Moc09g13850 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g13850
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr9: 11856684 .. 11859718 (-)
RNA-Seq Expression	Moc09g13850
Synteny	Moc09g13850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCTCCTACGCCTAACACCACTGTGGCGGTGCGCAACGTCTATGACAGATGGATCAAGGCAAATGATAAGGCCAAGGTATACATCTTGGTTAGCATATCTGATGTGCTTGCTAAGAAGCACGAGGACAGGGTCACTACTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTAGACAACCAACCTCACAGGCTCGACATGAAGCCTTTAAGTTCATTTACAACTCCCGCATGAAAGAGGGCTCCTCAGTGCGAGAACATGTTCTCAACCTGATGGTCCACTTCAACGTGGCAGAGTCGAACGGGGTTGTCATAGACGAGCAGAGTCAGGTCAGCTTGATTCTGGAATCTCTTCCAAAGAGTTTCCTGCCATTCTGCAGTAATGCGGTTATGAATAAGCTGGAGTACACTCTTACCACACTCTTAAATGAGCTACATACTTACCAGTCTCTTATGGAAAGTAAGGGACAGGAAGGGGATGTAGGATCGAATGGCAACACTAGAGGGGGGTGAATAGGGTTGCTTACCACTTTTTGAAAATTAAAAATAAATTTAAAGTAATGAACAATTATGCAACCAATAAAAGAAGATTAACAAGAAGAGGAAACATTGAGCAAAATATTTAAGTAAACCTATATGCAATCTACCAAGATTCAAACAAAGGTAAATACTGAATTTAAAAGAGAGAAGAGAAGAGAGTGGTGACACCGAGAAATTTTATAGTGGTTCGGAAATTCCTACTCCACTCCCCAAGACTCCTTCTTGGGTATTTTACTGCAGTGGCTCTCTTAATGGGTGAGAACCAAACCGATCGACCCTCTTTTTGTCCTAGGCTAAAGAGAAACCCAAAATCCTTTTTACTGGTTCAGGATCCAACCAATTTACTTTTCTCACAACCCAAGTTGCACCCACACCTTAATACAAAACCCAATTTGAAAATGTAGAATTAAAAAACAAAGTAGATTACACAAATTTTGCACCAAAGTAATGGCTAAAAAGCCACACTCTAATGAATCTCTCACAAAAAAAATTGAGCAAGTTATGTGTAGGAGAGAATGAAGATTTTGCAAAAGTTAAGAGGAGAATTTGAAAACAAATGATTTTGATTTGATAGTTGGTGTATAGAATGATGGAATTTGGTGGCTTTAAATAGAGTTTCTACGATGAATTTTTGCCATTGTATTTAGGGCAACAAATGATGAATGGTATAGATTAAGATGTGAGGTAAGGAAATGAAATGAAAACATAATTATGGTGATTAAAAGAAATTGGTGGAGATTGAGAAATCATTGAGATTGTGAGTGATTGAGGAGATTGAGAGTGATTGAGGAGACTGAGAGAAATTGGTGGAAATTGATTTGTGGAGATTGAAAGCGCCACATGTCATCTTCTCATTTGTTCGATTGTTGGATGCCACGTCAGCATAAGTATGTCCTCTTGATGCCACATGTCAACTTCTAAGCGGTCCACTTGTCCATGTCACCCACCATGTAAGATTTGTCCACTTGCCACGTCACCCGCTACGTAGAACTTTTCTCCTAACTTGTTTTGACCATAACTTCTTCGTTTAAACTCCGATTTGAATGATTTGACAGACATTTGTTTTGTCCTTTCGAACTCTACACTATGGACACTTTGAAACACTCAAATTGTTAGTTTATACTTTGTCTGTGATCATCAAAATATTTGGTTTGATTGAAGCCATAAAGCTAACAGGGGAGGCAAACGTTGCCACCTCAGAAAAGTTCCACCGAGGTTCGACCGTTGGAGCCAAGTCTGTGCCATCCTCTTCTAGAAGTAAGACTTTCAAGAAGAAGAAGAAGGCCATTGGTAAGGGGCCTAGACCTGACCTCACTGCTGCCACTGCTAAGAAAGGCAAGGCAAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATATGGACGAGCATTGGAAGCGTAACTACCCAAAATACTTGGCTAAAAAGAAGAATGCTAATGAAGGTAAATATGATTTACTTGTTTTGGAAACATGTTTAGTGGAGAACGATGACTCCGCCTAGATACTGGATTCAGGAGCCACTAATCACGTTTGTTCTTTATTTCAGAGAATCAGTTCCTGGAGGCAGCTTGACGCCAGAGAGATGACTCTCAAGGTCGGAATGGGAGAAGTCGTCTCAGCTGTGGCGATAGGGGAGCTCAAGTTGTTTACAAACAAGAATATGTATATATTATTAGATAATGTGTACGTAGTTCCTAAAATTAAAAGGAACTTAATTTCAGTTTCTTGTTTGTTAGAACATTTATATTCCATTTCTTTCAATTTAAATAAAGCGTTCATTTCAGGAAATTGTGTCAATATTTGTTCTGCGTTGCTTGAAAACAACTTGTATGTACTAAGACCAACCATAACTAAAGCAGTTTTAAATACCGAGTTGTTTAAAAATGCTAAAACTCAAATTAAAACTCAAAAAGTTTCTCATAAAGAAAATACATATCTTTGGCACTTAAGATTATGTCACATTAATCTTAATAGGATTGTGAGGTTGGTTAAGAATGGCATTCTAAGCGAGTTAGAAGGCGATTCTTTACCACCATGTGAGTCTTGTCTTGAAGGCAAGATGAATAAAAGACCTTTTACTGGAAAAATTTATAGAGCCAAAGAGCCCTTAGAACTTATACATTTAGACATTTGTGGTCCGATGAATGTTAAAGCTCGAGGAGGGTATGAATACTTCATCTCTTTCACCATAGCACTCTTTTGACGTTTTCTGCTCGCCTCAGACCATCACAACTCCGTTTGGAGTTGGATACATCATAACCTTGTGAACAGTTGACGGGATGGCTTGTAGTACGTGGATGATGGGTCGCCCAAAGATGGCGTTGTATGCAGACCTCCCATCAACCACCACGAACTCGGCTATGTTGGTGACTTGGGCGTCGCCTTAGCTAATTGTAATTGGCAGATCAATGCACCCCTCAGGGATGACAGCCTCCTGTGCGAATCCGACTAG

mRNA sequence

ATGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCTCCTACGCCTAACACCACTGTGGCGGTGCGCAACGTCTATGACAGATGGATCAAGGCAAATGATAAGGCCAAGGTATACATCTTGGTTAGCATATCTGATGTGCTTGCTAAGAAGCACGAGGACAGGGTCACTACTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTAGACAACCAACCTCACAGGCTCGACATGAAGCCTTTAAGTTCATTTACAACTCCCGCATGAAAGAGGGCTCCTCAGTGCGAGAACATGTTCTCAACCTGATGGTCCACTTCAACGTGGCAGAGTCGAACGGGGTTGTCATAGACGAGCAGAGTCAGGTCAGCTTGATTCTGGAATCTCTTCCAAAGAGTTTCCTGCCATTCTGCAGTAATGCGGTTATGAATAAGCTGGAGTACACTCTTACCACACTCTTAAATGAGCTACATACTTACCAGTCTCTTATGGAAACCATAAAGCTAACAGGGGAGGCAAACGTTGCCACCTCAGAAAAGTTCCACCGAGGTTCGACCGTTGGAGCCAAGTCTGTGCCATCCTCTTCTAGAAGTAAGACTTTCAAGAAGAAGAAGAAGGCCATTGGTAAGGGGCCTAGACCTGACCTCACTGCTGCCACTGCTAAGAAAGGCAAGGCAAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATATGGACGAGCATTGGAAGCGTAACTACCCAAAATACTTGGCTAAAAAGAAGAATGCTAATGAAGGAGCCACTAATCACGTTTGTTCTTTATTTCAGAGAATCAGTTCCTGGAGGCAGCTTGACGCCAGAGAGATGACTCTCAAGTACGTGGATGATGGGTCGCCCAAAGATGGCGTTGTATGCAGACCTCCCATCAACCACCACGAACTCGGCTATGTTGGTGACTTGGGCGTCGCCTTAGCTAATTGTAATTGGCAGATCAATGCACCCCTCAGGGATGACAGCCTCCTGTGCGAATCCGACTAG

Coding sequence (CDS)

ATGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCTCCTACGCCTAACACCACTGTGGCGGTGCGCAACGTCTATGACAGATGGATCAAGGCAAATGATAAGGCCAAGGTATACATCTTGGTTAGCATATCTGATGTGCTTGCTAAGAAGCACGAGGACAGGGTCACTACTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTAGACAACCAACCTCACAGGCTCGACATGAAGCCTTTAAGTTCATTTACAACTCCCGCATGAAAGAGGGCTCCTCAGTGCGAGAACATGTTCTCAACCTGATGGTCCACTTCAACGTGGCAGAGTCGAACGGGGTTGTCATAGACGAGCAGAGTCAGGTCAGCTTGATTCTGGAATCTCTTCCAAAGAGTTTCCTGCCATTCTGCAGTAATGCGGTTATGAATAAGCTGGAGTACACTCTTACCACACTCTTAAATGAGCTACATACTTACCAGTCTCTTATGGAAACCATAAAGCTAACAGGGGAGGCAAACGTTGCCACCTCAGAAAAGTTCCACCGAGGTTCGACCGTTGGAGCCAAGTCTGTGCCATCCTCTTCTAGAAGTAAGACTTTCAAGAAGAAGAAGAAGGCCATTGGTAAGGGGCCTAGACCTGACCTCACTGCTGCCACTGCTAAGAAAGGCAAGGCAAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATATGGACGAGCATTGGAAGCGTAACTACCCAAAATACTTGGCTAAAAAGAAGAATGCTAATGAAGGAGCCACTAATCACGTTTGTTCTTTATTTCAGAGAATCAGTTCCTGGAGGCAGCTTGACGCCAGAGAGATGACTCTCAAGTACGTGGATGATGGGTCGCCCAAAGATGGCGTTGTATGCAGACCTCCCATCAACCACCACGAACTCGGCTATGTTGGTGACTTGGGCGTCGCCTTAGCTAATTGTAATTGGCAGATCAATGCACCCCTCAGGGATGACAGCCTCCTGTGCGAATCCGACTAG

Protein sequence

MIDDLRFVLQEDCPQAPTPNTTVAVRNVYDRWIKANDKAKVYILVSISDVLAKKHEDRVTTKEIMDSLQSMFRQPTSQARHEAFKFIYNSRMKEGSSVREHVLNLMVHFNVAESNGVVIDEQSQVSLILESLPKSFLPFCSNAVMNKLEYTLTTLLNELHTYQSLMETIKLTGEANVATSEKFHRGSTVGAKSVPSSSRSKTFKKKKKAIGKGPRPDLTAATAKKGKAKVAEKGKCFHCNMDEHWKRNYPKYLAKKKNANEGATNHVCSLFQRISSWRQLDAREMTLKYVDDGSPKDGVVCRPPINHHELGYVGDLGVALANCNWQINAPLRDDSLLCESD

Homology

[Close]

BLAST of Moc09g13850 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 2.3e-91
Identity = 193/314 (61.46%), Postives = 226/314 (71.97%), Query Frame = 0


Query: 1   MIDDLRFVLQEDCPQAPTPNTTVAVRNVYDRWIKANDKAKVYILVSISDVLAKKHEDRVT 60
           +IDDLRFVL E+CPQ P  N T  VR  Y+RW KAN+KA+ YIL S+S+VLAKKHE  +T
Sbjct: 30  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 89

Query: 61  TKEIMDSLQSMFRQPTSQARHEAFKFIYNSRMKEGSSVREHVLNLMVHFNVAESNGVVID 120
            +EIMDSLQ MF Q + Q +H+A K+IYN+RM EG+SVREHVLN+MVHFNVAE NG VID
Sbjct: 90  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 149

Query: 121 EQSQVSLILESLPKSFLPFCSNAVMNKLEYTLTTLLNELHTYQSLMETIKLTGEANVATS 180
           E SQVS ILESLP+SFL F SNAVMNK+ YTLTTLLNEL T++SLM+     GEANVATS
Sbjct: 150 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 209

Query: 181 -EKFHRGSTVGAKSVPSSSRSKTFKKKKKAIGKGPRPDLTAA-TAKKGKAKVAEKGKCFH 240
             KFHRGST G KS+PSSS +K +KKKK   G+G + +L AA T KK K   A KG CFH
Sbjct: 210 TRKFHRGSTSGTKSMPSSSGNKKWKKKKG--GQGNKANLAAAKTTKKAK---AAKGICFH 269

Query: 241 CNMDEHWKRNYPKYLAKKKNANE------------------------GATNHVCSLFQRI 289
           CN + HWKRN PKYLA+KK A +                        GATNHVCS FQ I
Sbjct: 270 CNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGI 329

[Close]

BLAST of Moc09g13850 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 2.3e-91
Identity = 193/314 (61.46%), Postives = 226/314 (71.97%), Query Frame = 0


Query: 1   MIDDLRFVLQEDCPQAPTPNTTVAVRNVYDRWIKANDKAKVYILVSISDVLAKKHEDRVT 60
           +IDDLRFVL E+CPQ P  N T  VR  Y+RW KAN+KA+ YIL S+S+VLAKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 61  TKEIMDSLQSMFRQPTSQARHEAFKFIYNSRMKEGSSVREHVLNLMVHFNVAESNGVVID 120
            +EIMDSLQ MF Q + Q +H+A K+IYN+RM EG+SVREHVLN+MVHFNVAE NG VID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 121 EQSQVSLILESLPKSFLPFCSNAVMNKLEYTLTTLLNELHTYQSLMETIKLTGEANVATS 180
           E SQVS ILESLP+SFL F SNAVMNK+ YTLTTLLNEL T++SLM+     GEANVATS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 181 -EKFHRGSTVGAKSVPSSSRSKTFKKKKKAIGKGPRPDLTAA-TAKKGKAKVAEKGKCFH 240
             KFHRGST G KS+PSSS +K +KKKK   G+G + +L AA T KK K   A KG CFH
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKKG--GQGNKANLAAAKTTKKAK---AAKGICFH 270

Query: 241 CNMDEHWKRNYPKYLAKKKNANE------------------------GATNHVCSLFQRI 289
           CN + HWKRN PKYLA+KK A +                        GATNHVCS FQ I
Sbjct: 271 CNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGI 330

[Close]

BLAST of Moc09g13850 vs. NCBI nr
Match: KAA0047792.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 2.3e-91
Identity = 193/314 (61.46%), Postives = 226/314 (71.97%), Query Frame = 0


Query: 1   MIDDLRFVLQEDCPQAPTPNTTVAVRNVYDRWIKANDKAKVYILVSISDVLAKKHEDRVT 60
           +IDDLRFVL E+CPQ P  N T  VR  Y+RW KAN+KA+ YIL S+S+VLAKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 61  TKEIMDSLQSMFRQPTSQARHEAFKFIYNSRMKEGSSVREHVLNLMVHFNVAESNGVVID 120
            +EIMDSLQ MF Q + Q +H+A K+IYN+RM EG+SVREHVLN+MVHFNVAE NG VID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 121 EQSQVSLILESLPKSFLPFCSNAVMNKLEYTLTTLLNELHTYQSLMETIKLTGEANVATS 180
           E SQVS ILESLP+SFL F SNAVMNK+ YTLTTLLNEL T++SLM+     GEANVATS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 181 -EKFHRGSTVGAKSVPSSSRSKTFKKKKKAIGKGPRPDLTAA-TAKKGKAKVAEKGKCFH 240
             KFHRGST G KS+PSSS +K +KKKK   G+G + +L AA T KK K   A KG CFH
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKKG--GQGNKANLAAAKTTKKAK---AAKGICFH 270

Query: 241 CNMDEHWKRNYPKYLAKKKNANE------------------------GATNHVCSLFQRI 289
           CN + HWKRN PKYLA+KK A +                        GATNHVCS FQ I
Sbjct: 271 CNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGI 330

[Close]

BLAST of Moc09g13850 vs. NCBI nr
Match: KAA0031826.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0032384.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0039313.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0043789.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0048789.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 2.3e-91
Identity = 193/314 (61.46%), Postives = 226/314 (71.97%), Query Frame = 0


Query: 1   MIDDLRFVLQEDCPQAPTPNTTVAVRNVYDRWIKANDKAKVYILVSISDVLAKKHEDRVT 60
           +IDDLRFVL E+CPQ P  N T  VR  Y+RW KAN+KA+ YIL S+S+VLAKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 61  TKEIMDSLQSMFRQPTSQARHEAFKFIYNSRMKEGSSVREHVLNLMVHFNVAESNGVVID 120
            +EIMDSLQ MF Q + Q +H+A K+IYN+RM EG+SVREHVLN+MVHFNVAE NG VID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 121 EQSQVSLILESLPKSFLPFCSNAVMNKLEYTLTTLLNELHTYQSLMETIKLTGEANVATS 180
           E SQVS ILESLP+SFL F SNAVMNK+ YTLTTLLNEL T++SLM+     GEANVATS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 181 -EKFHRGSTVGAKSVPSSSRSKTFKKKKKAIGKGPRPDLTAA-TAKKGKAKVAEKGKCFH 240
             KFHRGST G KS+PSSS +K +KKKK   G+G + +L AA T KK K   A KG CFH
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKKG--GQGNKANLAAAKTTKKAK---AAKGICFH 270

Query: 241 CNMDEHWKRNYPKYLAKKKNANE------------------------GATNHVCSLFQRI 289
           CN + HWKRN PKYLA+KK A +                        GATNHVCS FQ I
Sbjct: 271 CNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGI 330

[Close]

BLAST of Moc09g13850 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 345.9 bits (886), Expect = 4.0e-91
Identity = 193/314 (61.46%), Postives = 226/314 (71.97%), Query Frame = 0


Query: 1   MIDDLRFVLQEDCPQAPTPNTTVAVRNVYDRWIKANDKAKVYILVSISDVLAKKHEDRVT 60
           +IDDLRFVL E+CPQ P  N T  VR  Y+RW KAN+KA+ YIL S+S+VLAKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 61  TKEIMDSLQSMFRQPTSQARHEAFKFIYNSRMKEGSSVREHVLNLMVHFNVAESNGVVID 120
            +EIMDSLQ MF Q + Q +H+A K+IYN+RM EG+SVREHVLN+MVHFNVAE NG VID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 121 EQSQVSLILESLPKSFLPFCSNAVMNKLEYTLTTLLNELHTYQSLMETIKLTGEANVATS 180
           E SQVS ILESLP+SFL F SNAVMNK+ YTLTTLLNEL T++SLM+     GEANVATS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 181 -EKFHRGSTVGAKSVPSSSRSKTFKKKKKAIGKGPRPDLTAA-TAKKGKAKVAEKGKCFH 240
             KFHRGST G KS+PSSS +K +KKKK   G+G + +L AA T KK K   A KG CFH
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKKG--GQGNKANLAAAKTTKKTK---AAKGICFH 270

Query: 241 CNMDEHWKRNYPKYLAKKKNANE------------------------GATNHVCSLFQRI 289
           CN + HWKRN PKYLA+KK A +                        GATNHVCS FQ I
Sbjct: 271 CNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGI 330

[Close]

BLAST of Moc09g13850 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.1e-91
Identity = 193/314 (61.46%), Postives = 226/314 (71.97%), Query Frame = 0


Query: 1   MIDDLRFVLQEDCPQAPTPNTTVAVRNVYDRWIKANDKAKVYILVSISDVLAKKHEDRVT 60
           +IDDLRFVL E+CPQ P  N T  VR  Y+RW KAN+KA+ YIL S+S+VLAKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 61  TKEIMDSLQSMFRQPTSQARHEAFKFIYNSRMKEGSSVREHVLNLMVHFNVAESNGVVID 120
            +EIMDSLQ MF Q + Q +H+A K+IYN+RM EG+SVREHVLN+MVHFNVAE NG VID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 121 EQSQVSLILESLPKSFLPFCSNAVMNKLEYTLTTLLNELHTYQSLMETIKLTGEANVATS 180
           E SQVS ILESLP+SFL F SNAVMNK+ YTLTTLLNEL T++SLM+     GEANVATS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 181 -EKFHRGSTVGAKSVPSSSRSKTFKKKKKAIGKGPRPDLTAA-TAKKGKAKVAEKGKCFH 240
             KFHRGST G KS+PSSS +K +KKKK   G+G + +L AA T KK K   A KG CFH
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKKG--GQGNKANLAAAKTTKKAK---AAKGICFH 270

Query: 241 CNMDEHWKRNYPKYLAKKKNANE------------------------GATNHVCSLFQRI 289
           CN + HWKRN PKYLA+KK A +                        GATNHVCS FQ I
Sbjct: 271 CNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGI 330

[Close]

BLAST of Moc09g13850 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.1e-91
Identity = 193/314 (61.46%), Postives = 226/314 (71.97%), Query Frame = 0


Query: 1   MIDDLRFVLQEDCPQAPTPNTTVAVRNVYDRWIKANDKAKVYILVSISDVLAKKHEDRVT 60
           +IDDLRFVL E+CPQ P  N T  VR  Y+RW KAN+KA+ YIL S+S+VLAKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 61  TKEIMDSLQSMFRQPTSQARHEAFKFIYNSRMKEGSSVREHVLNLMVHFNVAESNGVVID 120
            +EIMDSLQ MF Q + Q +H+A K+IYN+RM EG+SVREHVLN+MVHFNVAE NG VID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 121 EQSQVSLILESLPKSFLPFCSNAVMNKLEYTLTTLLNELHTYQSLMETIKLTGEANVATS 180
           E SQVS ILESLP+SFL F SNAVMNK+ YTLTTLLNEL T++SLM+     GEANVATS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 181 -EKFHRGSTVGAKSVPSSSRSKTFKKKKKAIGKGPRPDLTAA-TAKKGKAKVAEKGKCFH 240
             KFHRGST G KS+PSSS +K +KKKK   G+G + +L AA T KK K   A KG CFH
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKKG--GQGNKANLAAAKTTKKAK---AAKGICFH 270

Query: 241 CNMDEHWKRNYPKYLAKKKNANE------------------------GATNHVCSLFQRI 289
           CN + HWKRN PKYLA+KK A +                        GATNHVCS FQ I
Sbjct: 271 CNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGI 330

[Close]

BLAST of Moc09g13850 vs. ExPASy TrEMBL
Match: A0A5A7TZD7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001300 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.1e-91
Identity = 193/314 (61.46%), Postives = 226/314 (71.97%), Query Frame = 0


Query: 1   MIDDLRFVLQEDCPQAPTPNTTVAVRNVYDRWIKANDKAKVYILVSISDVLAKKHEDRVT 60
           +IDDLRFVL E+CPQ P  N T  VR  Y+RW KAN+KA+ YIL S+S+VLAKKHE  +T
Sbjct: 30  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 89

Query: 61  TKEIMDSLQSMFRQPTSQARHEAFKFIYNSRMKEGSSVREHVLNLMVHFNVAESNGVVID 120
            +EIMDSLQ MF Q + Q +H+A K+IYN+RM EG+SVREHVLN+MVHFNVAE NG VID
Sbjct: 90  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 149

Query: 121 EQSQVSLILESLPKSFLPFCSNAVMNKLEYTLTTLLNELHTYQSLMETIKLTGEANVATS 180
           E SQVS ILESLP+SFL F SNAVMNK+ YTLTTLLNEL T++SLM+     GEANVATS
Sbjct: 150 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 209

Query: 181 -EKFHRGSTVGAKSVPSSSRSKTFKKKKKAIGKGPRPDLTAA-TAKKGKAKVAEKGKCFH 240
             KFHRGST G KS+PSSS +K +KKKK   G+G + +L AA T KK K   A KG CFH
Sbjct: 210 TRKFHRGSTSGTKSMPSSSGNKKWKKKKG--GQGNKANLAAAKTTKKAK---AAKGICFH 269

Query: 241 CNMDEHWKRNYPKYLAKKKNANE------------------------GATNHVCSLFQRI 289
           CN + HWKRN PKYLA+KK A +                        GATNHVCS FQ I
Sbjct: 270 CNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGI 329

[Close]

BLAST of Moc09g13850 vs. ExPASy TrEMBL
Match: A0A5A7UGV2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002690 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.1e-91
Identity = 193/314 (61.46%), Postives = 226/314 (71.97%), Query Frame = 0


Query: 1   MIDDLRFVLQEDCPQAPTPNTTVAVRNVYDRWIKANDKAKVYILVSISDVLAKKHEDRVT 60
           +IDDLRFVL E+CPQ P  N T  VR  Y+RW KAN+KA+ YIL S+S+VLAKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 61  TKEIMDSLQSMFRQPTSQARHEAFKFIYNSRMKEGSSVREHVLNLMVHFNVAESNGVVID 120
            +EIMDSLQ MF Q + Q +H+A K+IYN+RM EG+SVREHVLN+MVHFNVAE NG VID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 121 EQSQVSLILESLPKSFLPFCSNAVMNKLEYTLTTLLNELHTYQSLMETIKLTGEANVATS 180
           E SQVS ILESLP+SFL F SNAVMNK+ YTLTTLLNEL T++SLM+     GEANVATS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 181 -EKFHRGSTVGAKSVPSSSRSKTFKKKKKAIGKGPRPDLTAA-TAKKGKAKVAEKGKCFH 240
             KFHRGST G KS+PSSS +K +KKKK   G+G + +L AA T KK K   A KG CFH
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKKG--GQGNKANLAAAKTTKKAK---AAKGICFH 270

Query: 241 CNMDEHWKRNYPKYLAKKKNANE------------------------GATNHVCSLFQRI 289
           CN + HWKRN PKYLA+KK A +                        GATNHVCS FQ I
Sbjct: 271 CNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGI 330

[Close]

BLAST of Moc09g13850 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.9e-91
Identity = 193/314 (61.46%), Postives = 226/314 (71.97%), Query Frame = 0


Query: 1   MIDDLRFVLQEDCPQAPTPNTTVAVRNVYDRWIKANDKAKVYILVSISDVLAKKHEDRVT 60
           +IDDLRFVL E+CPQ P  N T  VR  Y+RW KAN+KA+ YIL S+S+VLAKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 61  TKEIMDSLQSMFRQPTSQARHEAFKFIYNSRMKEGSSVREHVLNLMVHFNVAESNGVVID 120
            +EIMDSLQ MF Q + Q +H+A K+IYN+RM EG+SVREHVLN+MVHFNVAE NG VID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 121 EQSQVSLILESLPKSFLPFCSNAVMNKLEYTLTTLLNELHTYQSLMETIKLTGEANVATS 180
           E SQVS ILESLP+SFL F SNAVMNK+ YTLTTLLNEL T++SLM+     GEANVATS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 181 -EKFHRGSTVGAKSVPSSSRSKTFKKKKKAIGKGPRPDLTAA-TAKKGKAKVAEKGKCFH 240
             KFHRGST G KS+PSSS +K +KKKK   G+G + +L AA T KK K   A KG CFH
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKKG--GQGNKANLAAAKTTKKTK---AAKGICFH 270

Query: 241 CNMDEHWKRNYPKYLAKKKNANE------------------------GATNHVCSLFQRI 289
           CN + HWKRN PKYLA+KK A +                        GATNHVCS FQ I
Sbjct: 271 CNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGI 330

The following BLAST results are available for this feature:

BLAST of Moc09g13850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048404.1	2.3e-91	61.46	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	2.3e-91	61.46	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0047792.1	2.3e-91	61.46	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0031826.1	2.3e-91	61.46	gag/pol protein [Cucumis melo var. makuwa] >KAA0032384.1 gag/pol protein [Cucumi...	[more]
TYK14550.1	4.0e-91	61.46	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc09g13850 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g13850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	1.1e-91	61.46	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5A7TWB9	1.1e-91	61.46	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5A7TZD7	1.1e-91	61.46	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G0013...	[more]
A0A5A7UGV2	1.1e-91	61.46	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00269...	[more]
A0A5D3CPJ6	1.9e-91	61.46	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]

BLAST of Moc09g13850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 32..161 e-value: 1.3E-17 score: 63.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..219
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 21..233
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 21..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g13850.1	Moc09g13850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0005488	binding