Moc09g14540 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g14540
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr9: 12545683 .. 12546426 (-)
RNA-Seq Expression	Moc09g14540
Synteny	Moc09g14540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGCTTTGATGGATTTACTATTGACAAATTTGATGGGACAGACTTTGATTACTGGAAGATGCAGATAAAGGATTTTATATATGTCATGGACAAGAAATTTCATCTACCATTGAAAGGAAAACCAGAAGATATGAAAGAAGAAGATTGGAAGCATCTTGACAGAAAAGTACTAGGAATTATTCGCTCGACTTTGTCAAAGAACGTCGTTCACCATGTGGTAAATGAGACAACGACGGTTGGTCTGATGAAAACCTTGTCAGACATATATGAGAAGCCCTATGCGAACAAGTTTTGTCTTTTGACAAAACTCTTTGATTTAAAAATGGCCGATGGTGTGCCTTTTGTTGAACATTTGAATGAATTCAATAGGATAATCAACAAGTTAATCTCTCTGAAGGTTGAATTCGACGAAGAACCGAAAGCTATCATTTTGTTGATATCTTTACCCGATAGTTGGGAAGTAATGAAAGTAACTACAACCTACTCTTTTGGTACTGGAAAGTTGAAAATTGTAGATATTATAGATGCAGCTTTTGCAGAAGAGATTCGTAGAAGGGATTTTGGTGTGACTTTTACTCCGATTTCAAGCTTCAAAGCCAAAGGGAGAGGGAAAAATATTGACAATAAGCCTTGTAAAGGCAAAGGCAACAAAGGTAGAGGAAAAGGTAAGCAAGATATTGAGTGCTACTACTGCCACAAGAAGGGTCACATAAAAGCAAACTGTAGAGAGTTGAAATGA

mRNA sequence

ATGGCTAGCTTTGATGGATTTACTATTGACAAATTTGATGGGACAGACTTTGATTACTGGAAGATGCAGATAAAGGATTTTATATATGTCATGGACAAGAAATTTCATCTACCATTGAAAGGAAAACCAGAAGATATGAAAGAAGAAGATTGGAAGCATCTTGACAGAAAAGTACTAGGAATTATTCGCTCGACTTTGTCAAAGAACGTCGTTCACCATGTGGTAAATGAGACAACGACGGTTGGTCTGATGAAAACCTTGTCAGACATATATGAGAAGCCCTATGCGAACAAGTTTTGTCTTTTGACAAAACTCTTTGATTTAAAAATGGCCGATGGTGTGCCTTTTGTTGAACATTTGAATGAATTCAATAGGATAATCAACAAGTTAATCTCTCTGAAGGTTGAATTCGACGAAGAACCGAAAGCTATCATTTTGTTGATATCTTTACCCGATAGTTGGGAAGTAATGAAAGTAACTACAACCTACTCTTTTGGTACTGGAAAGTTGAAAATTGTAGATATTATAGATGCAGCTTTTGCAGAAGAGATTCGTAGAAGGGATTTTGGTGTGACTTTTACTCCGATTTCAAGCTTCAAAGCCAAAGGGAGAGGGAAAAATATTGACAATAAGCCTTGTAAAGGCAAAGGCAACAAAGGTAGAGGAAAAGGTAAGCAAGATATTGAGTGCTACTACTGCCACAAGAAGGGTCACATAAAAGCAAACTGTAGAGAGTTGAAATGA

Coding sequence (CDS)

ATGGCTAGCTTTGATGGATTTACTATTGACAAATTTGATGGGACAGACTTTGATTACTGGAAGATGCAGATAAAGGATTTTATATATGTCATGGACAAGAAATTTCATCTACCATTGAAAGGAAAACCAGAAGATATGAAAGAAGAAGATTGGAAGCATCTTGACAGAAAAGTACTAGGAATTATTCGCTCGACTTTGTCAAAGAACGTCGTTCACCATGTGGTAAATGAGACAACGACGGTTGGTCTGATGAAAACCTTGTCAGACATATATGAGAAGCCCTATGCGAACAAGTTTTGTCTTTTGACAAAACTCTTTGATTTAAAAATGGCCGATGGTGTGCCTTTTGTTGAACATTTGAATGAATTCAATAGGATAATCAACAAGTTAATCTCTCTGAAGGTTGAATTCGACGAAGAACCGAAAGCTATCATTTTGTTGATATCTTTACCCGATAGTTGGGAAGTAATGAAAGTAACTACAACCTACTCTTTTGGTACTGGAAAGTTGAAAATTGTAGATATTATAGATGCAGCTTTTGCAGAAGAGATTCGTAGAAGGGATTTTGGTGTGACTTTTACTCCGATTTCAAGCTTCAAAGCCAAAGGGAGAGGGAAAAATATTGACAATAAGCCTTGTAAAGGCAAAGGCAACAAAGGTAGAGGAAAAGGTAAGCAAGATATTGAGTGCTACTACTGCCACAAGAAGGGTCACATAAAAGCAAACTGTAGAGAGTTGAAATGA

Protein sequence

MASFDGFTIDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKGKPEDMKEEDWKHLDRKVLGIIRSTLSKNVVHHVVNETTTVGLMKTLSDIYEKPYANKFCLLTKLFDLKMADGVPFVEHLNEFNRIINKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRRRDFGVTFTPISSFKAKGRGKNIDNKPCKGKGNKGRGKGKQDIECYYCHKKGHIKANCRELK

Homology

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BLAST of Moc09g14540 vs. NCBI nr
Match: KAG7561662.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 236.1 bits (601), Expect = 3.2e-58
Identity = 124/241 (51.45%), Postives = 163/241 (67.63%), Query Frame = 0


Query: 9   IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKGKPEDMKEEDWKHLDRKVLGIIRSTLSK 68
           I KFDGTDF +W+MQI+D++Y   KK H PL  KPE M +E+W  LDR+VLG+IR TLSK
Sbjct: 11  IGKFDGTDFAFWRMQIEDYLY--GKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSK 70

Query: 69  NVVHHVVNETTTVGLMKTLSDIYEKPYA-NKFCLLTKLFDLKMADGVPFVEHLNEFNRII 128
           NV H+V  E TT GLMK LSD+YEKP A NK  L+ KLF LKM +G P   H+NEFN I+
Sbjct: 71  NVAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIV 130

Query: 129 NKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRRR 188
           N+L S+++EFD+E +A+IL+ SLP+SWE M+   + S G  KLK VD+ D    EE+RR 
Sbjct: 131 NQLSSVEIEFDDEVRALILIASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRRI 190

Query: 189 DFGVTFTPISSFKAKGRG-----KNIDNKPCKGKGNKGRGKGKQDIECYYCHKKGHIKAN 244
           D G T T  S+F  + RG     +N +    K +  KG+ K ++ +EC+ C K GH K+N
Sbjct: 191 DTGETSTS-SAFNVENRGRDQNRRNQNRGRSKSRNGKGQSKSRKPVECWNCGKTGHFKSN 248

[Close]

BLAST of Moc09g14540 vs. NCBI nr
Match: KAG7584790.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 235.0 bits (598), Expect = 7.2e-58
Identity = 124/241 (51.45%), Postives = 163/241 (67.63%), Query Frame = 0


Query: 9   IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKGKPEDMKEEDWKHLDRKVLGIIRSTLSK 68
           I KFDGTDF +W+MQI+D++Y   KK H PL  KPE M +E+W  LDR+VLG+IR TLSK
Sbjct: 11  IGKFDGTDFAFWRMQIEDYLY--GKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSK 70

Query: 69  NVVHHVVNETTTVGLMKTLSDIYEKPYA-NKFCLLTKLFDLKMADGVPFVEHLNEFNRII 128
           NV H+V  E TT GLMK LSD+YEKP A NK  L+ KLF LKM +G P   H+NEFN I+
Sbjct: 71  NVAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIV 130

Query: 129 NKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRRR 188
           N+L S+++EFD+E +A+ILL SLP+SWE M+   + S G  KLK VD+ D    EE+RR 
Sbjct: 131 NQLSSVEIEFDDEVRALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRRI 190

Query: 189 DFGVTFTPISSFKAKGRG-----KNIDNKPCKGKGNKGRGKGKQDIECYYCHKKGHIKAN 244
           D G T +  S+F  + RG     +N +    K +  KG+ K ++ +EC+ C K GH K+N
Sbjct: 191 DTGET-SMSSAFNVENRGRDQNRRNQNRGRSKSRNGKGQSKSRKPVECWNCGKTGHFKSN 248

[Close]

BLAST of Moc09g14540 vs. NCBI nr
Match: KAG7593230.1 (Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-56
Identity = 123/238 (51.68%), Postives = 160/238 (67.23%), Query Frame = 0


Query: 9   IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKGKPEDMKEEDWKHLDRKVLGIIRSTLSK 68
           I KFDGTDF +W+MQI+D++Y   KK H PL  KPE M +E+W  LDR+VLG+IR TLSK
Sbjct: 11  IGKFDGTDFAFWRMQIEDYLY--GKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSK 70

Query: 69  NVVHHVVNETTTVGLMKTLSDIYEKPYA-NKFCLLTKLFDLKMADGVPFVEHLNEFNRII 128
           NV H+V  E TT GLMK LSD+YEKP A NK  L+ KLF LKM +G P   H+NEFN I+
Sbjct: 71  NVAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIV 130

Query: 129 NKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRRR 188
           N+L S+++EFD+E +A+ILL SLP+SWE M+   + S G  KLK VD+ D    EE+RR 
Sbjct: 131 NQLSSVEIEFDDEVRALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRRI 190

Query: 189 DFGVTFTPISSFKAKGRG-----KNIDNKPCKGKGNKGRGKGKQDIECYYCHKKGHIK 241
           D G T T  S+F  + RG     +N +    K +  KG+ K ++ +EC+ C K GH K
Sbjct: 191 DTGETSTS-SAFNVENRGRDQNRRNQNRGRSKSRNGKGQSKSRKPVECWNCGKTGHFK 245

[Close]

BLAST of Moc09g14540 vs. NCBI nr
Match: CAN81130.1 (hypothetical protein VITISV_003944 [Vitis vinifera])

HSP 1 Score: 225.7 bits (574), Expect = 4.3e-55
Identity = 122/248 (49.19%), Postives = 165/248 (66.53%), Query Frame = 0


Query: 9   IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKG-KPEDMKEEDWKHLDRKVLGIIRSTLS 68
           I+KFDGTDF YW+MQI+D++Y   +K HLPL G KPE MK E+W  LDR+VLG+IR TLS
Sbjct: 11  IEKFDGTDFAYWRMQIEDYLY--GRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLS 70

Query: 69  KNVVHHVVNETTTVGLMKTLSDIYEKPYA-NKFCLLTKLFDLKMADGVPFVEHLNEFNRI 128
           ++V H+VV E TT  LMK LS +YEKP A NK  L+TKLF+LKMA+     +HLNEFN I
Sbjct: 71  RSVAHNVVKEKTTXDLMKALSGMYEKPSANNKVHLMTKLFNLKMAENASVAQHLNEFNTI 130

Query: 129 INKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRR 188
            N+L S++++FD+E +A+I+L SLP+SWE M++  + S G  KLK  DI D   AEEIRR
Sbjct: 131 TNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRR 190

Query: 189 RDFGVTFTPISSFKAKGRGKNIDNKPCKGKG-------NKGRGKGKQDIECYYCHKKGHI 248
           RD G T    S+   + RG+  +    +G+        N+ + +  Q ++C+ C K GH 
Sbjct: 191 RDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHF 250

[Close]

BLAST of Moc09g14540 vs. NCBI nr
Match: RVW25839.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 225.3 bits (573), Expect = 5.7e-55
Identity = 121/248 (48.79%), Postives = 164/248 (66.13%), Query Frame = 0


Query: 9   IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKG-KPEDMKEEDWKHLDRKVLGIIRSTLS 68
           I+KFDGTDF YW+MQI+D++Y   +K HLPL G KPE MK E+W  LDR+VLG+IR TLS
Sbjct: 11  IEKFDGTDFAYWRMQIEDYLY--GRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLS 70

Query: 69  KNVVHHVVNETTTVGLMKTLSDIYEKPYA-NKFCLLTKLFDLKMADGVPFVEHLNEFNRI 128
           ++V H+VV E TT  LMK LS +YEKP A NK  L+ KLF+LKMA+     +HLNEFN I
Sbjct: 71  RSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTI 130

Query: 129 INKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRR 188
            N+L S++++FD+E +A+I+L SLP+SWE M++  + S G  KLK  DI D   AEEIRR
Sbjct: 131 TNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSIGKEKLKYNDIRDLILAEEIRR 190

Query: 189 RDFGVTFTPISSFKAKGRGKNIDNKPCKGKG-------NKGRGKGKQDIECYYCHKKGHI 248
           RD G T    S+   + RG+  +    +G+        N+ + +  Q ++C+ C K GH 
Sbjct: 191 RDAGETSGSGSALNLETRGRGNNKNSNQGRSNSRNSNRNRSKSRSSQQVQCWNCGKTGHF 250

[Close]

BLAST of Moc09g14540 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-25
Identity = 76/244 (31.15%), Postives = 131/244 (53.69%), Query Frame = 0


Query: 7   FTIDKFDGTD-FDYWKMQIKDFIYVMDKKFHLPL---KGKPEDMKEEDWKHLDRKVLGII 66
           + + KF+G + F  W+ +++D +  + +  H  L     KP+ MK EDW  LD +    I
Sbjct: 6   YEVAKFNGDNGFSTWQRRMRDLL--IQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAI 65

Query: 67  RSTLSKNVVHHVVNETTTVGLMKTLSDIY-EKPYANKFCLLTKLFDLKMADGVPFVEHLN 126
           R  LS +VV+++++E T  G+   L  +Y  K   NK  L  +L+ L M++G  F+ HLN
Sbjct: 66  RLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLN 125

Query: 127 EFNRIINKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFA 186
            FN +I +L +L V+ +EE KAI+LL SLP S++   + TT   G   +++ D+  A   
Sbjct: 126 VFNGLITQLANLGVKIEEEDKAILLLNSLPSSYD--NLATTILHGKTTIELKDVTSALLL 185

Query: 187 -EEIRRRDFGVTFTPISSFKAKGRGKNIDNKPCKGKGNKGRGKGKQDI-ECYYCHKKGHI 244
            E++R++        I+  + +   ++ +N    G   K + + K  +  CY C++ GH 
Sbjct: 186 NEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHF 245

[Close]

BLAST of Moc09g14540 vs. ExPASy TrEMBL
Match: A0A2N9IKI1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31378 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 130/245 (53.06%), Postives = 171/245 (69.80%), Query Frame = 0


Query: 9   IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKG-KPEDMKEEDWKHLDRKVLGIIRSTLS 68
           I+KFDGTDF YW+MQI+D++Y   KK HLPL G KPEDM++ +W  LDR+VLG+IR TLS
Sbjct: 11  IEKFDGTDFGYWRMQIEDYLY--GKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLS 70

Query: 69  KNVVHHVVNETTTVGLMKTLSDIYEKPYA-NKFCLLTKLFDLKMADGVPFVEHLNEFNRI 128
           + V H+VV E TT  LM  L  +YEKP A NK  L+ KLF+LKMA+G    +HLNEFN I
Sbjct: 71  RTVAHNVVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTI 130

Query: 129 INKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRR 188
            N+L S+++EFD+E +A+I+L SLP+SWE M++  + S G GKLK  DI D    EE+RR
Sbjct: 131 TNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRR 190

Query: 189 RDFGVTFTPIS--SFKAKGRGKNIDNKPCKGKGNKGRGKGK--QDIECYYCHKKGHIKAN 248
           RD G T +  S  + +A+GRGK+ +    + K  KGR K K  + +EC+ C K GHI+ N
Sbjct: 191 RDAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 250

[Close]

BLAST of Moc09g14540 vs. ExPASy TrEMBL
Match: A0A2N9GHK9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26945 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 130/245 (53.06%), Postives = 171/245 (69.80%), Query Frame = 0


Query: 9   IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKG-KPEDMKEEDWKHLDRKVLGIIRSTLS 68
           I+KFDGTDF YW+MQI+D++Y   KK HLPL G KPEDM++ +W  LDR+VLG+IR TLS
Sbjct: 11  IEKFDGTDFGYWRMQIEDYLY--GKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLS 70

Query: 69  KNVVHHVVNETTTVGLMKTLSDIYEKPYA-NKFCLLTKLFDLKMADGVPFVEHLNEFNRI 128
           + V H+VV E TT  LM  L  +YEKP A NK  L+ KLF+LKMA+G    +HLNEFN I
Sbjct: 71  RTVAHNVVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTI 130

Query: 129 INKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRR 188
            N+L S+++EFD+E +A+I+L SLP+SWE M++  + S G GKLK  DI D    EE+RR
Sbjct: 131 TNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRR 190

Query: 189 RDFGVTFTPIS--SFKAKGRGKNIDNKPCKGKGNKGRGKGK--QDIECYYCHKKGHIKAN 248
           RD G T +  S  + +A+GRGK+ +    + K  KGR K K  + +EC+ C K GHI+ N
Sbjct: 191 RDAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 250

[Close]

BLAST of Moc09g14540 vs. ExPASy TrEMBL
Match: A0A2N9J3Y8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59166 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 130/245 (53.06%), Postives = 171/245 (69.80%), Query Frame = 0


Query: 9   IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKG-KPEDMKEEDWKHLDRKVLGIIRSTLS 68
           I+KFDGTDF YW+MQI+D++Y   KK HLPL G KPEDM++ +W  LDR+VLG+IR TLS
Sbjct: 11  IEKFDGTDFGYWRMQIEDYLY--GKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLS 70

Query: 69  KNVVHHVVNETTTVGLMKTLSDIYEKPYA-NKFCLLTKLFDLKMADGVPFVEHLNEFNRI 128
           + V H+VV E TT  LM  L  +YEKP A NK  L+ KLF+LKMA+G    +HLNEFN I
Sbjct: 71  RTVAHNVVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTI 130

Query: 129 INKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRR 188
            N+L S+++EFD+E +A+I+L SLP+SWE M++  + S G GKLK  DI D    EE+RR
Sbjct: 131 TNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRR 190

Query: 189 RDFGVTFTPIS--SFKAKGRGKNIDNKPCKGKGNKGRGKGK--QDIECYYCHKKGHIKAN 248
           RD G T +  S  + +A+GRGK+ +    + K  KGR K K  + +EC+ C K GHI+ N
Sbjct: 191 RDAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 250

[Close]

BLAST of Moc09g14540 vs. ExPASy TrEMBL
Match: A0A2N9G6Q3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22753 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 130/245 (53.06%), Postives = 171/245 (69.80%), Query Frame = 0


Query: 9   IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKG-KPEDMKEEDWKHLDRKVLGIIRSTLS 68
           I+KFDGTDF YW+MQI+D++Y   KK HLPL G KPEDM++ +W  LDR+VLG+IR TLS
Sbjct: 11  IEKFDGTDFGYWRMQIEDYLY--GKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLS 70

Query: 69  KNVVHHVVNETTTVGLMKTLSDIYEKPYA-NKFCLLTKLFDLKMADGVPFVEHLNEFNRI 128
           + V H+VV E TT  LM  L  +YEKP A NK  L+ KLF+LKMA+G    +HLNEFN I
Sbjct: 71  RTVAHNVVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTI 130

Query: 129 INKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRR 188
            N+L S+++EFD+E +A+I+L SLP+SWE M++  + S G GKLK  DI D    EE+RR
Sbjct: 131 TNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRR 190

Query: 189 RDFGVTFTPIS--SFKAKGRGKNIDNKPCKGKGNKGRGKGK--QDIECYYCHKKGHIKAN 248
           RD G T +  S  + +A+GRGK+ +    + K  KGR K K  + +EC+ C K GHI+ N
Sbjct: 191 RDAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 250

[Close]

BLAST of Moc09g14540 vs. ExPASy TrEMBL
Match: A0A2N9JBD5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61661 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 130/245 (53.06%), Postives = 171/245 (69.80%), Query Frame = 0


Query: 9   IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKG-KPEDMKEEDWKHLDRKVLGIIRSTLS 68
           I+KFDGTDF YW+MQI+D++Y   KK HLPL G KPEDM++ +W  LDR+VLG+IR TLS
Sbjct: 11  IEKFDGTDFGYWRMQIEDYLY--GKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLS 70

Query: 69  KNVVHHVVNETTTVGLMKTLSDIYEKPYA-NKFCLLTKLFDLKMADGVPFVEHLNEFNRI 128
           + V H+VV E TT  LM  L  +YEKP A NK  L+ KLF+LKMA+G    +HLNEFN I
Sbjct: 71  RTVAHNVVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTI 130

Query: 129 INKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRR 188
            N+L S+++EFD+E +A+I+L SLP+SWE M++  + S G GKLK  DI D    EE+RR
Sbjct: 131 TNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRR 190

Query: 189 RDFGVTFTPIS--SFKAKGRGKNIDNKPCKGKGNKGRGKGK--QDIECYYCHKKGHIKAN 248
           RD G T +  S  + +A+GRGK+ +    + K  KGR K K  + +EC+ C K GHI+ N
Sbjct: 191 RDAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 250

[Close]

BLAST of Moc09g14540 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-18
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 10 DKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKGKPEDMKEEDWKHLDRKVLGIIRSTLSKN 69
          DK DGT + + +M+I+D++Y   KK H PL  K E M ++DW  L R+VL +IR T+SKN
Sbjct: 7  DKVDGTSYSFCRMKIEDYLY--GKKLHQPLGKKVETMSQDDWNILYRQVLDVIRLTISKN 66

Query: 70 VVHHVVNETTTVGLMKTLSDIYEKPYAN 98
          + H+V  E +  GLMK LSDIY+KP  N
Sbjct: 67 IAHNVAKEKSPDGLMKVLSDIYKKPSTN 92

The following BLAST results are available for this feature:

BLAST of Moc09g14540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7561662.1	3.2e-58	51.45	Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7584790.1	7.2e-58	51.45	Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7593230.1	1.8e-56	51.68	Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
CAN81130.1	4.3e-55	49.19	hypothetical protein VITISV_003944 [Vitis vinifera]	[more]
RVW25839.1	5.7e-55	48.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Moc09g14540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.9e-25	31.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Moc09g14540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9IKI1	2.4e-59	53.06	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31378 PE=4 SV=1	[more]
A0A2N9GHK9	2.4e-59	53.06	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26945 PE=4 SV=1	[more]
A0A2N9J3Y8	2.4e-59	53.06	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59166 PE=4 SV=1	[more]
A0A2N9G6Q3	2.4e-59	53.06	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22753 PE=4 SV=1	[more]
A0A2N9JBD5	2.4e-59	53.06	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61661 PE=4 SV=1	[more]

BLAST of Moc09g14540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29785.1	3.5e-18	50.00	unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 229..245 e-value: 0.008 score: 24.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 230..245 score: 9.059338
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 51..187 e-value: 4.1E-23 score: 81.7
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 7..245
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 7..245
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 216..245

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g14540.1	Moc09g14540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding