Moc09g13560 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g13560
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr9: 11488985 .. 11493834 (+)
RNA-Seq Expression	Moc09g13560
Synteny	Moc09g13560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGGAACAAATCGGTGGTCGGCCCTAGTAGTGTCAAGGTGCTTGAAGCCATGGTCGTATTAGAAGGACTTCGGACTGTAAATTTCTTGGAGACTTTTACGATAAAAGTTGAAACGGACTTGGTGGAGGTGGCGTCACTCCTACGAGAAGAAGACATCGACTTATTTGAGATTGCTTGGGTTATCCATGAAATTCGATCTATGAAATTTTCGTGTGGAGTGGTTGATTTTTTAAAAGTGGATCGGGTGGCAAATTTTGGTGCCTCTTGATCGGTGGGCTTCAGAATATAGGGAAAGTGAATAGTGGGATCTCGTAATCTCTTGTTGGCTAGAAGCTGTGGCCATTAGGGACTTTTCTGTTGTTTTTTTAATGAAGTACTTTATTTTTAAAAAAAAAATTTTAGACCCTAGATCGAATATATGTCTTTGTTTTTACATTTTTCTTTCTTAAACTTCATTCTAAAATCTTGTTGTACTTGTTAATTGCATTACATTTTGTCCACAAAATAAAAATATAAAAAGTCGGTGTTTCCATTATTATTTTCAATTTATTATTTTCTAGGTTGTTCTAATTTGACTTGTTTGAAAGTAAAAGGTATGCATTTTGATCATCTATTCTGGAAAATCGAGAAAATAGATAACATTAATTTTTGTGTTTTTTTTCCTTACCTGAAAAACTTACAAAATCTGAATTGCTAGTGTAAAACTATAATTGTGATATAAACTAATCGATTGACATTCATGGACATCAATTAAAATCTTGTTGTCCTTGTTAATTGTATTACATTTTGTCCATAAAATTAAAATACAAAAAAGTGTTTCCATTATTCTTTTCATATTGTTGTCTCTTTAATTTCATAAATCAACATCTAATCTACAACTTATTCTTCTCTAGGTTGTTCTAATTCGACTTGTTTGAGGGTGAAAAGTATGCATTTTGATCATCTATTGTGGAAAATTGAGAAAATAGATTACATTAATTTTTGTGTTCTTTTTTTTTCCTTACCTGAAAAACTTACAAGATCTGAATTTCTAGTGTAAAACTATAATTCTGATACAAACTAATCAATTGACATTCATGGACATCAATTACTATTGAATTTTAACAACAATAAATCGTTGAGTCATAAAGTTTAGTAGTTACAGTTTTTGCACGTTCAATTTTTAGCCATTTAAGTGATGTTCGAGCAGAAAAGTGGGGTTGTGGAGTTTGAAGTTGTTAATCTGGAGAGCTGATTAGTCTATAATTGTTTATGTTTAATCTATGTTCAAGGTGCAAAGCGTTGTTTACCTTGGAGTTTTGAAGTATGTGTACATTGTGTAAACTTAAGTCTAGAGTTATGTAAGTTAAGTTTTTGTTTGTTGATTTTACCACTATAATTTTATTGTAATATGCAATTAGATCTATATTCCAATTCATTTTTCAATTTTAAATTAATTAAAAGATATTTACTCCTGTCAAATCAAATTTTGAGTTTTTATGTTACATATTATTTTAAGAATAGTTCGTAAATTCGCTGAAGTAGTTGTTTTGATTTAGTTGGGCGCAACAATTAAGATAAATAATAAGAAAAATATTATATCAAGTATAATAATTAGCAATGACTAAAAAATTAACAAAATTATGTACAGTGGCAAGCAAAGGTGTGAAATACAAAATTATGTTTACAAAATGTTGTAAAAGGGATAATTTTGTCATTTTCGATGAGATACATGGAAAATATATATATATATATATATATTTTAAGTTGATTGGGAAAGAGAGGAAGTTTTCAGCCTTCTAGACCAACATATCTATAAGTTGGACACTATCCTCTAACTCTGGTATCTACTCAAACTGTTGAATCGCCTCTTTGCATCGTGCGATCTTTAGTTCGTACTCTACCTTCGGTCAGCTGCAAGCTTCTCCAACTAAGTGGTTTGCTCATTCATTGTTGTTCGAACCATGTCTATCATTTCTAAGGTATATGAACCTTATTTCCTCTTGCCTCCATTTGTTCAAATTTCAATGAAATTGATAGTATTCCCACCCATGTCATTTGAATTTGTGTCCGACTCCTCTCATTCTCCCAACTCTGTACATGAACCCATCTCTCTATTAACAATGTTGTGAATTGGATAGAAGGATTTGCCTTGAAGAATTGTCCATCTTTCTTAAGGAAATCGAATACCCTCTCAATAACATTCCTTACAAAAGAATAATTCATTACTTCATGTTAAACAATTCTCTAGGACTTGTTAATGCATTCCCTCCTCCACACCAGAATACATTGGCATTAGGGCACCCACATCACATAGATAATAATATCATGTATTAGTGGCAGATCCAGAAATTTTTTTTCAGGGAAGCTTTATATAATATTCAGTAAATATGTTTTACGAACTTGGTCTCGAATGTTACAATTCTAAATTGTTGATCAAAAATTTTATGTTAGGGGATTGCAAAAAAATAATATGAACGTATTGATATGTATTTAGTTTATATATTTTAATGCCAAATTTTTGTATGGCGTTTTAATTAATAGGTTTCTGAACATTAAAAAAATTATATATGAATAAGTTCTTAAACTAATAGATTGTTGAACTCACACTAGTAGAAATTCGGATTCTCGTGACATTTTTAATGTTGTCACCTATGCTCCCATCACAAAAGGTATTGGTGATATTTTTAAAATATCAAGAAAAGTAGCATTCGTGATGGTTTAAAAATGTCATGCAAAATATCGTTTTCCATGACGCTTTTTAAACGTCAAGAAAAAAATTTTATGACGCTTTTAGACGTCACGAATTCTTTTTTCATGAAACGTCACGGTAAATGAGTTACCGTGATGGGTTTAGAATTTGTGACGGTTAAACAACGTCATGAAAACAGAATTCGTAGCGAGAAAATGCCACGTGACAAGCTTTTGTGACGTTTTTTAAACATCACAAAAAATGATTTCATGACATCTAAAAAACCGTCATAAAAATGATTTCGTGACGCTTTAAAAACGTCATAAAAATATAATATGCAACGTTTTGAAACGTCACGAAAAATTATATTTTGTGATTATCAGAAAACGACATAGAAAATGGATTTGATTTTGCTGGCAGACGTCAAGGAAGACAAATTTCATATAATTAAATTGTCAATCGACATCGTGAAGACATTAATTTATATAACAAAGTTAAAATCAAATAGGAACAAAGTATTCCCCAATTTGTTAGTACAATATATTAAACACATGTACATAACATGTTCAAATTGCTACAAGTTTAAAGTACATAATTAAACATGTCTCACACACCAACCCCAACAAAGAAGCTTATCCATCAATTAGTTGCATTCCTAATTGACTACTTCTTTGAGTTCGTGAAAGACCTAATGAAGAAAACAATACCCAAGTTAGATAAATGAATAACTACCTATATCAATCCTCTTCTAACATAATCTAATTAGCAATATTCACAACATTACACACAAATTTCATAAATTAATCTCTTTTATCAAGTAACAATAATTTGCTTCACTAAAAAAATAAAATGAACAAAATAAACGAAATGTCAACTAGAGCTAGCTCACTAATATGGCCAACATATATTGGAATGTATAAATGATTCGGAATTTTACATATTAAAAGCTAATTAATTAGATAAAGTAATGAAAATTATACTTACTACCTACCTTTGATTGCTCATCTACAACTAAGAAAACATATTAACGGTTTTTGCTCTAGAGCATCACATATGAAAGGCTCTAACACTTATAGTGTTACAATCCATGCAAATATTGTGCTTTCTAAAATAAGACATTGAAAAAATGGTAAGATCCCTAAGTTATGAATAAAGGGACAATGAGACTTTAGAATTGTATCCAAAATACTACAAACTATATTCTTCAACCAGTAAATGCAATGGTTATAAATTCTAACATCCATTTCTTGAACTAAATAAAAAGGTAAAATTTGAACTTACAAAAACTCTTCCTAAGAAAGGTAAAATTTGCAAACTCAATGTAAGCTACAATCATGTTGAACCAACCCTCCTCCCTCCCCCAACCAACTGTCACAACCATAATGCAAATTCTAAATTATAAGTAAAATTATCTCCATCATTTCATCACATAATTTGAAAGTAAAACAAAATTTTGCAAACTTTAAAATAAACTGTGTTGTATAAAGGTCAAGAATCTTATTTAAGTGGGTAGATTGGAGGAATCCAACACGCTAGTCAAGATGATTACAAAAAGACTCCAATTAGCATCCATAACTATCAAAACAATGTCCAGCCCATAAACCTTGCACCAAACATTATACACATAAACATATATTATTTATTCCAATGAAAATGTGACAACATTTTGCTACACAACTTGTTTGGGGAAGGGAATACCCTGAACACGTGGAGGACCTTTATTGGTGCTCCAAGATGACTCATGAGTCATGCCCAGCTTGGATAGCCGAGATGGCCGCCACCAACGCCGACAAATGCTAAGTATGAGGGCCGAGGTGAACCTGGCCCAGGTCTGACCTACCGGGGAGCTCGGTATGGGCCGAGATGAGCAACTGTCCGGCGTGATTATCGGGCGTAACCGTCGGTCCCGAGATACCGAGTGTAACCGACGGTCTCGGGATTACCGAATGTAACCGTCGCTAGATTAGCGGGACCACCACCCATAAGTAGAGGACGTCACTCCCCGATCAGGTACGATGATTCTGGCTTCGAACTAAACTTGGAATCCGACCTATACTGACTTGATCGTCGGAGTGCTCACCTTTTTGTGCAGGTCCGCCCTAGTGTTCAGGTCGGTCCGGAGGCCGAGTTCGAGCTACAATCAGGAACACACTGTTGTGCACATCTTTGCATAA

mRNA sequence

ATGGCTGGGAACAAATCGGTGGTCGGCCCTAGTAGTGTCAAGGTGCTTGAAGCCATGGTCGTATTAGAAGGACTTCGGACTGTAAATTTCTTGGAGACTTTTACGATAAAAGTTGAAACGGACTTGGTGGAGGTGGCGTCACTCCTACGAGAAGAAGACATCGACTTATTTGAGATTGCTTGGGTTATCCATGAAATTCGATCTATGAAATTTTCGTGTGGAGTGCCGAGATGGCCGCCACCAACGCCGACAAATGCTAAGTATGAGGGCCGAGGTGAACCTGGCCCAGGTCTGACCTACCGGGGAGCTCGGTCCGCCCTAGTGTTCAGGTCGGTCCGGAGGCCGAGTTCGAGCTACAATCAGGAACACACTGTTGTGCACATCTTTGCATAA

Coding sequence (CDS)

ATGGCTGGGAACAAATCGGTGGTCGGCCCTAGTAGTGTCAAGGTGCTTGAAGCCATGGTCGTATTAGAAGGACTTCGGACTGTAAATTTCTTGGAGACTTTTACGATAAAAGTTGAAACGGACTTGGTGGAGGTGGCGTCACTCCTACGAGAAGAAGACATCGACTTATTTGAGATTGCTTGGGTTATCCATGAAATTCGATCTATGAAATTTTCGTGTGGAGTGCCGAGATGGCCGCCACCAACGCCGACAAATGCTAAGTATGAGGGCCGAGGTGAACCTGGCCCAGGTCTGACCTACCGGGGAGCTCGGTCCGCCCTAGTGTTCAGGTCGGTCCGGAGGCCGAGTTCGAGCTACAATCAGGAACACACTGTTGTGCACATCTTTGCATAA

Protein sequence

MAGNKSVVGPSSVKVLEAMVVLEGLRTVNFLETFTIKVETDLVEVASLLREEDIDLFEIAWVIHEIRSMKFSCGVPRWPPPTPTNAKYEGRGEPGPGLTYRGARSALVFRSVRRPSSSYNQEHTVVHIFA

Homology

[Close]

BLAST of Moc09g13560 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-04
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1   MAGNKSVVGPSSVKVLEAMVVLEGLRTVNFLETF-TIKVETDLVEVASLLREEDIDLFEI 60
           +AGN+ V   ++VK+LEA  +LEGLR +  L     + +ETD  EV SLL  +  DL + 
Sbjct: 109 LAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIETDSAEVESLLNRKREDLTKT 168

Query: 61  AWVIHEIRSMKFSCGV 76
            WV+ EI +++ SC +
Sbjct: 169 GWVVEEILNLRDSCEI 184

[Close]

BLAST of Moc09g13560 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1   MAGNKSVVGPSSVKVLEAMVVLEGLRTVNFLETF-TIKVETDLVEVASLLREEDIDLFEI 60
           +AGN+ V   ++VK+LEA  +LEGLR +  L     + +ETD  EV SLL  +  DL + 
Sbjct: 109 LAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIETDSAEVESLLNRKREDLTKT 168

Query: 61  AWVIHEIRSMKFSCGV 76
            WV+ EI +++ SC +
Sbjct: 169 GWVVEEILNLRDSCEI 184

The following BLAST results are available for this feature:

BLAST of Moc09g13560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	2.4e-04	40.79	uncharacterized protein LOC111022403 [Momordica charantia]	[more]

BLAST of Moc09g13560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g13560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	1.2e-04	40.79	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Moc09g13560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g13560.1	Moc09g13560.1	mRNA