Moc09g13930 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g13930
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr9: 11895374 .. 11896034 (+)
RNA-Seq Expression	Moc09g13930
Synteny	Moc09g13930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTGCCAAGCATTCCAAATCGTGTTGGAAGGCGCGGCGAGGTTGTGGTATCGGCAGCTGAAGCCGAAGTCAATCGATAGTTACCAACAGCTTCGCAGAATGTTTATTAATAAGTTCGCCGCTCGACAATTATTGAAGCTGCCCCCTTCTCACCTTGGAACTACAAAGCAACAGGACAATGAGTCACTCACTGAATACATAGCTCGGTTTATGGACGAGCACCTGAAGGTTGTTATCTGTACCGACGACATTGCTATGATGTATTTTACGACGAGATTAAACGACCGAAAAGTAACAATCAAGTTCAGAAGCCATTCTCTAGCTTTCTTGAATGAAATGCTCGCTCAAGCCCGACAGTATATTGACGGGCTAGAACTCTGGAAGGCTAATGGAGCTAGTCGTAGCAGTTGCAATAGGAATAAAGATTTGAAGTCCTCCTCATCCAAGAGACAACGGGAAGATGACCGAAACTCATCCCACCAATCAAGTGACAACAAGACTCGTGATCGACGCAATGACCAGCGTTTTAGTTCTTCAGATAGGTATGGGCCAAAATTCCACATATTTATTACTTGTTGAAATTTGACATTGCTATCAACATCGTCTACTCTTTGCGAACTACAGTCAAATAGGGGCCAAAGAAGAGTGCGAAGTATGA

mRNA sequence

ATGAAGTGCCAAGCATTCCAAATCGTGTTGGAAGGCGCGGCGAGGTTGTGGTATCGGCAGCTGAAGCCGAAGTCAATCGATAGTTACCAACAGCTTCGCAGAATGTTTATTAATAAGTTCGCCGCTCGACAATTATTGAAGCTGCCCCCTTCTCACCTTGGAACTACAAAGCAACAGGACAATGAGTCACTCACTGAATACATAGCTCGGTTTATGGACGAGCACCTGAAGGTTGTTATCTGTACCGACGACATTGCTATGATGTATTTTACGACGAGATTAAACGACCGAAAAGTAACAATCAAGTTCAGAAGCCATTCTCTAGCTTTCTTGAATGAAATGCTCGCTCAAGCCCGACAGTATATTGACGGGCTAGAACTCTGGAAGGCTAATGGAGCTAGTCGTAGCAGTTGCAATAGGAATAAAGATTTGAAGTCCTCCTCATCCAAGAGACAACGGGAAGATGACCGAAACTCATCCCACCAATCAAGTGACAACAAGACTCGTGATCGACGCAATGACCAGCGTTTTAGTTCTTCAGATAGTCAAATAGGGGCCAAAGAAGAGTGCGAAGTATGA

Coding sequence (CDS)

ATGAAGTGCCAAGCATTCCAAATCGTGTTGGAAGGCGCGGCGAGGTTGTGGTATCGGCAGCTGAAGCCGAAGTCAATCGATAGTTACCAACAGCTTCGCAGAATGTTTATTAATAAGTTCGCCGCTCGACAATTATTGAAGCTGCCCCCTTCTCACCTTGGAACTACAAAGCAACAGGACAATGAGTCACTCACTGAATACATAGCTCGGTTTATGGACGAGCACCTGAAGGTTGTTATCTGTACCGACGACATTGCTATGATGTATTTTACGACGAGATTAAACGACCGAAAAGTAACAATCAAGTTCAGAAGCCATTCTCTAGCTTTCTTGAATGAAATGCTCGCTCAAGCCCGACAGTATATTGACGGGCTAGAACTCTGGAAGGCTAATGGAGCTAGTCGTAGCAGTTGCAATAGGAATAAAGATTTGAAGTCCTCCTCATCCAAGAGACAACGGGAAGATGACCGAAACTCATCCCACCAATCAAGTGACAACAAGACTCGTGATCGACGCAATGACCAGCGTTTTAGTTCTTCAGATAGTCAAATAGGGGCCAAAGAAGAGTGCGAAGTATGA

Protein sequence

MKCQAFQIVLEGAARLWYRQLKPKSIDSYQQLRRMFINKFAARQLLKLPPSHLGTTKQQDNESLTEYIARFMDEHLKVVICTDDIAMMYFTTRLNDRKVTIKFRSHSLAFLNEMLAQARQYIDGLELWKANGASRSSCNRNKDLKSSSSKRQREDDRNSSHQSSDNKTRDRRNDQRFSSSDSQIGAKEECEV

Homology

[Close]

BLAST of Moc09g13930 vs. NCBI nr
Match: XP_022149029.1 (uncharacterized protein LOC111017548 [Momordica charantia])

HSP 1 Score: 231.5 bits (589), Expect = 6.2e-57
Identity = 123/179 (68.72%), Postives = 151/179 (84.36%), Query Frame = 0


Query: 1   MKCQAFQIVLEGAARLWYRQLKPKSIDSYQQLRRMFINKFAARQLLKLPPSHLGTTKQQD 60
           +KC+AFQI LEG+ RLWY+QLKP+SIDSYQQLRR+FIN+F+ARQLLKLPPSHL T KQ+D
Sbjct: 10  IKCRAFQIALEGSVRLWYQQLKPRSIDSYQQLRRLFINQFSARQLLKLPPSHLETVKQRD 69

Query: 61  NESLTEYIARFMDEHLKVVICTDDIAMMYFTTRLNDRKVTIKFRSHSLAFLNEMLAQARQ 120
           NESLTEYIAR MDEH+KVV CTDDIAMMYFTT LNDR +TI+F S   A LN+MLA+ARQ
Sbjct: 70  NESLTEYIARLMDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFGSRPPASLNKMLARARQ 129

Query: 121 YIDGLELWKANGASRSSCNRNKDLKSSSSKRQREDDRNSSHQSSDNKTRDRRNDQRFSS 180
           YIDGLELWKA GA RSS  +++D +SS  K++  DD++SS Q+ D+++R  + D+R SS
Sbjct: 130 YIDGLELWKAKGARRSSRGKDRDQRSSPPKKRHSDDQSSSRQAVDDRSRG-QCDERGSS 187

[Close]

BLAST of Moc09g13930 vs. NCBI nr
Match: XP_022152851.1 (uncharacterized protein LOC111020475 [Momordica charantia])

HSP 1 Score: 210.7 bits (535), Expect = 1.1e-50
Identity = 102/133 (76.69%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MKCQAFQIVLEGAARLWYRQLKPKSIDSYQQLRRMFINKFAARQLLKLPPSHLGTTKQQD 60
           MKC AFQI LEG+ RLWYRQLK +SIDSYQQLRR+FIN+F+ RQ LKLP SHLGT KQ+D
Sbjct: 30  MKCGAFQITLEGSTRLWYRQLKLRSIDSYQQLRRLFINQFSTRQFLKLPLSHLGTVKQRD 89

Query: 61  NESLTEYIARFMDEHLKVVICTDDIAMMYFTTRLNDRKVTIKFRSHSLAFLNEMLAQARQ 120
           NES T YIARFMDEH+KVV CTDDIAMMYFTT LNDR +TI+F S+  A+LNEM A+ARQ
Sbjct: 90  NESFTVYIARFMDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFGSYQPAYLNEMFARARQ 149

Query: 121 YIDGLELWKANGA 134
           YIDGLELW A+GA
Sbjct: 150 YIDGLELWNADGA 162

[Close]

BLAST of Moc09g13930 vs. NCBI nr
Match: XP_022156001.1 (uncharacterized protein LOC111022976 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-25
Identity = 75/148 (50.68%), Postives = 101/148 (68.24%), Query Frame = 0


Query: 35  MFINKFAARQLLKLPPSHLGTTKQQDNESLTEYIARFMDEHLKVVICTDDIAMMYFTTRL 94
           MFIN+ +A QLLKLP SHLGT KQ+D ESLT+YI RFMDEH+KV+ CTD++A++YFTT L
Sbjct: 1   MFINQLSALQLLKLPTSHLGTIKQRDCESLTDYITRFMDEHVKVLNCTDEMAIIYFTTGL 60

Query: 95  NDRKVTIKFRSHSLAFLNEMLAQARQYIDGLELWKANGASRSSCNRNKDLKSSSSKRQRE 154
             R + +K  S      NE+L  A +YIDGLELW+AN   R S   +K      S+++R 
Sbjct: 61  KGRNLVMKLSSKPATLFNELLTLAGRYIDGLELWQANDGKRYSSRDDK------SQKKRG 120

Query: 155 DDRNSSHQSSDNKTRDRRNDQRFSSSDS 183
           DDR SS +  + KT ++R+D R  S ++
Sbjct: 121 DDRTSS-RLPEEKTSEQRSDARTESKNT 141

[Close]

BLAST of Moc09g13930 vs. NCBI nr
Match: XP_022158844.1 (uncharacterized protein LOC111025310 [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 2.8e-25
Identity = 72/109 (66.06%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 72  MDEHLKVVICTDDIAMMYFTTRLNDRKVTIKFRSHSLAFLNEMLAQARQYIDGLELWKAN 131
           MDEH+KVV CTDDIAMMYFTT LNDR +TI+FRS   A LNEM A+ARQYIDGLELWKAN
Sbjct: 1   MDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFRSRPPASLNEMFARARQYIDGLELWKAN 60

Query: 132 GASRSSCNRNKDLKSSSSKRQREDDRNSSHQSSDNKTRDRRNDQRFSSS 181
           GA RSS  R++D KS  SK++ +DDR+SS ++ D+K+R RR D+R +S+
Sbjct: 61  GARRSSRGRDRDHKSPPSKKRCDDDRSSSRRADDDKSRSRR-DERVTSN 108

[Close]

BLAST of Moc09g13930 vs. NCBI nr
Match: XP_022159250.1 (uncharacterized protein LOC111025663 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 3.1e-24
Identity = 68/163 (41.72%), Postives = 100/163 (61.35%), Query Frame = 0


Query: 1   MKCQAFQIVLEGAARLWYRQLKPKSIDSYQQLRRMFINKFAARQLLKLPPSHLGTTKQQD 60
           +KC+AFQI L  +ARLWYR+L  +SI +Y QLR+ FI++F++R   +   +HL T +Q++
Sbjct: 80  IKCRAFQIALTDSARLWYRRLPARSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKE 139

Query: 61  NESLTEYIARFMDEHLKVVICTDDIAMMYFTTRLNDRKVTIKFRSHSLAFLNEMLAQARQ 120
            E+L EY+ RF++E LKV  C+DD AM YF T L D  +T+K    + A   E+L +A++
Sbjct: 140 GETLREYVTRFLEEQLKVAHCSDDSAMCYFLTGLADENLTVKLGEEAPATFAEVLQKAKK 199

Query: 121 YIDGLELW--------------KANGASRSSCNRNKDLKSSSS 150
            IDG EL               K N   R + +++KD  SSSS
Sbjct: 200 VIDGQELLQTKTDRPEKQIDQKKLNQEKRKADSKSKDKGSSSS 242

[Close]

BLAST of Moc09g13930 vs. ExPASy TrEMBL
Match: A0A6J1D5T3 (uncharacterized protein LOC111017548 OS=Momordica charantia OX=3673 GN=LOC111017548 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.0e-57
Identity = 123/179 (68.72%), Postives = 151/179 (84.36%), Query Frame = 0


Query: 1   MKCQAFQIVLEGAARLWYRQLKPKSIDSYQQLRRMFINKFAARQLLKLPPSHLGTTKQQD 60
           +KC+AFQI LEG+ RLWY+QLKP+SIDSYQQLRR+FIN+F+ARQLLKLPPSHL T KQ+D
Sbjct: 10  IKCRAFQIALEGSVRLWYQQLKPRSIDSYQQLRRLFINQFSARQLLKLPPSHLETVKQRD 69

Query: 61  NESLTEYIARFMDEHLKVVICTDDIAMMYFTTRLNDRKVTIKFRSHSLAFLNEMLAQARQ 120
           NESLTEYIAR MDEH+KVV CTDDIAMMYFTT LNDR +TI+F S   A LN+MLA+ARQ
Sbjct: 70  NESLTEYIARLMDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFGSRPPASLNKMLARARQ 129

Query: 121 YIDGLELWKANGASRSSCNRNKDLKSSSSKRQREDDRNSSHQSSDNKTRDRRNDQRFSS 180
           YIDGLELWKA GA RSS  +++D +SS  K++  DD++SS Q+ D+++R  + D+R SS
Sbjct: 130 YIDGLELWKAKGARRSSRGKDRDQRSSPPKKRHSDDQSSSRQAVDDRSRG-QCDERGSS 187

[Close]

BLAST of Moc09g13930 vs. ExPASy TrEMBL
Match: A0A6J1DIZ8 (uncharacterized protein LOC111020475 OS=Momordica charantia OX=3673 GN=LOC111020475 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 5.4e-51
Identity = 102/133 (76.69%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MKCQAFQIVLEGAARLWYRQLKPKSIDSYQQLRRMFINKFAARQLLKLPPSHLGTTKQQD 60
           MKC AFQI LEG+ RLWYRQLK +SIDSYQQLRR+FIN+F+ RQ LKLP SHLGT KQ+D
Sbjct: 30  MKCGAFQITLEGSTRLWYRQLKLRSIDSYQQLRRLFINQFSTRQFLKLPLSHLGTVKQRD 89

Query: 61  NESLTEYIARFMDEHLKVVICTDDIAMMYFTTRLNDRKVTIKFRSHSLAFLNEMLAQARQ 120
           NES T YIARFMDEH+KVV CTDDIAMMYFTT LNDR +TI+F S+  A+LNEM A+ARQ
Sbjct: 90  NESFTVYIARFMDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFGSYQPAYLNEMFARARQ 149

Query: 121 YIDGLELWKANGA 134
           YIDGLELW A+GA
Sbjct: 150 YIDGLELWNADGA 162

[Close]

BLAST of Moc09g13930 vs. ExPASy TrEMBL
Match: A0A6J1DTI2 (uncharacterized protein LOC111022976 OS=Momordica charantia OX=3673 GN=LOC111022976 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.9e-26
Identity = 75/148 (50.68%), Postives = 101/148 (68.24%), Query Frame = 0


Query: 35  MFINKFAARQLLKLPPSHLGTTKQQDNESLTEYIARFMDEHLKVVICTDDIAMMYFTTRL 94
           MFIN+ +A QLLKLP SHLGT KQ+D ESLT+YI RFMDEH+KV+ CTD++A++YFTT L
Sbjct: 1   MFINQLSALQLLKLPTSHLGTIKQRDCESLTDYITRFMDEHVKVLNCTDEMAIIYFTTGL 60

Query: 95  NDRKVTIKFRSHSLAFLNEMLAQARQYIDGLELWKANGASRSSCNRNKDLKSSSSKRQRE 154
             R + +K  S      NE+L  A +YIDGLELW+AN   R S   +K      S+++R 
Sbjct: 61  KGRNLVMKLSSKPATLFNELLTLAGRYIDGLELWQANDGKRYSSRDDK------SQKKRG 120

Query: 155 DDRNSSHQSSDNKTRDRRNDQRFSSSDS 183
           DDR SS +  + KT ++R+D R  S ++
Sbjct: 121 DDRTSS-RLPEEKTSEQRSDARTESKNT 141

[Close]

BLAST of Moc09g13930 vs. ExPASy TrEMBL
Match: A0A6J1E0L8 (uncharacterized protein LOC111025310 OS=Momordica charantia OX=3673 GN=LOC111025310 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-25
Identity = 72/109 (66.06%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 72  MDEHLKVVICTDDIAMMYFTTRLNDRKVTIKFRSHSLAFLNEMLAQARQYIDGLELWKAN 131
           MDEH+KVV CTDDIAMMYFTT LNDR +TI+FRS   A LNEM A+ARQYIDGLELWKAN
Sbjct: 1   MDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFRSRPPASLNEMFARARQYIDGLELWKAN 60

Query: 132 GASRSSCNRNKDLKSSSSKRQREDDRNSSHQSSDNKTRDRRNDQRFSSS 181
           GA RSS  R++D KS  SK++ +DDR+SS ++ D+K+R RR D+R +S+
Sbjct: 61  GARRSSRGRDRDHKSPPSKKRCDDDRSSSRRADDDKSRSRR-DERVTSN 108

[Close]

BLAST of Moc09g13930 vs. ExPASy TrEMBL
Match: A0A6J1DY58 (uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025663 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-24
Identity = 68/163 (41.72%), Postives = 100/163 (61.35%), Query Frame = 0


Query: 1   MKCQAFQIVLEGAARLWYRQLKPKSIDSYQQLRRMFINKFAARQLLKLPPSHLGTTKQQD 60
           +KC+AFQI L  +ARLWYR+L  +SI +Y QLR+ FI++F++R   +   +HL T +Q++
Sbjct: 80  IKCRAFQIALTDSARLWYRRLPARSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKE 139

Query: 61  NESLTEYIARFMDEHLKVVICTDDIAMMYFTTRLNDRKVTIKFRSHSLAFLNEMLAQARQ 120
            E+L EY+ RF++E LKV  C+DD AM YF T L D  +T+K    + A   E+L +A++
Sbjct: 140 GETLREYVTRFLEEQLKVAHCSDDSAMCYFLTGLADENLTVKLGEEAPATFAEVLQKAKK 199

Query: 121 YIDGLELW--------------KANGASRSSCNRNKDLKSSSS 150
            IDG EL               K N   R + +++KD  SSSS
Sbjct: 200 VIDGQELLQTKTDRPEKQIDQKKLNQEKRKADSKSKDKGSSSS 242

The following BLAST results are available for this feature:

BLAST of Moc09g13930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149029.1	6.2e-57	68.72	uncharacterized protein LOC111017548 [Momordica charantia]	[more]
XP_022152851.1	1.1e-50	76.69	uncharacterized protein LOC111020475 [Momordica charantia]	[more]
XP_022156001.1	1.6e-25	50.68	uncharacterized protein LOC111022976 [Momordica charantia]	[more]
XP_022158844.1	2.8e-25	66.06	uncharacterized protein LOC111025310 [Momordica charantia]	[more]
XP_022159250.1	3.1e-24	41.72	uncharacterized protein LOC111025663 [Momordica charantia]	[more]

BLAST of Moc09g13930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g13930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5T3	3.0e-57	68.72	uncharacterized protein LOC111017548 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DIZ8	5.4e-51	76.69	uncharacterized protein LOC111020475 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DTI2	7.9e-26	50.68	uncharacterized protein LOC111022976 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1E0L8	1.4e-25	66.06	uncharacterized protein LOC111025310 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DY58	1.5e-24	41.72	uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Moc09g13930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 6..75 e-value: 1.2E-10 score: 41.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g13930.1	Moc09g13930.1	mRNA