL 62

Query: 62 PKGVPVPPSGPSDRHNSKIDSIPHN 83
          PKGVP+PPSGPSDRHNS +DS+P N
Sbjct: 63 PKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of Moc09g38140 vs. ExPASy TrEMBL
Match: A0A5D3CCP4 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00620 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 9   IAIFSIFLLLLLSGFCSATRPGKTIDMSDNNSFDYK-TGFRYVGQTFSFLPKGVPVPPSG 68
           I IF I LLLLLSGF SATRPG T++  D ++ +YK T FRY GQTF FLPKGVP+PPSG
Sbjct: 29  IPIF-ILLLLLLSGFSSATRPGGTMEFPDMSNSNYKTTAFRYAGQTFGFLPKGVPIPPSG 88

Query: 69  PSDRHNSKIDSIPHN 83
           PSDRHNS +DS+P N
Sbjct: 89  PSDRHNSVVDSLPPN 102

[Close]

BLAST of Moc09g38140 vs. ExPASy TrEMBL
Match: A0A5A7SV51 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005330 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 9  IAIFSIFLLLLLSGFCSATRPGKTIDMSDNNSFDYK-TGFRYVGQTFSFLPKGVPVPPSG 68
          I IF I LLLLLSGF SATRPG T++  D ++ +YK T FRY GQTF FLPKGVP+PPSG
Sbjct: 25 IPIF-ILLLLLLSGFSSATRPGGTMEFPDMSNSNYKTTAFRYAGQTFGFLPKGVPIPPSG 84

Query: 69 PSDRHNSKIDSIPHN 83
          PSDRHNS +DS+P N
Sbjct: 85 PSDRHNSVVDSLPPN 98

[Close]

BLAST of Moc09g38140 vs. ExPASy TrEMBL
Match: A0A5D2EBI1 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G197000v1 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.1e-14
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 11 IFSIFLLLLLSGFCSATRPGKTIDMSDNNSF-----DYKTGFRYVGQTFSFLPKGVPVPP 70
          I+ +FL+ LL+G   ATRPGKTI + D  S       Y+TGFRY GQ F+F PKG+P+PP
Sbjct: 27 IYVVFLITLLAGSSFATRPGKTIIVDDTVSMTVFPRKYETGFRYQGQMFNFFPKGIPIPP 86

Query: 71 SGPSDRHNSKIDS 79
          SGPS RHNS +DS
Sbjct: 87 SGPSKRHNSVVDS 99

[Close]

BLAST of Moc09g38140 vs. ExPASy TrEMBL
Match: A0A2P5SAI3 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G180800v1 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.1e-14
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 11 IFSIFLLLLLSGFCSATRPGKTIDMSDNNSF-----DYKTGFRYVGQTFSFLPKGVPVPP 70
          I+ +FL+ LL+G   ATRPGKTI + D  S       Y+TGFRY GQ F+F PKG+P+PP
Sbjct: 27 IYVVFLITLLAGSSFATRPGKTIIVDDTVSMTVFPRKYETGFRYQGQMFNFFPKGIPIPP 86

Query: 71 SGPSDRHNSKIDS 79
          SGPS RHNS +DS
Sbjct: 87 SGPSKRHNSVVDS 99

[Close]

BLAST of Moc09g38140 vs. TAIR 10
Match: AT1G68765.1 (Putative membrane lipoprotein )

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-08
Identity = 31/82 (37.80%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 1  MASSRFTPIAIFSIFLLLLLSGFCSATRPGKTIDMSDN-NSFDYKTGFRYVGQTFSFLPK 60
          MA  R   + +  +  L   S   +A R G T++M  N     +K         F +LPK
Sbjct: 1  MAPCRTMMVLLCFVLFLAASSSCVAAARIGATMEMKKNIKRLTFKN-----SHIFGYLPK 60

Query: 61 GVPVPPSGPSDRHNSKIDSIPH 82
          GVP+PPS PS RHNS ++S+PH
Sbjct: 61 GVPIPPSAPSKRHNSFVNSLPH 77

[Close]

BLAST of Moc09g38140 vs. TAIR 10
Match: AT3G25655.1 (inflorescence deficient in abscission (IDA)-like 1 )

HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 26/79 (32.91%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 9  IAIFSIFLLLLLSGFCSATRPGKTIDMSDNNSFDYKT------GFRYVGQTFSFLPKGVP 68
          + ++ +FLL+   G  +AT     I +S+      ++      GF + G+ F    K V 
Sbjct: 10 MTLYIVFLLIF--GSYNATARIGPIKLSETEIVQTRSRQEIIGGFTFKGRVFHSFSKRVL 69

Query: 69 VPPSGPSDRHNSKIDSIPH 82
          VPPSGPS RHNS ++++ H
Sbjct: 70 VPPSGPSMRHNSVVNNLKH 86

[Close]

BLAST of Moc09g38140 vs. TAIR 10
Match: AT5G64667.1 (inflorescence deficient in abscission (IDA)-like 2 )

HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04
Identity = 22/60 (36.67%), Postives = 29/60 (48.33%), Query Frame = 0


Query: 14 IFLLLLLSGFCSATRPGKTIDMSDNNSFDYKTGFRYVGQTFSFLPKGVPVPPSGPSDRHN 73
          + LL+LL GFC+  R    +  S  +            Q   FLP+  PVP SGPS +HN
Sbjct: 24 LLLLILLLGFCNGARTNTNVFNSKPHKKHNDAVSSSTKQFLGFLPRHFPVPASGPSRKHN 83

The following BLAST results are available for this feature:

BLAST of Moc09g38140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601330.1	3.0e-21	63.41	Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7032113.1	8.8e-21	63.41	Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KGN52035.1	1.7e-19	65.88	hypothetical protein Csa_008746 [Cucumis sativus]	[more]
KAA0034518.1	3.1e-18	69.33	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]
TYK09072.1	3.1e-18	69.33	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]

BLAST of Moc09g38140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAD7	2.6e-07	37.80	Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1	[more]

BLAST of Moc09g38140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR07	8.1e-20	65.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1	[more]
A0A5D3CCP4	1.5e-18	69.33	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SV51	1.5e-18	69.33	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D2EBI1	5.1e-14	57.53	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G197000v1 PE=...	[more]
A0A2P5SAI3	5.1e-14	57.53	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G180800v1 PE...	[more]

BLAST of Moc09g38140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68765.1	1.8e-08	37.80	Putative membrane lipoprotein	[more]
AT3G25655.1	2.1e-04	32.91	inflorescence deficient in abscission (IDA)-like 1	[more]
AT5G64667.1	3.6e-04	36.67	inflorescence deficient in abscission (IDA)-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..82
None	No IPR available	PANTHER	PTHR33599:SF18	PROTEIN IDA	coord: 8..82
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 8..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g38140.1	Moc09g38140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
cellular_component	GO:0005615	extracellular space