Moc09g14120 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g14120
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Location	chr9: 12013984 .. 12015802 (-)
RNA-Seq Expression	Moc09g14120
Synteny	Moc09g14120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCGATTGTAGACTTGCTCGCCGACGAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTCGCGTGCCGGAACTGCTTTATCAGCATCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAGCGCCTTGTTCGCCATCGCCAAACTCTAATCTCTGATTTCCTTTTCCTTTCCCAAGATCCAAATGCTCGCTTCTTCTCTCCCTCGCTCTTCACTTTTCACTTCCTCGGCCACTACCCCAAATTACTTTATTACCCCTCCCTCGTCCTTTCTAAGAAACCTTTCTTTTTTCCTTTTACTTTTACTAGTTTTTATAATTTATATATTTACTATATATTTTTATTTTTCTCCGTCAAGATCATTGTCGAGGCTTCTATCCTAGGGGTATTAAACTCAGTGACTCAAACAACCCAACCAATCTTGGTTGGGTTGAAAAAGATTTCGATTTGGGTTAGGGTTGAAAAATATTTCGGTTTGGGTTGGATTATTTTTTTCTAGAACCAAAAATTCAATTTGATTTTTTATTTATGAAAATTTTGAAAGGCAATTAGAGGAGTGACTATTTAAATAGAAAAATGGTTTAAAGAATCCAATATAAATGGCTAACACAGAGTTATAGTTCAATGTTGGAATTTAATGTGGACAAATATATCATCCTATCAAAATAAGTAAAATTATCCTACCGTTACCCCTTAAATTTTATGGTAAAAATACTCTTGAAATAAATCTTTGCTACACTTTAATTTTAGAAATAAAATAGTGAGTCAAAATTTTAGAAATAAAATATGTTAAATGAATAGTTTGAAATAAAAAAGAATTAAGATGCAGAAGAATATGAAAAATGACCTTACAAAACATAAAATCAATGCATAAAAGTTGAAAATGAGTAAAAAAAAGATTGAAAAATCAAATATTATTTTTAAAATTATGGATGTGTAGCTACATTAGGAGACACGATAATTAATACCGTGACAATTAAAATTATGGAGGTGTAGCTTACGAATCGACTTCTTCTTCCCCAATTTCATTTTCTTGTAGCTTTGCCATCAATCTCGTGCGTTGTGTACATCCCTGCAGACATATATAGTGTAAATACGCGTATAGATAGAATAAATACAGCATAAGTAGAGAGACACACAATACTTAGATTTTTCTCGATCAATCTGGTTGCAAAAGATGGGATGAAAGTGTATGAATGTTTAGGTGACCCCCTTTTAAAGGCTTCTCCATTCCTCTCCGAACCTTGTCATAACTAATATTTATGTCATGCTTCTTCCGAACGTAATCAATTATGTCACGTGGACTACAATGTCTCCCGTTGTTCATGCTTAAACAGTATCTTCGCACATTCACCTATCATTGTTATTGTCGCTTGCCTATGGTCATTACGAATGACATCAATCGAACAAGTGTGTTTTGATAAACAATCCATAATCTACTGTCCCTATATTGAGAGGAGTGTATATACCACTTGCATGTTTCTTCGATGTATATTACAATCAGCTGTTTCTGGTTGAGTTTGACGGTTTTAAACTGAAAATCTCTTTTAATGCAATCGCATAAAGAGTCTTCTTCAATTTTTCCTTATTTTGAAAAACATAATTCTTCCAACGGGAAATTAGATGGAGCACAGTCAAAATTAATAGAGTCTATGAATTTCTTCCCCTGAGGTAAACTACGTTATGAGTGACCTTCGTACTTCCGCTGCCCCCATAGATGGTGTTATATACAGGGTCAGTATCAACAACTAGCAGCAGTCGCTACCTATGACATCAAACAAAAGTGA

mRNA sequence

ATGGATGCGATTGTAGACTTGCTCGCCGACGAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTCGCGTGCCGGAACTGCTTTATCAGCATCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAGCGCCTTGTTCGCCATCGCCAAACTCTAATCTCTGATTTCCTTTTCCTTTCCCAAGATCCAAATGCTCGCTTCTTCTCTCCCTCGCTCTTCACTTTTCACTTCCTCGGCCACTACCCCAAATTACTTTATTACCCCTCCCTCGTCCTTTCTAAGAAACCTTTCTTTTTTCCTTTTACTTTTACTAGTTTTTATAATTTATATATTTACTATATATTTTTATTTTTCTCCGTCAAGATCATTGTCGAGGCTTCTATCCTAGGGGGTCAGTATCAACAACTAGCAGCAGTCGCTACCTATGACATCAAACAAAAGTGA

Coding sequence (CDS)

ATGGATGCGATTGTAGACTTGCTCGCCGACGAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTCGCGTGCCGGAACTGCTTTATCAGCATCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAGCGCCTTGTTCGCCATCGCCAAACTCTAATCTCTGATTTCCTTTTCCTTTCCCAAGATCCAAATGCTCGCTTCTTCTCTCCCTCGCTCTTCACTTTTCACTTCCTCGGCCACTACCCCAAATTACTTTATTACCCCTCCCTCGTCCTTTCTAAGAAACCTTTCTTTTTTCCTTTTACTTTTACTAGTTTTTATAATTTATATATTTACTATATATTTTTATTTTTCTCCGTCAAGATCATTGTCGAGGCTTCTATCCTAGGGGGTCAGTATCAACAACTAGCAGCAGTCGCTACCTATGACATCAAACAAAAGTGA

Protein sequence

MDAIVDLLADEVDAESDEGDAEARSRVPELLYQHRMLPPLVSPPEELSRRSQRLVRHRQTLISDFLFLSQDPNARFFSPSLFTFHFLGHYPKLLYYPSLVLSKKPFFFPFTFTSFYNLYIYYIFLFFSVKIIVEASILGGQYQQLAAVATYDIKQK

Homology

[Close]

BLAST of Moc09g14120 vs. NCBI nr
Match: KAG6597022.1 (hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-14
Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MDAIVDLLADEVDAESDEGDAEARSRVPELLYQHRMLPPLVSPPEELSRRSQRLVRHRQT 60
           MD ++ LLA++VDAES+E DAEARS + EL+ +HRMLPPLV PPEELS RSQRL+RH +T
Sbjct: 18  MDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCPPEELSSRSQRLIRHCKT 77

Query: 61  -LIS----DFLFLSQDPNARFFSPSLFTFHFLGHYPKLLYYPSLV 101
            LIS     F       +  F   SLF+     +Y KLLYYP ++
Sbjct: 78  ALISLSLRSFTSSWMGADRHFLLSSLFSLP--SYYFKLLYYPLIL 120

[Close]

BLAST of Moc09g14120 vs. NCBI nr
Match: KAA0054191.1 (hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK15069.1 hypothetical protein E5676_scaffold45G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-12
Identity = 40/57 (70.18%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MDAIVDLLADEVDAESDEGDAEARSRVPELLYQHRMLPPLVSPPEELSRRSQRLVRH 58
          +D +V+LLAD+VDAES+EGDAEAR  + EL+ +H MLPP +SPPEELSRRSQRL+RH
Sbjct: 18 IDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISPPEELSRRSQRLIRH 74

[Close]

BLAST of Moc09g14120 vs. NCBI nr
Match: KAB1208638.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [Morella rubra])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-09
Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 1  MDAIVDLLADEVDAESDEGDAEARSRVPELLYQHRMLPPLVSPPEELSRRSQRLVRHRQT 60
          M+++VDLLADEVD+E ++GDAEARS V +L+ QHR+LPPLV PPEELS  SQ L+ H  +
Sbjct: 1  MESVVDLLADEVDSEGNKGDAEARSGVAKLICQHRVLPPLVPPPEELSCGSQCLICHYLS 60

Query: 61 LISDFLFLSQDPNARFFSPSLFTFHFLGHYPKLLYYP 98
               L L    N       L     LGH   +L  P
Sbjct: 61 HSLPLLLLLLLSNGNDEKHLLGKRRELGHQGSILIAP 97

[Close]

BLAST of Moc09g14120 vs. NCBI nr
Match: KAB2627647.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-08
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 2  DAIVDLLADEVDAESDEGDAEARSRVPELLYQHRMLPPLVSPPEELSRRSQRLVRHR--- 61
          +A+VDLLADEVDAE +E DA+A   V EL+ +HRMLPPLV PPEEL  R Q   RH+   
Sbjct: 18 EAVVDLLADEVDAECNESDAKAGRGVAELIGEHRMLPPLVPPPEELPCRKQFSFRHKAKA 77

Query: 62 -QTLISDFLFLSQDPNA 75
            T I+ F   S   NA
Sbjct: 78 PPTRIATFTCFSARVNA 94

[Close]

BLAST of Moc09g14120 vs. NCBI nr
Match: RAL52756.1 (hypothetical protein DM860_007524 [Cuscuta australis])

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-08
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 1  MDAIVDLLADEVDAESDEGDAEARSRVPELLYQHRMLPPLVSPPEELSRRSQRLVRH 58
          +D +V   A EVDAE ++GDAE R+ V EL+ QHR+LPPLV PPEELSRRS+RL  +
Sbjct: 5  IDLVVGGFAGEVDAEGNKGDAEPRNGVAELIRQHRVLPPLVPPPEELSRRSKRLCHY 61

[Close]

BLAST of Moc09g14120 vs. ExPASy TrEMBL
Match: A0A5A7UKX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001210 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 40/57 (70.18%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MDAIVDLLADEVDAESDEGDAEARSRVPELLYQHRMLPPLVSPPEELSRRSQRLVRH 58
          +D +V+LLAD+VDAES+EGDAEAR  + EL+ +H MLPP +SPPEELSRRSQRL+RH
Sbjct: 18 IDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISPPEELSRRSQRLIRH 74

[Close]

BLAST of Moc09g14120 vs. ExPASy TrEMBL
Match: A0A0A0KP64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MDAIVDLLADEVDAESDEGDAEARSRVPELLYQHRMLPPLVSPPEELSRRSQRLVRH 58
          +D +V+LLAD+VDAES+EGDAEARS V EL+ +H MLPP +SPPEELSRRSQRL+ H
Sbjct: 18 IDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISPPEELSRRSQRLIGH 74

[Close]

BLAST of Moc09g14120 vs. ExPASy TrEMBL
Match: A0A6A1V9T8 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Morella rubra OX=262757 GN=CJ030_MR7G029153 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 1  MDAIVDLLADEVDAESDEGDAEARSRVPELLYQHRMLPPLVSPPEELSRRSQRLVRHRQT 60
          M+++VDLLADEVD+E ++GDAEARS V +L+ QHR+LPPLV PPEELS  SQ L+ H  +
Sbjct: 1  MESVVDLLADEVDSEGNKGDAEARSGVAKLICQHRVLPPLVPPPEELSCGSQCLICHYLS 60

Query: 61 LISDFLFLSQDPNARFFSPSLFTFHFLGHYPKLLYYP 98
               L L    N       L     LGH   +L  P
Sbjct: 61 HSLPLLLLLLLSNGNDEKHLLGKRRELGHQGSILIAP 97

[Close]

BLAST of Moc09g14120 vs. ExPASy TrEMBL
Match: A0A5N5HLF1 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_042700 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.1e-09
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 2  DAIVDLLADEVDAESDEGDAEARSRVPELLYQHRMLPPLVSPPEELSRRSQRLVRHR--- 61
          +A+VDLLADEVDAE +E DA+A   V EL+ +HRMLPPLV PPEEL  R Q   RH+   
Sbjct: 18 EAVVDLLADEVDAECNESDAKAGRGVAELIGEHRMLPPLVPPPEELPCRKQFSFRHKAKA 77

Query: 62 -QTLISDFLFLSQDPNA 75
            T I+ F   S   NA
Sbjct: 78 PPTRIATFTCFSARVNA 94

[Close]

BLAST of Moc09g14120 vs. ExPASy TrEMBL
Match: A0A328E5M9 (Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_007524 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 1  MDAIVDLLADEVDAESDEGDAEARSRVPELLYQHRMLPPLVSPPEELSRRSQRLVRH 58
          +D +V   A EVDAE ++GDAE R+ V EL+ QHR+LPPLV PPEELSRRS+RL  +
Sbjct: 5  IDLVVGGFAGEVDAEGNKGDAEPRNGVAELIRQHRVLPPLVPPPEELSRRSKRLCHY 61

The following BLAST results are available for this feature:

BLAST of Moc09g14120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597022.1	4.0e-14	53.33	hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0054191.1	2.2e-12	70.18	hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK150...	[more]
KAB1208638.1	1.7e-09	48.45	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [Morella...	[more]
KAB2627647.1	1.5e-08	54.55	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Pyrus ussuriensis x Py...	[more]
RAL52756.1	4.3e-08	61.40	hypothetical protein DM860_007524 [Cuscuta australis]	[more]

BLAST of Moc09g14120 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g14120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKX3	1.1e-12	70.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KP64	1.1e-12	71.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1	[more]
A0A6A1V9T8	8.4e-10	48.45	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Morel...	[more]
A0A5N5HLF1	7.1e-09	54.55	4-diphosphocytidyl-2C-methyl-D-erythritol synthase OS=Pyrus ussuriensis x Pyrus ...	[more]
A0A328E5M9	2.1e-08	61.40	Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_007524 PE=4 SV=1	[more]

BLAST of Moc09g14120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g14120.1	Moc09g14120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0050518	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity