Moc09g35500 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g35500
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionSigma factor binding protein 1
Locationchr9: 27219447 .. 27219905 (+)
RNA-Seq ExpressionMoc09g35500
SyntenyMoc09g35500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTCATCGGCAGAAAACAGGCGAAGATCAGAAGAAGCAAGAAATCGGCCGCCGATTTCAAAGTCGTCTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCCAAGTTCAGATCTCTCGTCCAGAAGCTCACCGGCCAGGACTCCGACGCCGAGCGCTTCATGGAGCTGATCGCCGCCGCCGCCGCCGCCGATCGGAATCATCTTCAGCCATCGTCGTCGGCGGCGTTCCTCGACCACCAACTCCTCTGCGACGCCGACGACGATCAAATCGATCGCGATAATCATCACCGTCTCGTGTCTGGTAACATCGAATCGTCGTATCAATCGTCGATTGCTCCGCCGGATGATTTGATTTTGCAGAACTTCGATGCGAATTTTGCAGACATGTTCCATGGCTTTTTGCACGATTCTTCTACACAAACTCAGATGCCGGGTTTGGCTCTACTGTAA

mRNA sequence

ATGGATGTCATCGGCAGAAAACAGGCGAAGATCAGAAGAAGCAAGAAATCGGCCGCCGATTTCAAAGTCGTCTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCCAAGTTCAGATCTCTCGTCCAGAAGCTCACCGGCCAGGACTCCGACGCCGAGCGCTTCATGGAGCTGATCGCCGCCGCCGCCGCCGCCGATCGGAATCATCTTCAGCCATCGTCGTCGGCGGCGTTCCTCGACCACCAACTCCTCTGCGACGCCGACGACGATCAAATCGATCGCGATAATCATCACCGTCTCGTGTCTGGTAACATCGAATCGTCGTATCAATCGTCGATTGCTCCGCCGGATGATTTGATTTTGCAGAACTTCGATGCGAATTTTGCAGACATGTTCCATGGCTTTTTGCACGATTCTTCTACACAAACTCAGATGCCGGGTTTGGCTCTACTGTAA

Coding sequence (CDS)

ATGGATGTCATCGGCAGAAAACAGGCGAAGATCAGAAGAAGCAAGAAATCGGCCGCCGATTTCAAAGTCGTCTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCCAAGTTCAGATCTCTCGTCCAGAAGCTCACCGGCCAGGACTCCGACGCCGAGCGCTTCATGGAGCTGATCGCCGCCGCCGCCGCCGCCGATCGGAATCATCTTCAGCCATCGTCGTCGGCGGCGTTCCTCGACCACCAACTCCTCTGCGACGCCGACGACGATCAAATCGATCGCGATAATCATCACCGTCTCGTGTCTGGTAACATCGAATCGTCGTATCAATCGTCGATTGCTCCGCCGGATGATTTGATTTTGCAGAACTTCGATGCGAATTTTGCAGACATGTTCCATGGCTTTTTGCACGATTCTTCTACACAAACTCAGATGCCGGGTTTGGCTCTACTGTAA

Protein sequence

MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRLVSGNIESSYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
Homology
BLAST of Moc09g35500 vs. NCBI nr
Match: XP_022139181.1 (uncharacterized protein LOC111010149 [Momordica charantia])

HSP 1 Score: 295.0 bits (754), Expect = 3.6e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0

Query: 1   MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI
Sbjct: 1   MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60

Query: 61  AAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRLVSGNIESSYQSSIAPPDDL 120
           AAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRLVSGNIESSYQSSIAPPDDL
Sbjct: 61  AAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRLVSGNIESSYQSSIAPPDDL 120

Query: 121 ILQNFDANFADMFHGFLHDSSTQTQMPGLALL 153
           ILQNFDANFADMFHGFLHDSSTQTQMPGLALL
Sbjct: 121 ILQNFDANFADMFHGFLHDSSTQTQMPGLALL 152

BLAST of Moc09g35500 vs. NCBI nr
Match: KAG6573793.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.2 bits (487), Expect = 3.3e-45
Identity = 108/155 (69.68%), Postives = 131/155 (84.52%), Query Frame = 0

Query: 1   MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  AAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHHRLVSGNIE-SSYQSSIAPPD 120
           AAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  HRLV+G IE ++YQSS+APP+
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLL--GDDDLTDCD--HRLVAGKIETAAYQSSVAPPE 120

Query: 121 DLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL 153
           DL+++NFDA+FA+MF  FLHD SSTQT+MPG + L
Sbjct: 121 DLVMENFDASFAEMFQSFLHDSSSTQTEMPGFSAL 151

BLAST of Moc09g35500 vs. NCBI nr
Match: XP_022945563.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG7012870.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.2 bits (487), Expect = 3.3e-45
Identity = 108/155 (69.68%), Postives = 131/155 (84.52%), Query Frame = 0

Query: 1   MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  AAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHHRLVSGNIE-SSYQSSIAPPD 120
           AAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  HRLV+G IE ++YQSS+APP+
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLL--GDDDLTDCD--HRLVAGKIETAAYQSSVAPPE 120

Query: 121 DLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL 153
           DL+++NFDA+FA+MF  FLHD SSTQT+MPG + L
Sbjct: 121 DLVMENFDASFAEMFQSFLHDSSSTQTEMPGFSAL 151

BLAST of Moc09g35500 vs. NCBI nr
Match: XP_023542375.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.8 bits (486), Expect = 4.3e-45
Identity = 108/155 (69.68%), Postives = 131/155 (84.52%), Query Frame = 0

Query: 1   MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  AAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHHRLVSGNIE-SSYQSSIAPPD 120
           AAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  HRLV+G IE ++YQSS+APP+
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLL--GDDDLTDCD--HRLVAGKIETAAYQSSVAPPE 120

Query: 121 DLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL 153
           DL++QNFDA+FA+MF  FLH+ SSTQT+MPG + L
Sbjct: 121 DLVMQNFDASFAEMFQSFLHESSSTQTEMPGFSAL 151

BLAST of Moc09g35500 vs. NCBI nr
Match: XP_022966872.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-44
Identity = 107/155 (69.03%), Postives = 131/155 (84.52%), Query Frame = 0

Query: 1   MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           MD+  ++Q+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI
Sbjct: 1   MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  AAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHHRLVSGNIE-SSYQSSIAPPD 120
           AAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  HRLV+G IE ++YQSS+APP+
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLL--GDDDLTDCD--HRLVAGKIETAAYQSSVAPPE 120

Query: 121 DLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL 153
           DL++QNFDA+FA+MF  FLH+ SSTQT+MPG + L
Sbjct: 121 DLVMQNFDASFAEMFQSFLHESSSTQTEMPGFSAL 151

BLAST of Moc09g35500 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.9e-04
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 4  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAA 63
          + RK  K ++   S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+  +   E I +
Sbjct: 22 VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA-VDLQPEPIYS 81

Query: 64 AAAADRNHLQPSSSAA 79
           ++ D N   P+ + A
Sbjct: 82 PSSDDHNLSPPAENLA 96

BLAST of Moc09g35500 vs. ExPASy TrEMBL
Match: A0A6J1CBX0 (uncharacterized protein LOC111010149 OS=Momordica charantia OX=3673 GN=LOC111010149 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.7e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0

Query: 1   MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI
Sbjct: 1   MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60

Query: 61  AAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRLVSGNIESSYQSSIAPPDDL 120
           AAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRLVSGNIESSYQSSIAPPDDL
Sbjct: 61  AAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRLVSGNIESSYQSSIAPPDDL 120

Query: 121 ILQNFDANFADMFHGFLHDSSTQTQMPGLALL 153
           ILQNFDANFADMFHGFLHDSSTQTQMPGLALL
Sbjct: 121 ILQNFDANFADMFHGFLHDSSTQTQMPGLALL 152

BLAST of Moc09g35500 vs. ExPASy TrEMBL
Match: A0A6J1G190 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111449759 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.6e-45
Identity = 108/155 (69.68%), Postives = 131/155 (84.52%), Query Frame = 0

Query: 1   MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  AAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHHRLVSGNIE-SSYQSSIAPPD 120
           AAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  HRLV+G IE ++YQSS+APP+
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLL--GDDDLTDCD--HRLVAGKIETAAYQSSVAPPE 120

Query: 121 DLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL 153
           DL+++NFDA+FA+MF  FLHD SSTQT+MPG + L
Sbjct: 121 DLVMENFDASFAEMFQSFLHDSSSTQTEMPGFSAL 151

BLAST of Moc09g35500 vs. ExPASy TrEMBL
Match: A0A6J1HP65 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111466446 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.0e-45
Identity = 107/155 (69.03%), Postives = 131/155 (84.52%), Query Frame = 0

Query: 1   MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           MD+  ++Q+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI
Sbjct: 1   MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  AAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHHRLVSGNIE-SSYQSSIAPPD 120
           AAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  HRLV+G IE ++YQSS+APP+
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLL--GDDDLTDCD--HRLVAGKIETAAYQSSVAPPE 120

Query: 121 DLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL 153
           DL++QNFDA+FA+MF  FLH+ SSTQT+MPG + L
Sbjct: 121 DLVMQNFDASFAEMFQSFLHESSSTQTEMPGFSAL 151

BLAST of Moc09g35500 vs. ExPASy TrEMBL
Match: A0A6J1GZT9 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111458651 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.1e-34
Identity = 96/138 (69.57%), Postives = 109/138 (78.99%), Query Frame = 0

Query: 1   MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           MDVIG+K  K  R+KKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FMELI
Sbjct: 1   MDVIGKKPPK--RTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELI 60

Query: 61  AAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRLVSGNIE-SSYQSSIAPP-D 120
               AADRN      S+AFLD+Q+L   DD+ IDRD  HRLV+G IE ++YQS +APP D
Sbjct: 61  ----AADRNF----QSSAFLDYQIL--GDDNLIDRD--HRLVAGKIETAAYQSLVAPPED 120

Query: 121 DLILQNFDANFADMFHGF 137
           D +LQNFDA+F +M HGF
Sbjct: 121 DFVLQNFDASFEEMLHGF 124

BLAST of Moc09g35500 vs. ExPASy TrEMBL
Match: D1MWZ4 (Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=CitSIB PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.7e-34
Identity = 100/158 (63.29%), Postives = 118/158 (74.68%), Query Frame = 0

Query: 1   MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           M+V G+KQAK R  K +AADFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFMEL 
Sbjct: 1   MNVTGKKQAK-RSRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMEL- 60

Query: 61  AAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRLVSGNIE-SSYQSSIA---P 120
            A+AA+DRN LQ S+SA F D+QLL   DDD +        V+G +E ++Y+SS+A   P
Sbjct: 61  TASAASDRN-LQSSASATFFDYQLL--GDDDLV--------VAGKVETAAYESSVAALPP 120

Query: 121 PDDL-ILQNFDANFADMFHGFLHDSST-QTQMPGLALL 153
           PDDL +L N DA+F  MFHGF  DS T Q +MPGL  L
Sbjct: 121 PDDLAVLHNLDASFGGMFHGFWFDSFTAQAEMPGLNAL 145

BLAST of Moc09g35500 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-05
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 4  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAA 63
          + RK  K ++   S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+  +   E I +
Sbjct: 22 VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA-VDLQPEPIYS 81

Query: 64 AAAADRNHLQPSSSAA 79
           ++ D N   P+ + A
Sbjct: 82 PSSDDHNLSPPAENLA 96

BLAST of Moc09g35500 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 44.7 bits (104), Expect = 7.9e-05
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0

Query: 12 RRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS 52
          R+S  +    KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Sbjct: 28 RKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDA 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022139181.13.6e-76100.00uncharacterized protein LOC111010149 [Momordica charantia][more]
KAG6573793.13.3e-4569.68Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s... [more]
XP_022945563.13.3e-4569.68sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG7012... [more]
XP_023542375.14.3e-4569.68sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022966872.11.2e-4469.03sigma factor binding protein 1, chloroplastic-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9LDH12.9e-0442.11Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
A0A6J1CBX01.7e-76100.00uncharacterized protein LOC111010149 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A6J1G1901.6e-4569.68sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1HP656.0e-4569.03sigma factor binding protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1GZT92.1e-3469.57sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662... [more]
D1MWZ43.7e-3463.29Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN... [more]
Match NameE-valueIdentityDescription
AT3G56710.12.1e-0542.11sigma factor binding protein 1 [more]
AT2G41180.17.9e-0557.50VQ motif-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 26..52
e-value: 5.1E-12
score: 45.1
NoneNo IPR availablePANTHERPTHR33624:SF14OS07G0687400 PROTEINcoord: 1..134
IPR039335Sigma factor binding protein 1/2PANTHERPTHR33624SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTICcoord: 1..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g35500.1Moc09g35500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051091 positive regulation of DNA-binding transcription factor activity