Moc09g13770 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g13770
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transcription factor MYB34
Location	chr9: 11770532 .. 11771357 (-)
RNA-Seq Expression	Moc09g13770
Synteny	Moc09g13770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCGCGCAACCCTAATCCGCACCAGCCACCGAATGTGAGGATTGAGAAAATAGTAGATGGGGTTCCTGTTGCTGCTAACGCTGAGGTAGCAGTGCCCTCTCTCAATGCTGTATTATTAGCAGATGACATCGACAGAGAAATCAGGGTGTATGCAGCTCCAGCATTTTATAATTTCAACCCAGTAATCACGGAGCCTAAAATTGTAGCCCCAAAGTTTAAACTAAAGCCTGTAATGTTTCAGATGCTCCAAACAGTGGGTCATTTTCATGGGCATCCTACTAAGGACCCGCATTCGCACCTGAAGTTTTTTATGAGGGTATGCAATTCGTTCAAGGATGAAGGAGAAACAACCCATATTCCAATATGTATAATCTCAGCTGGAGAAATCACCCAAACATCAGTTGGAGGGAAAATCAGGGAGGAAATAGTGTGGCACATTCATTGTTCCAGCATATCAGTAGAAAGGAAGTTATCACCTACGATTTGCGAATCAAGGTTTGGTGGTAGCACAGAAGCCCGCAGAATAATCGTTTGCATCATTAGAAAAGCTGATGAAGCAGTATATGGCCAATAATGACACTACTGTACAAAGCCAGGCCACATCACTAAGAAATCTAGAGCTGCAAGTAGGCTAGTTAGCAGCTGATTTGAAAAGCAAACCTTATGGAGCATTGCCGAGCGATACTGAAGTACCAAAGAGGGATGACAAAGAGCAATGTAAGGTTCTCACACTGCGAAGTGGGAAAGCATTACCTTCGCCACATACGAATGCTCTAGAGACTTTGAGCGAGCCTACTCTGAAAGAATCAGGAGAATCTTAG

mRNA sequence

ATGAATCCGCGCAACCCTAATCCGCACCAGCCACCGAATGTGAGGATTGAGAAAATAGTAGATGGGGTTCCTGTTGCTGCTAACGCTGAGGTAGCAGTGCCCTCTCTCAATGCTGTATTATTAGCAGATGACATCGACAGAGAAATCAGGGTGTATGCAGCTCCAGCATTTTATAATTTCAACCCAGTAATCACGGAGCCTAAAATTGTAGCCCCAAAGTTTAAACTAAAGCCTGTAATGTTTCAGATGCTCCAAACAGTGGGTCATTTTCATGGGCATCCTACTAAGGACCCGCATTCGCACCTGAAGTTTTTTATGAGGGTATGCAATTCGTTCAAGGATGAAGGAGAAACAACCCATATTCCAATATGTATAATCTCAGCTGGAGAAATCACCCAAACATCAGTTGGAGGGAAAATCAGGGAGGAAATAGTGTGGCACATTCATTGTTCCAGCATATCAGTAGAAAGGAAGTTATCACCTACGATTTGCGAATCAAGGTTTGGTGGTAGCACAGAAGCCCGCAGAATAATCGTTTGCATCATTAGAAAAGCTGATGAAGCATTAGCAGCTGATTTGAAAAGCAAACCTTATGGAGCATTGCCGAGCGATACTGAAGTACCAAAGAGGGATGACAAAGAGCAATGTAAGGTTCTCACACTGCGAAGTGGGAAAGCATTACCTTCGCCACATACGAATGCTCTAGAGACTTTGAGCGAGCCTACTCTGAAAGAATCAGGAGAATCTTAG

Coding sequence (CDS)

ATGAATCCGCGCAACCCTAATCCGCACCAGCCACCGAATGTGAGGATTGAGAAAATAGTAGATGGGGTTCCTGTTGCTGCTAACGCTGAGGTAGCAGTGCCCTCTCTCAATGCTGTATTATTAGCAGATGACATCGACAGAGAAATCAGGGTGTATGCAGCTCCAGCATTTTATAATTTCAACCCAGTAATCACGGAGCCTAAAATTGTAGCCCCAAAGTTTAAACTAAAGCCTGTAATGTTTCAGATGCTCCAAACAGTGGGTCATTTTCATGGGCATCCTACTAAGGACCCGCATTCGCACCTGAAGTTTTTTATGAGGGTATGCAATTCGTTCAAGGATGAAGGAGAAACAACCCATATTCCAATATGTATAATCTCAGCTGGAGAAATCACCCAAACATCAGTTGGAGGGAAAATCAGGGAGGAAATAGTGTGGCACATTCATTGTTCCAGCATATCAGTAGAAAGGAAGTTATCACCTACGATTTGCGAATCAAGGTTTGGTGGTAGCACAGAAGCCCGCAGAATAATCGTTTGCATCATTAGAAAAGCTGATGAAGCATTAGCAGCTGATTTGAAAAGCAAACCTTATGGAGCATTGCCGAGCGATACTGAAGTACCAAAGAGGGATGACAAAGAGCAATGTAAGGTTCTCACACTGCGAAGTGGGAAAGCATTACCTTCGCCACATACGAATGCTCTAGAGACTTTGAGCGAGCCTACTCTGAAAGAATCAGGAGAATCTTAG

Protein sequence

MNPRNPNPHQPPNVRIEKIVDGVPVAANAEVAVPSLNAVLLADDIDREIRVYAAPAFYNFNPVITEPKIVAPKFKLKPVMFQMLQTVGHFHGHPTKDPHSHLKFFMRVCNSFKDEGETTHIPICIISAGEITQTSVGGKIREEIVWHIHCSSISVERKLSPTICESRFGGSTEARRIIVCIIRKADEALAADLKSKPYGALPSDTEVPKRDDKEQCKVLTLRSGKALPSPHTNALETLSEPTLKESGES

Homology

[Close]

BLAST of Moc09g13770 vs. NCBI nr
Match: XP_022150863.1 (uncharacterized protein LOC111018910 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-22
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MNPRNPNPHQ--PPNVRIEKIVDGVPVAANAEVAVPSLNAVLLADDIDREIRVYAAPAFY 60
          MNP NPN HQ  PPNVRIE+IVDGVPVA N EV VPSLN VLLA  IDREIR YAAP FY
Sbjct: 1  MNPPNPNLHQPIPPNVRIEEIVDGVPVATNHEVIVPSLNVVLLAKAIDREIRAYAAPTFY 60

Query: 61 NFNPVITEPKIVAPKFKLK 78
          NFNPVITE +I APKF+LK
Sbjct: 61 NFNPVITEREITAPKFELK 79

[Close]

BLAST of Moc09g13770 vs. NCBI nr
Match: XP_022158768.1 (uncharacterized protein LOC111025234 [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 7.1e-21
Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 6   PNPHQPPNVRIEKIVDGVPVAANAEVAVPSLNAVLLADDIDREIRVYAAPAFYNFNPVIT 65
           PNP   P +++E++   V   A      P LNA+LL DDI++EIR YAAPAF++FNPVI 
Sbjct: 5   PNPPIQPKLKVERVQGDV---AGGHALTPPLNAILLGDDIEQEIRAYAAPAFFDFNPVIV 64

Query: 66  EPKIVAPKFKLKPVMFQMLQTVGHFHGHPTKDPHSHLKFFMRVCNSFKDE 116
           +P I A +F+LKP MFQMLQ    FHG  ++DP+ HL++FM+V NS K E
Sbjct: 65  DPIIEADRFELKPAMFQMLQI---FHGLASEDPYRHLQYFMQVANSSKVE 108

[Close]

BLAST of Moc09g13770 vs. NCBI nr
Match: XP_022158490.1 (uncharacterized protein LOC111024970 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 8.6e-19
Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 3   PRNPNPHQPPNVRIEKIVDGVPVAANAEVAVPSLNAVLLADDIDREIRVYAAPAFYNFNP 62
           PR PNP       +E I +G  V      A P LN +LL DD +R IR YAAPA + F+P
Sbjct: 5   PRLPNP------VVEGINEGEVVVL---AAAPPLNVILLVDDGERVIRAYAAPAIHGFHP 64

Query: 63  VITEPKIVAPKFKLKPVMFQMLQTVGHFHGHPTKDPHSHLKFFMRVCNSF 113
           VI  P I A +F+LK +MFQMLQTVG F G+P++DPH HL++F+ V +SF
Sbjct: 65  VIAGPAIEAERFELKSIMFQMLQTVGQFFGNPSEDPHLHLRYFLEVSDSF 105

[Close]

BLAST of Moc09g13770 vs. NCBI nr
Match: ERM93404.1 (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-18
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 31  VAVPSLNAVLLADDIDREIRVYAAPAFYNFNPVITEPKIVAPKFKLKPVMFQMLQTVGHF 90
           +A   +N ++LADD  R IR YAAP F   NP I  P+I AP+F+LKPVMFQMLQTVG F
Sbjct: 5   IAQQIVNPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQF 64

Query: 91  HGHPTKDPHSHLKFFMRVCNSFKDEGETTHI 122
            G PT+DPH HL+ F+ V +SFK +G +  +
Sbjct: 65  SGMPTEDPHLHLRSFLEVSDSFKIQGVSEEV 95

[Close]

BLAST of Moc09g13770 vs. NCBI nr
Match: XP_022153147.1 (probable serine/threonine-protein kinase PBL11 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 7.3e-18
Identity = 56/122 (45.90%), Postives = 78/122 (63.93%), Query Frame = 0


Query: 2   NPRNPNPHQPPNVRIEKIVDGVPVAANAEVAVPSLNAVLLADDIDREIRVYAAPAFYNFN 61
           NP +  P + PN  +E +   VP AA      P+LN +LLADD +R IR YAA   ++F+
Sbjct: 34  NPMDQLP-RLPNPMVEVV---VPAAA------PTLNTILLADDGERAIRAYAALVLHSFH 93

Query: 62  PVITEPKIVAPKFKLKPVMFQMLQTVGHFHGHPTKDPHSHLKFFMRVCNSFKDEGETTHI 121
           PVI  P+I A +F+LKPVMFQMLQTVG F G+P +D H HL++F+ + N +    E T +
Sbjct: 94  PVIAGPEIEAERFELKPVMFQMLQTVGKFFGNPCEDSHLHLRYFLEIKNFYNGLSEATRL 145

Query: 122 PI 124
            +
Sbjct: 154 VV 145

[Close]

BLAST of Moc09g13770 vs. ExPASy TrEMBL
Match: A0A6J1DAK9 (uncharacterized protein LOC111018910 OS=Momordica charantia OX=3673 GN=LOC111018910 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.2e-23
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MNPRNPNPHQ--PPNVRIEKIVDGVPVAANAEVAVPSLNAVLLADDIDREIRVYAAPAFY 60
          MNP NPN HQ  PPNVRIE+IVDGVPVA N EV VPSLN VLLA  IDREIR YAAP FY
Sbjct: 1  MNPPNPNLHQPIPPNVRIEEIVDGVPVATNHEVIVPSLNVVLLAKAIDREIRAYAAPTFY 60

Query: 61 NFNPVITEPKIVAPKFKLK 78
          NFNPVITE +I APKF+LK
Sbjct: 61 NFNPVITEREITAPKFELK 79

[Close]

BLAST of Moc09g13770 vs. ExPASy TrEMBL
Match: A0A6J1DX14 (uncharacterized protein LOC111025234 OS=Momordica charantia OX=3673 GN=LOC111025234 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-21
Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 6   PNPHQPPNVRIEKIVDGVPVAANAEVAVPSLNAVLLADDIDREIRVYAAPAFYNFNPVIT 65
           PNP   P +++E++   V   A      P LNA+LL DDI++EIR YAAPAF++FNPVI 
Sbjct: 5   PNPPIQPKLKVERVQGDV---AGGHALTPPLNAILLGDDIEQEIRAYAAPAFFDFNPVIV 64

Query: 66  EPKIVAPKFKLKPVMFQMLQTVGHFHGHPTKDPHSHLKFFMRVCNSFKDE 116
           +P I A +F+LKP MFQMLQ    FHG  ++DP+ HL++FM+V NS K E
Sbjct: 65  DPIIEADRFELKPAMFQMLQI---FHGLASEDPYRHLQYFMQVANSSKVE 108

[Close]

BLAST of Moc09g13770 vs. ExPASy TrEMBL
Match: A0A6J1DVZ9 (uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024970 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.2e-19
Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 3   PRNPNPHQPPNVRIEKIVDGVPVAANAEVAVPSLNAVLLADDIDREIRVYAAPAFYNFNP 62
           PR PNP       +E I +G  V      A P LN +LL DD +R IR YAAPA + F+P
Sbjct: 5   PRLPNP------VVEGINEGEVVVL---AAAPPLNVILLVDDGERVIRAYAAPAIHGFHP 64

Query: 63  VITEPKIVAPKFKLKPVMFQMLQTVGHFHGHPTKDPHSHLKFFMRVCNSF 113
           VI  P I A +F+LK +MFQMLQTVG F G+P++DPH HL++F+ V +SF
Sbjct: 65  VIAGPAIEAERFELKSIMFQMLQTVGQFFGNPSEDPHLHLRYFLEVSDSF 105

[Close]

BLAST of Moc09g13770 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.1e-19
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 31  VAVPSLNAVLLADDIDREIRVYAAPAFYNFNPVITEPKIVAPKFKLKPVMFQMLQTVGHF 90
           +A   +N ++LADD  R IR YAAP F   NP I  P+I AP+F+LKPVMFQMLQTVG F
Sbjct: 5   IAQQIVNPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQF 64

Query: 91  HGHPTKDPHSHLKFFMRVCNSFKDEGETTHI 122
            G PT+DPH HL+ F+ V +SFK +G +  +
Sbjct: 65  SGMPTEDPHLHLRSFLEVSDSFKIQGVSEEV 95

[Close]

BLAST of Moc09g13770 vs. ExPASy TrEMBL
Match: A0A6J1DI54 (probable serine/threonine-protein kinase PBL11 OS=Momordica charantia OX=3673 GN=LOC111020716 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.5e-18
Identity = 56/122 (45.90%), Postives = 78/122 (63.93%), Query Frame = 0


Query: 2   NPRNPNPHQPPNVRIEKIVDGVPVAANAEVAVPSLNAVLLADDIDREIRVYAAPAFYNFN 61
           NP +  P + PN  +E +   VP AA      P+LN +LLADD +R IR YAA   ++F+
Sbjct: 34  NPMDQLP-RLPNPMVEVV---VPAAA------PTLNTILLADDGERAIRAYAALVLHSFH 93

Query: 62  PVITEPKIVAPKFKLKPVMFQMLQTVGHFHGHPTKDPHSHLKFFMRVCNSFKDEGETTHI 121
           PVI  P+I A +F+LKPVMFQMLQTVG F G+P +D H HL++F+ + N +    E T +
Sbjct: 94  PVIAGPEIEAERFELKPVMFQMLQTVGKFFGNPCEDSHLHLRYFLEIKNFYNGLSEATRL 145

Query: 122 PI 124
            +
Sbjct: 154 VV 145

The following BLAST results are available for this feature:

BLAST of Moc09g13770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150863.1	1.3e-22	78.48	uncharacterized protein LOC111018910 [Momordica charantia]	[more]
XP_022158768.1	7.1e-21	51.82	uncharacterized protein LOC111025234 [Momordica charantia]	[more]
XP_022158490.1	8.6e-19	50.91	uncharacterized protein LOC111024970 [Momordica charantia]	[more]
ERM93404.1	1.5e-18	54.95	hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda]	[more]
XP_022153147.1	7.3e-18	45.90	probable serine/threonine-protein kinase PBL11 [Momordica charantia]	[more]

BLAST of Moc09g13770 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g13770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAK9	6.2e-23	78.48	uncharacterized protein LOC111018910 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DX14	3.4e-21	51.82	uncharacterized protein LOC111025234 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DVZ9	4.2e-19	50.91	uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
U5CUI2	7.1e-19	54.95	Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT...	[more]
A0A6J1DI54	3.5e-18	45.90	probable serine/threonine-protein kinase PBL11 OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Moc09g13770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g13770.1	Moc09g13770.1	mRNA