Moc09g14470 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g14470
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	leucine-rich repeat extensin-like protein 2
Location	chr9: 12453222 .. 12457525 (+)
RNA-Seq Expression	Moc09g14470
Synteny	Moc09g14470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCCAACTATTACTACATTTGCTCAGACGAGGGCACCTCCACCGGAGTGGACTTCATTTTACGAGCGTCAACTTGGGTCTTCGATTTACTCGGTAGTGGTGGGCGATCATCCCTTCCCGGCCTGCCATTAGGCAGTCGCGATCTCCATTGTCGCTCTCATTACTTCTAGAACGAGAACCATTGCCTTCAGCCATTTTAGAGCAAAAGACTTACTATGCCGGTTTCCCACAGACGGCGCCAAATGTTGATGTTGTTTTCCGATCGAACTTGTACGTCGGTGACGAGCTGACATGGACAGAGCTCCAAGGTGCTGGAAAGTGAACCTGCACAAGGAACAGACACTCCGACGCCCAAGTCAAATATGAGCTCAAAAATTTTAGGTCGTTCTCAAAGAGAATTGCATACCTGACTCATGGGTGGAATGTCCTTTTTATAGGCATGCTGGGGGAGACAGGCCAATTAGTTGGTTAGGATGTGCGGTTATTCCTGCCGGGCACCCATGTCGGCAGTCGAGCCTGAGGTCGGAGTCTCAGGTCGGTTCCGAGCATATTCTCGGCTTAGGTCAGTATGAAGCATTGGATTACGACATTAATTATTAATGTCTCGAGCTGAGAATATGTCCACATGTCTAGTTGATTTTTGACCACCAACATTCCTTAGTCTACAGTTAAACGTATTTTGCGATATCTAAATGGCACCAAGGATCTTGGCATCTTGTTCCAGAATTAGTGCATTGATCTTTTCTGCCTTTTGTGATGCTGATTGGACTGGAGATGCTATTGATCACCGATCTACCACTGACTTTTTTGCATTTGTGGGCTTAAGCCCTATTTCTTGGTCGACAAAAAGCAATATACTGTGCCTCGTTCTTCTACTGAAGCTGAGTATTGGTCTTTGGCCACTACCACTACTAACTTATACTGATTGCACCAACTTTTATGTGACTTGCATGTCTATCTGAAAGACCCTCATATTATGGTGTGATAATGTTTTAGCAATATCTCTTGCCAGCAACCCGGTGTTCCATGCCTGCACCAAACACAAAGAAATTAATTATCATTTTGTTCGTGAAAAGGTCGTGCGCAGCGATATTTCTGTTCACTTTGTGTCCTCCATAGACCAAATTGCTGATCTATTCACCAAGGCGTTGTCTACACGGGCCTTTTTATCTTTCCGTAGTAAACTCATGTTTTCTGTTCAACCTTGAGTTTGAGGGATGTATTAGGTCAATTGTTATAACCTCCTCTAGTTATGATTGTCTTTGTAAATTAGCTAACTTATTCAGTTTGTAAATTAGTTGTACTTAGGTTCTATAAAAAGGCTATTTTTATTCACTTCAAAATCATCTCAATACATAAATTGTTCTATCTTCATCCATCTCTTTTAACTCTGTTAGTAAGGAAATAACTTGCACCAGTTAAACTACAGAATGCAGTTGGTAAAAGTTAGAAAAGTCAAATGAGAAATATCACACAACAATCATATTTTAACAGCTTCTCTCAAACGAGGCAAAGGAGAAATTTGAAGCCCAAATTTGTCTCAAAGAGCCTAAAATCGAGGAACAAAGAAAAATTTGAACCTCAATATCGACAAAGTATTGTAGGGAGCCAAGATCTTTGATGACAAAAATGGTGGATATTGTAACCTAATAGTGGTTCGACCAAATTAGACTTCAATTCCTACCCACCTCTTAGATATTTGACTAAAAAGACCAATTACACTTTCCATAGCTTAAAGTCCCATCATTACAATTGTTCTTTTTTAGGAGAGCAAGAATGGATCTTTCCATGTTTATGATCTAATCGTTACAATGCTATTTTCCAAATTCAAGAGCAAGCTTTGAAAATTTAAAAGTATTTAATATAATCTCACAAACTCACTCAAAAGTGTAGATTAACAAATCTAAGCTCTCAAAATTTGTATGAAAATCCTTACAAATAAAATATCTAAAACAACTATAACAAAAATGAAAATTACAAGTTCAAAGCAAGATTTTAAATGTCGATGTCGATGGAAAGGTCGAGGTTTCAATTTCATGGAAATATTGATTGGAATATCGATAAAATATCGATGTCATGGATATTTCTGTAAAAATTAAAGAAATTAAAAAATCGTAAAAAATATTTATTTGTTAATTTAAATATTTGTCAAATATTTAGTGTTGAGGATTAATTTTAACAAATAAATATTTTTTTTATTTCTAAGTTAAAAATGATTAATTTTAATATTAGGTATATTAGTGACATTTTGTTGATATATATATATATTTTGGAAAATACTTGCTTCCTAATGAGGAGTAACATTGTCCTTCTCACCACTAAATATTTGACAACTCATTATTATTTTAAAAAAGTTTATGTTTTACATTTCTCTCTCTTAATTGTCAAATATTTAGTGGTGGGGAGGACAAGGTTCCTCCTTATTGTTAAGGAGGCAAGGATTTTCCATTTTTTTTTCATATTTTGTTGATTTTTTTTTATTATGATATAAATGTCGATTTATCTCTCATGTCGACGTCGAACTTATAAATACATGAACATTTCGATGGAAATGTCGATGTCGACGGATATTAAATACCATGCTCAAAAGTCACTAAAAACGATGAGAAATAAATGAGAAAGATCTCTTATTTTTCACAAAAAAATTCACAAATTTCTTTTATAACTTTCGGCCATTTGAAGAGGAGGGACTCAAAATTAGCCGTTGGCCACATGTTAGAATGCGATTGGAGGAAGGAATTTGATGTTGGAAAAATAATAAGATACTTGCACTAAAAAGAAAACGTGACTTTTGAGTAAGAAATTGACGACTCACCCTCTTCATCATTGATGCGCTAAGAAGAAATCGCAGACGGTTGTGATTGCTTTTCGTGGAGATGCATGTGAGTGGGCTAAAAATTTCTGTCCGGAACTTTTATTTCCCTTTTTTTTTTTTGAAAATTGAGATGCCACGCGTCCGAAATTAATCCATCATACTTGGATCAAATTACAACCCTTAGATATAAGGTTCACCAAAACTAATATACATGCCTCCGCCCTCCACCCTACATGTTGTACTAAAAAATAATATACATGAAACAAATCTTCAATTCAAAATGGATTTAATCTAGTCATTTCATATATTTATATGTAGGGAAAAATCCTTGCTCCTTCAATCAAATTTTATCCTTAGAATTATTTAAAAATTGACAAATTATTTTTTTAAAAGAAATTTTTACTTTTGCATTTTTCTCTCTCAATCGTAAAACATTTAATAGTGGTAAGGACAAGATTAAAAATAATACTACATGCATCCCTTCCATGGCTTTAAATATCCGTTGGCACGTCGACATTTCTATCGACATTATCCATGTTTTTATGGATTCGATATCGACATGAGAGGTAAATTGACATTTCCATCATATTACAAGAAAATCGATAAAATATGAAAAATATTAATAAAATGTCACTAATATATACATAATATTAAGATTAATTATTTTTAACTAATTTAGAAATAGAAAAATATTTATTTGTTCATTTAAATAATTTTTGCGAATTTTTTTTTATTTTTCTAATTTTTACAGAAATATCATCGATATCGACATTTTATCCATATTTTAATGAAATTGAGATCTCGACATTTTGATCGACATCGACATTTAAAACCTTCATCCATTCCCACATGAATATAAATAAAGCATTTCCTTATTTTCTTCCTAACTTTTCAAAACAAATAAACGAGGTGTCACGAAGATGTGAGCACCATTTAAGTATTTGATTGGAGCGTGAGCAATGAGCGGAGAGTGGGAAAAGGGTAAAGTTGGAGGACAAAGTAAAGCAACGGTCAAAAGATTTGAAATTAAAATCCCCGATTTTGAAAGGATTCCACAGGGCAACTTCAGAAATCTAATCTAATCCCAAAATGCTGAAGGCCGCCAAGAAACTCAAGTTCTGGTCCAAAGACAAGAAGAGAAGAAAGACTCGCGATTCCTCCTATCTTCCTCCTCCGCCGCCGCCGTACTGTTCCTGCTCTTGCTCTTACTCTGCGATCCGGCCCTCTGCTCCGCCGCTGCCGCCCTGGCTAGACGATCGGACTCTTCTCTTGCAATCGGAACCCCCAGCGGCCACCGGAGTTGAAGCGGCGGCGTCGTACCAGCAATACACGGCTCCGAATCCGGTGTACGGATTGCCGATTGTGGAAATGGGTAGCATAAGGACAAGGGAGAGATCTCTGTTCACCGATTTGGGCGCTAGGTTGATTAGGTGCTTCTGTCCATGTCTTCACGTTCGAGAAGCTTATTACCTGCCAGATCAGTGA

mRNA sequence

ATGTCTGCCAACTATTACTACATTTGCTCAGACGAGGGCACCTCCACCGGAGTGGACTTCATTTTACGAGCGTCAACTTGGGTCTTCGATTTACTCGAACGAGAACCATTGCCTTCAGCCATTTTAGAGCAAAAGACTTACTATGCCGGTTTCCCACAGACGGCGCCAAATGTTGATGTTGTTTTCCGATCGAACTTGTACGTCGGTGACGAGCTGACATGGACAGAGCTCCAAGGTGCTGGAAAGCATGCTGGGGGAGACAGGCCAATTAGTTGGTTAGGATGTGCGGTTATTCCTGCCGGGCACCCATGTCGGCAGTCGAGCCTGAGGTCGGAGTCTCAGGTCGGTTCCGAGCATATTCTCGGCTTAGACGATCGGACTCTTCTCTTGCAATCGGAACCCCCAGCGGCCACCGGAGTTGAAGCGGCGGCGTCGTACCAGCAATACACGGCTCCGAATCCGGTGTACGGATTGCCGATTGTGGAAATGGGTAGCATAAGGACAAGGGAGAGATCTCTGTTCACCGATTTGGGCGCTAGGTTGATTAGGTGCTTCTGTCCATGTCTTCACGTTCGAGAAGCTTATTACCTGCCAGATCAGTGA

Coding sequence (CDS)

ATGTCTGCCAACTATTACTACATTTGCTCAGACGAGGGCACCTCCACCGGAGTGGACTTCATTTTACGAGCGTCAACTTGGGTCTTCGATTTACTCGAACGAGAACCATTGCCTTCAGCCATTTTAGAGCAAAAGACTTACTATGCCGGTTTCCCACAGACGGCGCCAAATGTTGATGTTGTTTTCCGATCGAACTTGTACGTCGGTGACGAGCTGACATGGACAGAGCTCCAAGGTGCTGGAAAGCATGCTGGGGGAGACAGGCCAATTAGTTGGTTAGGATGTGCGGTTATTCCTGCCGGGCACCCATGTCGGCAGTCGAGCCTGAGGTCGGAGTCTCAGGTCGGTTCCGAGCATATTCTCGGCTTAGACGATCGGACTCTTCTCTTGCAATCGGAACCCCCAGCGGCCACCGGAGTTGAAGCGGCGGCGTCGTACCAGCAATACACGGCTCCGAATCCGGTGTACGGATTGCCGATTGTGGAAATGGGTAGCATAAGGACAAGGGAGAGATCTCTGTTCACCGATTTGGGCGCTAGGTTGATTAGGTGCTTCTGTCCATGTCTTCACGTTCGAGAAGCTTATTACCTGCCAGATCAGTGA

Protein sequence

MSANYYYICSDEGTSTGVDFILRASTWVFDLLEREPLPSAILEQKTYYAGFPQTAPNVDVVFRSNLYVGDELTWTELQGAGKHAGGDRPISWLGCAVIPAGHPCRQSSLRSESQVGSEHILGLDDRTLLLQSEPPAATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRERSLFTDLGARLIRCFCPCLHVREAYYLPDQ

Homology

[Close]

BLAST of Moc09g14470 vs. NCBI nr
Match: XP_022155153.1 (uncharacterized protein LOC111022295 [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 7.4e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 123 LDDRTLLLQSEPPAATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRERSLFTDLGARLI 182
           LDDRTLLLQSEPPAATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRERSLFTDLGARLI
Sbjct: 54  LDDRTLLLQSEPPAATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRERSLFTDLGARLI 113

Query: 183 RCFCPCLHVREAYYLPDQ 201
           RCFCPCLHVREAYYLPDQ
Sbjct: 114 RCFCPCLHVREAYYLPDQ 131

[Close]

BLAST of Moc09g14470 vs. NCBI nr
Match: XP_002527837.1 (uncharacterized protein LOC8262569 [Ricinus communis] >EEF34540.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-08
Identity = 35/91 (38.46%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 106 QSSLRSESQVGSEHILGLDDRTLLLQSEPPAATGVEAAASYQQYTAPNPVYGLPIVEMGS 165
           +   +S+ Q  S+ I+   D   +     P     +   +YQQY  PNPVYG+P+VE   
Sbjct: 74  EEGYQSQFQFPSQEIVVETDTNAIY----PTLPNTDTPLTYQQYAVPNPVYGVPVVEQTP 133

Query: 166 IRTRERSL---FTDLGARLIRCFCPCLHVRE 194
            R R       F   GA LIRCFCPC H+RE
Sbjct: 134 RRERSAGFFGCFVKFGANLIRCFCPCFHIRE 160

[Close]

BLAST of Moc09g14470 vs. NCBI nr
Match: XP_021298072.1 (uncharacterized protein LOC110427036 [Herrania umbratica])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-07
Identity = 30/54 (55.56%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 143 AASYQQYTAPNPVYGLPIVEMGSIRTRERSLF---TDLGARLIRCFCPCLHVRE 194
           A SYQQY  PNPVYGLP+V+    R R    F    D G  LIRCFCPC  +RE
Sbjct: 106 APSYQQYMDPNPVYGLPVVQQAGRRERSAGFFGCMIDFGVHLIRCFCPCFRIRE 159

[Close]

BLAST of Moc09g14470 vs. NCBI nr
Match: XP_022714469.1 (uncharacterized protein LOC111274079 [Durio zibethinus])

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-07
Identity = 32/65 (49.23%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 134 PPAATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRERSLFT---DLGARLIRCFCPCLH 193
           P  A    AA SYQQY  PNPVYGLP+V+    R R    F+   + G  LIRCFCPC  
Sbjct: 100 PAPAPAPAAAPSYQQYLVPNPVYGLPVVQTAR-RERSAGFFSCVINFGVNLIRCFCPCFR 159

Query: 194 VREAY 196
           +RE +
Sbjct: 160 IREEF 163

[Close]

BLAST of Moc09g14470 vs. NCBI nr
Match: XP_017641868.1 (PREDICTED: uncharacterized protein LOC108483150 [Gossypium arboreum])

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-07
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 136 AATGVEAAA--SYQQYTAPNPVYGLPIVEMGSIRTRERSLF---TDLGARLIRCFCPCLH 194
           +AT + AAA  SYQQY   NPVYG P+V+    R R    F    D+  RLIRCFCPC+H
Sbjct: 98  SATMIPAAAGPSYQQYMVSNPVYGPPVVQQTGRRERSGGYFGCIIDISLRLIRCFCPCVH 157

[Close]

BLAST of Moc09g14470 vs. ExPASy TrEMBL
Match: A0A6J1DM77 (uncharacterized protein LOC111022295 OS=Momordica charantia OX=3673 GN=LOC111022295 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.6e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 123 LDDRTLLLQSEPPAATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRERSLFTDLGARLI 182
           LDDRTLLLQSEPPAATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRERSLFTDLGARLI
Sbjct: 54  LDDRTLLLQSEPPAATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRERSLFTDLGARLI 113

Query: 183 RCFCPCLHVREAYYLPDQ 201
           RCFCPCLHVREAYYLPDQ
Sbjct: 114 RCFCPCLHVREAYYLPDQ 131

[Close]

BLAST of Moc09g14470 vs. ExPASy TrEMBL
Match: B9SPB8 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0496640 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.0e-09
Identity = 35/91 (38.46%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 106 QSSLRSESQVGSEHILGLDDRTLLLQSEPPAATGVEAAASYQQYTAPNPVYGLPIVEMGS 165
           +   +S+ Q  S+ I+   D   +     P     +   +YQQY  PNPVYG+P+VE   
Sbjct: 74  EEGYQSQFQFPSQEIVVETDTNAIY----PTLPNTDTPLTYQQYAVPNPVYGVPVVEQTP 133

Query: 166 IRTRERSL---FTDLGARLIRCFCPCLHVRE 194
            R R       F   GA LIRCFCPC H+RE
Sbjct: 134 RRERSAGFFGCFVKFGANLIRCFCPCFHIRE 160

[Close]

BLAST of Moc09g14470 vs. ExPASy TrEMBL
Match: A0A6J1BEW6 (uncharacterized protein LOC110427036 OS=Herrania umbratica OX=108875 GN=LOC110427036 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.8e-08
Identity = 30/54 (55.56%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 143 AASYQQYTAPNPVYGLPIVEMGSIRTRERSLF---TDLGARLIRCFCPCLHVRE 194
           A SYQQY  PNPVYGLP+V+    R R    F    D G  LIRCFCPC  +RE
Sbjct: 106 APSYQQYMDPNPVYGLPVVQQAGRRERSAGFFGCMIDFGVHLIRCFCPCFRIRE 159

[Close]

BLAST of Moc09g14470 vs. ExPASy TrEMBL
Match: A0A6P5WF30 (uncharacterized protein LOC111274079 OS=Durio zibethinus OX=66656 GN=LOC111274079 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-07
Identity = 32/65 (49.23%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 134 PPAATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRERSLFT---DLGARLIRCFCPCLH 193
           P  A    AA SYQQY  PNPVYGLP+V+    R R    F+   + G  LIRCFCPC  
Sbjct: 100 PAPAPAPAAAPSYQQYLVPNPVYGLPVVQTAR-RERSAGFFSCVINFGVNLIRCFCPCFR 159

Query: 194 VREAY 196
           +RE +
Sbjct: 160 IREEF 163

[Close]

BLAST of Moc09g14470 vs. ExPASy TrEMBL
Match: A0A6P4PX64 (uncharacterized protein LOC108483150 OS=Gossypium arboreum OX=29729 GN=LOC108483150 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 136 AATGVEAAA--SYQQYTAPNPVYGLPIVEMGSIRTRERSLF---TDLGARLIRCFCPCLH 194
           +AT + AAA  SYQQY   NPVYG P+V+    R R    F    D+  RLIRCFCPC+H
Sbjct: 98  SATMIPAAAGPSYQQYMVSNPVYGPPVVQQTGRRERSGGYFGCIIDISLRLIRCFCPCVH 157

The following BLAST results are available for this feature:

BLAST of Moc09g14470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155153.1	7.4e-37	100.00	uncharacterized protein LOC111022295 [Momordica charantia]	[more]
XP_002527837.1	1.4e-08	38.46	uncharacterized protein LOC8262569 [Ricinus communis] >EEF34540.1 conserved hypo...	[more]
XP_021298072.1	1.6e-07	55.56	uncharacterized protein LOC110427036 [Herrania umbratica]	[more]
XP_022714469.1	2.1e-07	49.23	uncharacterized protein LOC111274079 [Durio zibethinus]	[more]
XP_017641868.1	2.7e-07	53.97	PREDICTED: uncharacterized protein LOC108483150 [Gossypium arboreum]	[more]

BLAST of Moc09g14470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g14470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DM77	3.6e-37	100.00	uncharacterized protein LOC111022295 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
B9SPB8	7.0e-09	38.46	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0496640 PE=4 SV=1	[more]
A0A6J1BEW6	7.8e-08	55.56	uncharacterized protein LOC110427036 OS=Herrania umbratica OX=108875 GN=LOC11042...	[more]
A0A6P5WF30	1.0e-07	49.23	uncharacterized protein LOC111274079 OS=Durio zibethinus OX=66656 GN=LOC11127407...	[more]
A0A6P4PX64	1.3e-07	53.97	uncharacterized protein LOC108483150 OS=Gossypium arboreum OX=29729 GN=LOC108483...	[more]

BLAST of Moc09g14470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g14470.1	Moc09g14470.1	mRNA