Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCATATCACCTATGGTTGCTCTGATGAATTCCAACTACGGGAACATCAAACTCCTCCTGTTGTTGCAAACAAAGTAACGATGCTGCAAGAAACATCTATTGAAAATGAGTTTCTTGTTAATCATAACCCCTTACTTGATCTTAATTCTGACATTGTCTCTGTTATGATGACTGATGCAAACACTATGGATGAAAAAATGGCTAAAATGGAAAAGAAGTTCGCTGCATTGATGAAGACAGTGGAAGAAAGAGATTATGAAATCGCTTCCTTGAAGAATCAGATTAAAAACAGAGATGTTGCTAAGTCGAGTCACACCCTTGCTATTAAGATAAATGACAAGGGAAAGATTATCGCTCAAGAAAATCAATCGCAATACTCCATTTCGATCGCTTCGCTGTCTGTTTAG
mRNA sequence
ATGGGTCATATCACCTATGGTTGCTCTGATGAATTCCAACTACGGGAACATCAAACTCCTCCTGTTGTTGCAAACAAAGTAACGATGCTGCAAGAAACATCTATTGAAAATGAGTTTCTTGTTAATCATAACCCCTTACTTGATCTTAATTCTGACATTGTCTCTGTTATGATGACTGATGCAAACACTATGGATGAAAAAATGGCTAAAATGGAAAAGAAGTTCGCTGCATTGATGAAGACAGTGGAAGAAAGAGATTATGAAATCGCTTCCTTGAAGAATCAGATTAAAAACAGAGATGTTGCTAAGTCGAGTCACACCCTTGCTATTAAGATAAATGACAAGGGAAAGATTATCGCTCAAGAAAATCAATCGCAATACTCCATTTCGATCGCTTCGCTGTCTGTTTAG
Coding sequence (CDS)
ATGGGTCATATCACCTATGGTTGCTCTGATGAATTCCAACTACGGGAACATCAAACTCCTCCTGTTGTTGCAAACAAAGTAACGATGCTGCAAGAAACATCTATTGAAAATGAGTTTCTTGTTAATCATAACCCCTTACTTGATCTTAATTCTGACATTGTCTCTGTTATGATGACTGATGCAAACACTATGGATGAAAAAATGGCTAAAATGGAAAAGAAGTTCGCTGCATTGATGAAGACAGTGGAAGAAAGAGATTATGAAATCGCTTCCTTGAAGAATCAGATTAAAAACAGAGATGTTGCTAAGTCGAGTCACACCCTTGCTATTAAGATAAATGACAAGGGAAAGATTATCGCTCAAGAAAATCAATCGCAATACTCCATTTCGATCGCTTCGCTGTCTGTTTAG
Protein sequence
MGHITYGCSDEFQLREHQTPPVVANKVTMLQETSIENEFLVNHNPLLDLNSDIVSVMMTDANTMDEKMAKMEKKFAALMKTVEERDYEIASLKNQIKNRDVAKSSHTLAIKINDKGKIIAQENQSQYSISIASLSV
Homology
BLAST of Moc09g29170 vs. NCBI nr
Match:
KAA0048375.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa] >TYK04075.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])
HSP 1 Score: 99.8 bits (247), Expect = 2.0e-17
Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = 0
Query: 36 ENEFLVNHNPLLDLNSD------IVSVMMTDANTMDEKMAKMEKKFAALMKTVEERDYEI 95
EN + HN L D +++ I+SVM+TD +T +++MA++EKK LMK VEERD+EI
Sbjct: 58 ENPAIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEI 117
Query: 96 ASLKNQIKNRDVAKSSHTLAIKINDKGKIIAQENQSQYSISIASLSV 137
A LKN IK+RD A+SSHT IK +KGK+I QE+Q Q S SIASLSV
Sbjct: 118 ALLKNHIKSRDAAESSHTRTIKNVNKGKVIMQESQPQNSTSIASLSV 164
BLAST of Moc09g29170 vs. NCBI nr
Match:
TYK03695.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 99.4 bits (246), Expect = 2.6e-17
Identity = 62/145 (42.76%), Postives = 85/145 (58.62%), Query Frame = 0
Query: 5 TYGCSDEFQLREHQTPPVVANKVTMLQETSIENEFLVNHNPLLDLNS------------- 64
T+ CS E Q E P VA + + ++ NP +D ++
Sbjct: 20 THSCSREIQSFEDMPPFEVAKNIWEQISKPPKGGIVIKENPAVDEHNSLSECSNEEVPQP 79
Query: 65 DIVSVMMTDANTMDEKMAKMEKKFAALMKTVEERDYEIASLKNQIKNRDVAKSSHTLAIK 124
+I+SVM+T+ +T + +MA++EKK LMK VEERDYEIA LKN I++RD A+SSH +K
Sbjct: 80 NIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVK 139
Query: 125 INDKGKIIAQENQSQYSISIASLSV 137
DKGK + QE+Q Q S SIASLSV
Sbjct: 140 NTDKGKAVMQESQPQNSTSIASLSV 164
BLAST of Moc09g29170 vs. NCBI nr
Match:
KAA0041883.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK05406.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 97.4 bits (241), Expect = 9.8e-17
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 0
Query: 5 TYGCSDEFQLREHQTPPVVANKVTMLQETSIENEFLVNHNPLLD-------------LNS 64
T+ S E Q E P VA + + ++ NP +D +
Sbjct: 20 THSRSREIQSFEDTPPFEVAKNIWEQISKPPKGGIVIKENPAIDEHYSFSEHSSEEMAHP 79
Query: 65 DIVSVMMTDANTMDEKMAKMEKKFAALMKTVEERDYEIASLKNQIKNRDVAKSSHTLAIK 124
+I+SVM+TD +T + +M ++EKK LMK VEERDYEIASLKN I++RD A+SSH +K
Sbjct: 80 NIMSVMVTDVDTSENRMVELEKKVNMLMKVVEERDYEIASLKNHIESRDAAESSHKHTVK 139
Query: 125 INDKGKIIAQENQSQYSISIASLSV 137
DKGK + QE+Q Q S SIASLSV
Sbjct: 140 NTDKGKAVMQESQPQNSTSIASLSV 164
BLAST of Moc09g29170 vs. NCBI nr
Match:
KAA0051994.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 96.3 bits (238), Expect = 2.2e-16
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = 0
Query: 9 SDEFQLREHQTPPVVANKVTMLQETSIENEFLVNHNPLLDLNS-------------DIVS 68
S + Q E P VAN + + ++ NP +D ++ +I+S
Sbjct: 24 SRQIQSSEDMPPFEVANNIWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEAPQPNIMS 83
Query: 69 VMMTDANTMDEKMAKMEKKFAALMKTVEERDYEIASLKNQIKNRDVAKSSHTLAIKINDK 128
VM+TD +T +++MA++EKK LMK VEERD+EIASLKN I++RD +SSHT IK +K
Sbjct: 84 VMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASLKNHIESRDAIESSHTHIIKNVNK 143
Query: 129 GKIIAQENQSQYSISIASLSV 137
GK I QE+Q Q S SIASLSV
Sbjct: 144 GKAIMQESQPQNSTSIASLSV 164
BLAST of Moc09g29170 vs. NCBI nr
Match:
TYK19797.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 95.9 bits (237), Expect = 2.9e-16
Identity = 61/145 (42.07%), Postives = 83/145 (57.24%), Query Frame = 0
Query: 5 TYGCSDEFQLREHQTPPVVANKVTMLQETSIENEFLVNHNPLLD-------------LNS 64
T+ S E Q E P VA + + ++ NP++D +
Sbjct: 20 THSRSREIQSFEDTPPFKVAKNIWEQISKPPKGGIVIKENPVIDEHYSSSKPLSEEMCHP 79
Query: 65 DIVSVMMTDANTMDEKMAKMEKKFAALMKTVEERDYEIASLKNQIKNRDVAKSSHTLAIK 124
+I+S+M+TD +T + +MA++EKK LMK VEERDYEIA LKN I++RD A SSH +K
Sbjct: 80 NIMSIMVTDVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAGSSHKHTVK 139
Query: 125 INDKGKIIAQENQSQYSISIASLSV 137
DKGK + QE+Q Q S SIASLSV
Sbjct: 140 NTDKGKAVMQESQPQNSTSIASLSV 164
BLAST of Moc09g29170 vs. ExPASy TrEMBL
Match:
A0A5D3BY32 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00100 PE=4 SV=1)
HSP 1 Score: 99.8 bits (247), Expect = 9.6e-18
Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = 0
Query: 36 ENEFLVNHNPLLDLNSD------IVSVMMTDANTMDEKMAKMEKKFAALMKTVEERDYEI 95
EN + HN L D +++ I+SVM+TD +T +++MA++EKK LMK VEERD+EI
Sbjct: 58 ENPAIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEI 117
Query: 96 ASLKNQIKNRDVAKSSHTLAIKINDKGKIIAQENQSQYSISIASLSV 137
A LKN IK+RD A+SSHT IK +KGK+I QE+Q Q S SIASLSV
Sbjct: 118 ALLKNHIKSRDAAESSHTRTIKNVNKGKVIMQESQPQNSTSIASLSV 164
BLAST of Moc09g29170 vs. ExPASy TrEMBL
Match:
A0A5D3BX77 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00570 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 62/145 (42.76%), Postives = 85/145 (58.62%), Query Frame = 0
Query: 5 TYGCSDEFQLREHQTPPVVANKVTMLQETSIENEFLVNHNPLLDLNS------------- 64
T+ CS E Q E P VA + + ++ NP +D ++
Sbjct: 20 THSCSREIQSFEDMPPFEVAKNIWEQISKPPKGGIVIKENPAVDEHNSLSECSNEEVPQP 79
Query: 65 DIVSVMMTDANTMDEKMAKMEKKFAALMKTVEERDYEIASLKNQIKNRDVAKSSHTLAIK 124
+I+SVM+T+ +T + +MA++EKK LMK VEERDYEIA LKN I++RD A+SSH +K
Sbjct: 80 NIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVK 139
Query: 125 INDKGKIIAQENQSQYSISIASLSV 137
DKGK + QE+Q Q S SIASLSV
Sbjct: 140 NTDKGKAVMQESQPQNSTSIASLSV 164
BLAST of Moc09g29170 vs. ExPASy TrEMBL
Match:
A0A5D3C4W1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00920 PE=4 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 4.8e-17
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 0
Query: 5 TYGCSDEFQLREHQTPPVVANKVTMLQETSIENEFLVNHNPLLD-------------LNS 64
T+ S E Q E P VA + + ++ NP +D +
Sbjct: 20 THSRSREIQSFEDTPPFEVAKNIWEQISKPPKGGIVIKENPAIDEHYSFSEHSSEEMAHP 79
Query: 65 DIVSVMMTDANTMDEKMAKMEKKFAALMKTVEERDYEIASLKNQIKNRDVAKSSHTLAIK 124
+I+SVM+TD +T + +M ++EKK LMK VEERDYEIASLKN I++RD A+SSH +K
Sbjct: 80 NIMSVMVTDVDTSENRMVELEKKVNMLMKVVEERDYEIASLKNHIESRDAAESSHKHTVK 139
Query: 125 INDKGKIIAQENQSQYSISIASLSV 137
DKGK + QE+Q Q S SIASLSV
Sbjct: 140 NTDKGKAVMQESQPQNSTSIASLSV 164
BLAST of Moc09g29170 vs. ExPASy TrEMBL
Match:
A0A5A7U9H0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001980 PE=4 SV=1)
HSP 1 Score: 96.3 bits (238), Expect = 1.1e-16
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = 0
Query: 9 SDEFQLREHQTPPVVANKVTMLQETSIENEFLVNHNPLLDLNS-------------DIVS 68
S + Q E P VAN + + ++ NP +D ++ +I+S
Sbjct: 24 SRQIQSSEDMPPFEVANNIWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEAPQPNIMS 83
Query: 69 VMMTDANTMDEKMAKMEKKFAALMKTVEERDYEIASLKNQIKNRDVAKSSHTLAIKINDK 128
VM+TD +T +++MA++EKK LMK VEERD+EIASLKN I++RD +SSHT IK +K
Sbjct: 84 VMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASLKNHIESRDAIESSHTHIIKNVNK 143
Query: 129 GKIIAQENQSQYSISIASLSV 137
GK I QE+Q Q S SIASLSV
Sbjct: 144 GKAIMQESQPQNSTSIASLSV 164
BLAST of Moc09g29170 vs. ExPASy TrEMBL
Match:
A0A5D3D8A2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00260 PE=4 SV=1)
HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 61/145 (42.07%), Postives = 83/145 (57.24%), Query Frame = 0
Query: 5 TYGCSDEFQLREHQTPPVVANKVTMLQETSIENEFLVNHNPLLD-------------LNS 64
T+ S E Q E P VA + + ++ NP++D +
Sbjct: 20 THSRSREIQSFEDTPPFKVAKNIWEQISKPPKGGIVIKENPVIDEHYSSSKPLSEEMCHP 79
Query: 65 DIVSVMMTDANTMDEKMAKMEKKFAALMKTVEERDYEIASLKNQIKNRDVAKSSHTLAIK 124
+I+S+M+TD +T + +MA++EKK LMK VEERDYEIA LKN I++RD A SSH +K
Sbjct: 80 NIMSIMVTDVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAGSSHKHTVK 139
Query: 125 INDKGKIIAQENQSQYSISIASLSV 137
DKGK + QE+Q Q S SIASLSV
Sbjct: 140 NTDKGKAVMQESQPQNSTSIASLSV 164
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0048375.1 | 2.0e-17 | 55.14 | retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa] ... | [more] |
TYK03695.1 | 2.6e-17 | 42.76 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0041883.1 | 9.8e-17 | 42.76 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK05406.1 ty3-gyp... | [more] |
KAA0051994.1 | 2.2e-16 | 43.97 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gyp... | [more] |
TYK19797.1 | 2.9e-16 | 42.07 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BY32 | 9.6e-18 | 55.14 | Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa... | [more] |
A0A5D3BX77 | 1.3e-17 | 42.76 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5D3C4W1 | 4.8e-17 | 42.76 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7U9H0 | 1.1e-16 | 43.97 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3D8A2 | 1.4e-16 | 42.07 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
Match Name | E-value | Identity | Description | |