Moc09g13880 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g13880
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Location	chr9: 11872589 .. 11873071 (-)
RNA-Seq Expression	Moc09g13880
Synteny	Moc09g13880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAACTATGTGAGGTTCCTAAACAAGAAGAGAAAGCTGAGAGAGTATGAGACTGTGGCGGTGACCAAGGCTTGCAGCAATATTCACACAAGCAAAATTACAGCAAAGATGAAGGACCCTAGGTACTTCACAATACCCGTTTCCATTGGAGGGCAGAAAATAGGGCTTGCATTATGTGATCTGGGAGCCAGTATTAATCTTATGCCCTTATCCATCTACAACAAGCTGGGTATAGGAGAAGCGAGGCCTACGACAGTGACATTGCAACTTGCGGACCGATCCATCACACATCTGGAAAGGAAAATTGAAGATGTCTTGGTACAAGTTGATAAATTCATTTTTCCTGCTGACTTTATTATTTTGGATTATGATGTAGATAAGGAGCTCCCTATCATCCTTGTGAGGCCATTTCTTGCAACAGGGAGAGCGCTGGTAGACATTCACAAAGGAGAGCTGACAATGCGAGTTCAAGATCAATAA

mRNA sequence

ATGCCAAACTATGTGAGGTTCCTAAACAAGAAGAGAAAGCTGAGAGAGTATGAGACTGTGGCGGTGACCAAGGCTTGCAGCAATATTCACACAAGCAAAATTACAGCAAAGATGAAGGACCCTAGGTACTTCACAATACCCGTTTCCATTGGAGGGCAGAAAATAGGGCTTGCATTATGTGATCTGGGAGCCAGTATTAATCTTATGCCCTTATCCATCTACAACAAGCTGGGTATAGGAGAAGCGAGGCCTACGACAGTGACATTGCAACTTGCGGACCGATCCATCACACATCTGGAAAGGAAAATTGAAGATGTCTTGGTACAAGTTGATAAATTCATTTTTCCTGCTGACTTTATTATTTTGGATTATGATGTAGATAAGGAGCTCCCTATCATCCTTGTGAGGCCATTTCTTGCAACAGGGAGAGCGCTGGTAGACATTCACAAAGGAGAGCTGACAATGCGAGTTCAAGATCAATAA

Coding sequence (CDS)

ATGCCAAACTATGTGAGGTTCCTAAACAAGAAGAGAAAGCTGAGAGAGTATGAGACTGTGGCGGTGACCAAGGCTTGCAGCAATATTCACACAAGCAAAATTACAGCAAAGATGAAGGACCCTAGGTACTTCACAATACCCGTTTCCATTGGAGGGCAGAAAATAGGGCTTGCATTATGTGATCTGGGAGCCAGTATTAATCTTATGCCCTTATCCATCTACAACAAGCTGGGTATAGGAGAAGCGAGGCCTACGACAGTGACATTGCAACTTGCGGACCGATCCATCACACATCTGGAAAGGAAAATTGAAGATGTCTTGGTACAAGTTGATAAATTCATTTTTCCTGCTGACTTTATTATTTTGGATTATGATGTAGATAAGGAGCTCCCTATCATCCTTGTGAGGCCATTTCTTGCAACAGGGAGAGCGCTGGTAGACATTCACAAAGGAGAGCTGACAATGCGAGTTCAAGATCAATAA

Protein sequence

MPNYVRFLNKKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIGLALCDLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFPADFIILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ

Homology

[Close]

BLAST of Moc09g13880 vs. NCBI nr
Match: XP_022148332.1 (uncharacterized protein LOC111017013 [Momordica charantia])

HSP 1 Score: 317.0 bits (811), Expect = 9.3e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MPNYVRFLNKKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIGLALC 60
           MPNYVRFLNKKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIGLALC
Sbjct: 1   MPNYVRFLNKKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIGLALC 60

Query: 61  DLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFPADFI 120
           DLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFPADFI
Sbjct: 61  DLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFPADFI 120

Query: 121 ILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ 161
           ILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ
Sbjct: 121 ILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ 160

[Close]

BLAST of Moc09g13880 vs. NCBI nr
Match: XP_022148334.1 (uncharacterized protein LOC111017014 [Momordica charantia])

HSP 1 Score: 260.4 bits (664), Expect = 1.0e-65
Identity = 135/164 (82.32%), Postives = 146/164 (89.02%), Query Frame = 0


Query: 1   MPNYVRFLN----KKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIG 60
           +PNYVRFL     KKRKLRE ETV +TKACSNI TSKI AKMKDPR FTIP+SIGGQKIG
Sbjct: 90  IPNYVRFLKEILIKKRKLRECETVVMTKACSNILTSKIPAKMKDPRSFTIPISIGGQKIG 149

Query: 61  LALCDLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFP 120
           LALCDLGASINL+PLSIYNKLGIGEARPTTVTLQLAD+S+TH E KIEDVLVQVDKFIFP
Sbjct: 150 LALCDLGASINLIPLSIYNKLGIGEARPTTVTLQLADQSLTHPEGKIEDVLVQVDKFIFP 209

Query: 121 ADFIILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ 161
            DFIILDYD DKE+ II+ RPFLAT RALV++HKG+LTMRV DQ
Sbjct: 210 IDFIILDYDADKEVHIIIRRPFLATERALVNVHKGKLTMRVLDQ 253

[Close]

BLAST of Moc09g13880 vs. NCBI nr
Match: XP_022156728.1 (uncharacterized protein LOC111023573 [Momordica charantia])

HSP 1 Score: 259.2 bits (661), Expect = 2.3e-65
Identity = 137/164 (83.54%), Postives = 144/164 (87.80%), Query Frame = 0


Query: 1   MPNYVRF----LNKKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIG 60
           MPNYVRF    L KKR L +YETVA+T +CS I TSKI AKMKDPR FTI VSI GQ IG
Sbjct: 1   MPNYVRFLKEILTKKRTLGKYETVALTNSCSIILTSKIPAKMKDPRSFTILVSIEGQHIG 60

Query: 61  LALCDLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFP 120
           LALCD GASINL+PLSIYNKLGIG+ARPTTVTLQLADRSI HLE KIEDVLVQVDKFIFP
Sbjct: 61  LALCDPGASINLLPLSIYNKLGIGKARPTTVTLQLADRSIMHLEGKIEDVLVQVDKFIFP 120

Query: 121 ADFIILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ 161
           ADFIILDYD DKE+PIIL RPFLATGRALVD+HKGELTMRVQDQ
Sbjct: 121 ADFIILDYDADKEVPIILGRPFLATGRALVDVHKGELTMRVQDQ 164

[Close]

BLAST of Moc09g13880 vs. NCBI nr
Match: XP_022158977.1 (uncharacterized protein LOC111025423 [Momordica charantia])

HSP 1 Score: 258.8 bits (660), Expect = 3.0e-65
Identity = 134/164 (81.71%), Postives = 142/164 (86.59%), Query Frame = 0


Query: 1   MPNYVRF----LNKKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIG 60
           M NYVRF    L KKRKL EYET+A+TKACSNI TSKI AKMKDP  FTIPVS+G Q+IG
Sbjct: 1   MSNYVRFLKKILTKKRKLGEYETIAMTKACSNILTSKILAKMKDPGSFTIPVSVGRQQIG 60

Query: 61  LALCDLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFP 120
           L LCDLGASINLMPL IYNKLGIGEARPTT TL  ADRSITH + KIED+LVQVDKFIFP
Sbjct: 61  LTLCDLGASINLMPLFIYNKLGIGEARPTTETLHFADRSITHPKGKIEDILVQVDKFIFP 120

Query: 121 ADFIILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ 161
           ADFIILDYD DKE+PIIL RPFLA GRALVD+HKGELTMRVQDQ
Sbjct: 121 ADFIILDYDADKEVPIILGRPFLAIGRALVDVHKGELTMRVQDQ 164

[Close]

BLAST of Moc09g13880 vs. NCBI nr
Match: XP_022151681.1 (uncharacterized protein LOC111019597 [Momordica charantia])

HSP 1 Score: 257.7 bits (657), Expect = 6.7e-65
Identity = 136/164 (82.93%), Postives = 145/164 (88.41%), Query Frame = 0


Query: 1   MPNYVRF----LNKKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIG 60
           M NYVRF    L KKR L +YETVA+TKACS + TSKI AKMKDPR FTIPVSIGGQ++G
Sbjct: 44  MSNYVRFLKEILTKKRTLGKYETVAMTKACSTVLTSKILAKMKDPRSFTIPVSIGGQQLG 103

Query: 61  LALCDLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFP 120
           +ALCDLGA+IN MPLSIY KLGIGEARPTTVTLQLADRSITH E KIEDVLVQVDKFIFP
Sbjct: 104 VALCDLGANINHMPLSIY-KLGIGEARPTTVTLQLADRSITHPEGKIEDVLVQVDKFIFP 163

Query: 121 ADFIILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ 161
           AD IILDYD DKE+PIIL RPFLATGRALVD+HKGELTMRVQDQ
Sbjct: 164 ADLIILDYDADKEVPIILGRPFLATGRALVDVHKGELTMRVQDQ 206

[Close]

BLAST of Moc09g13880 vs. ExPASy TrEMBL
Match: A0A6J1D4S8 (uncharacterized protein LOC111017013 OS=Momordica charantia OX=3673 GN=LOC111017013 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.5e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MPNYVRFLNKKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIGLALC 60
           MPNYVRFLNKKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIGLALC
Sbjct: 1   MPNYVRFLNKKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIGLALC 60

Query: 61  DLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFPADFI 120
           DLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFPADFI
Sbjct: 61  DLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFPADFI 120

Query: 121 ILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ 161
           ILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ
Sbjct: 121 ILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ 160

[Close]

BLAST of Moc09g13880 vs. ExPASy TrEMBL
Match: A0A6J1D3P6 (uncharacterized protein LOC111017014 OS=Momordica charantia OX=3673 GN=LOC111017014 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.0e-66
Identity = 135/164 (82.32%), Postives = 146/164 (89.02%), Query Frame = 0


Query: 1   MPNYVRFLN----KKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIG 60
           +PNYVRFL     KKRKLRE ETV +TKACSNI TSKI AKMKDPR FTIP+SIGGQKIG
Sbjct: 90  IPNYVRFLKEILIKKRKLRECETVVMTKACSNILTSKIPAKMKDPRSFTIPISIGGQKIG 149

Query: 61  LALCDLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFP 120
           LALCDLGASINL+PLSIYNKLGIGEARPTTVTLQLAD+S+TH E KIEDVLVQVDKFIFP
Sbjct: 150 LALCDLGASINLIPLSIYNKLGIGEARPTTVTLQLADQSLTHPEGKIEDVLVQVDKFIFP 209

Query: 121 ADFIILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ 161
            DFIILDYD DKE+ II+ RPFLAT RALV++HKG+LTMRV DQ
Sbjct: 210 IDFIILDYDADKEVHIIIRRPFLATERALVNVHKGKLTMRVLDQ 253

[Close]

BLAST of Moc09g13880 vs. ExPASy TrEMBL
Match: A0A6J1DRE8 (uncharacterized protein LOC111023573 OS=Momordica charantia OX=3673 GN=LOC111023573 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.1e-65
Identity = 137/164 (83.54%), Postives = 144/164 (87.80%), Query Frame = 0


Query: 1   MPNYVRF----LNKKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIG 60
           MPNYVRF    L KKR L +YETVA+T +CS I TSKI AKMKDPR FTI VSI GQ IG
Sbjct: 1   MPNYVRFLKEILTKKRTLGKYETVALTNSCSIILTSKIPAKMKDPRSFTILVSIEGQHIG 60

Query: 61  LALCDLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFP 120
           LALCD GASINL+PLSIYNKLGIG+ARPTTVTLQLADRSI HLE KIEDVLVQVDKFIFP
Sbjct: 61  LALCDPGASINLLPLSIYNKLGIGKARPTTVTLQLADRSIMHLEGKIEDVLVQVDKFIFP 120

Query: 121 ADFIILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ 161
           ADFIILDYD DKE+PIIL RPFLATGRALVD+HKGELTMRVQDQ
Sbjct: 121 ADFIILDYDADKEVPIILGRPFLATGRALVDVHKGELTMRVQDQ 164

[Close]

BLAST of Moc09g13880 vs. ExPASy TrEMBL
Match: A0A6J1DYK1 (uncharacterized protein LOC111025423 OS=Momordica charantia OX=3673 GN=LOC111025423 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.5e-65
Identity = 134/164 (81.71%), Postives = 142/164 (86.59%), Query Frame = 0


Query: 1   MPNYVRF----LNKKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIG 60
           M NYVRF    L KKRKL EYET+A+TKACSNI TSKI AKMKDP  FTIPVS+G Q+IG
Sbjct: 1   MSNYVRFLKKILTKKRKLGEYETIAMTKACSNILTSKILAKMKDPGSFTIPVSVGRQQIG 60

Query: 61  LALCDLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFP 120
           L LCDLGASINLMPL IYNKLGIGEARPTT TL  ADRSITH + KIED+LVQVDKFIFP
Sbjct: 61  LTLCDLGASINLMPLFIYNKLGIGEARPTTETLHFADRSITHPKGKIEDILVQVDKFIFP 120

Query: 121 ADFIILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ 161
           ADFIILDYD DKE+PIIL RPFLA GRALVD+HKGELTMRVQDQ
Sbjct: 121 ADFIILDYDADKEVPIILGRPFLAIGRALVDVHKGELTMRVQDQ 164

[Close]

BLAST of Moc09g13880 vs. ExPASy TrEMBL
Match: A0A6J1DFE5 (uncharacterized protein LOC111019597 OS=Momordica charantia OX=3673 GN=LOC111019597 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.2e-65
Identity = 136/164 (82.93%), Postives = 145/164 (88.41%), Query Frame = 0


Query: 1   MPNYVRF----LNKKRKLREYETVAVTKACSNIHTSKITAKMKDPRYFTIPVSIGGQKIG 60
           M NYVRF    L KKR L +YETVA+TKACS + TSKI AKMKDPR FTIPVSIGGQ++G
Sbjct: 44  MSNYVRFLKEILTKKRTLGKYETVAMTKACSTVLTSKILAKMKDPRSFTIPVSIGGQQLG 103

Query: 61  LALCDLGASINLMPLSIYNKLGIGEARPTTVTLQLADRSITHLERKIEDVLVQVDKFIFP 120
           +ALCDLGA+IN MPLSIY KLGIGEARPTTVTLQLADRSITH E KIEDVLVQVDKFIFP
Sbjct: 104 VALCDLGANINHMPLSIY-KLGIGEARPTTVTLQLADRSITHPEGKIEDVLVQVDKFIFP 163

Query: 121 ADFIILDYDVDKELPIILVRPFLATGRALVDIHKGELTMRVQDQ 161
           AD IILDYD DKE+PIIL RPFLATGRALVD+HKGELTMRVQDQ
Sbjct: 164 ADLIILDYDADKEVPIILGRPFLATGRALVDVHKGELTMRVQDQ 206

The following BLAST results are available for this feature:

BLAST of Moc09g13880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148332.1	9.3e-83	100.00	uncharacterized protein LOC111017013 [Momordica charantia]	[more]
XP_022148334.1	1.0e-65	82.32	uncharacterized protein LOC111017014 [Momordica charantia]	[more]
XP_022156728.1	2.3e-65	83.54	uncharacterized protein LOC111023573 [Momordica charantia]	[more]
XP_022158977.1	3.0e-65	81.71	uncharacterized protein LOC111025423 [Momordica charantia]	[more]
XP_022151681.1	6.7e-65	82.93	uncharacterized protein LOC111019597 [Momordica charantia]	[more]

BLAST of Moc09g13880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g13880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4S8	4.5e-83	100.00	uncharacterized protein LOC111017013 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1D3P6	5.0e-66	82.32	uncharacterized protein LOC111017014 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DRE8	1.1e-65	83.54	uncharacterized protein LOC111023573 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DYK1	1.5e-65	81.71	uncharacterized protein LOC111025423 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DFE5	3.2e-65	82.93	uncharacterized protein LOC111019597 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]

BLAST of Moc09g13880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 22..159 e-value: 1.7E-26 score: 94.6
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 4..146
None	No IPR available	PANTHER	PTHR33067:SF23	SUBFAMILY NOT NAMED	coord: 4..146
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 46..140 e-value: 8.88441E-14 score: 61.1984

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g13880.1	Moc09g13880.1	mRNA