Moc09g12110 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g12110
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionDNA-directed DNA polymerase
Locationchr9: 10290821 .. 10293891 (+)
RNA-Seq ExpressionMoc09g12110
SyntenyMoc09g12110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCAGCTTGACAAAGATGGGTCTTGCTCGGTTACGGATGAGTCGGGGGAATGGACGGATTCACGTTGTGGGCAGATGTGTGAGGCGGGTCGTCGGCCTCGCGATTCCCCTGAACCTGATCCTCCACGGCCTTGGTGTTTACTTCATGTCTGGGCCATTGTCGCCATTCAGAGCTCGGCGACTAGGATGACTTGGTGTTTCAACTGAGTTCATTGGTTGAACCATCTCAGATATTTGGTAATGAGAATGACTTGAAATGTCGCTCCCCACAGACGGCGCCAAATGTTTATGCAAGAAAATGAACAAAGTCAAACCTTGGTCAAGGTCAGACTCGAGACTCGCTTGACTCTGAGCATAATAGAAAGACCTGCACAAGAGGGCAAAATCTTCTATGCTCAAGTCAGTAAGCTATTCAGACTGAATAGCAAGTTCGAGGAGATATTCGATACCTGGGGTAGAAATGAAGCCCTATATTTATAGGTGTGAGGTCCAACAAACCTCATGACTGGCGGTTATCCTTGTCGGATTATAGGTCGAACATGTCGGGTTGTGTAGATTGAACCTGAGCAGATCAGTCCGCCTGATAACAATATCGATCAGGAAAATGGCCAAGTCCCTCACATCGGAAGGTTCGAGGTGGAGTTGCCAGATATACCTCTTTGGGCGTATCAACGTCCTCTACATGGCACAACAATTTCCTTCCCCAAACATATACACCTCAGCTACTAATCCACATAGAATGACAAAAAAGAAGAAAAAGAAGACTCCATAACTAAAAGAAAGTGGAAACTTACCACATCAAAATGCACGTTTTGGATAAATTGGAAAAGTCACTTGATTTATTAAATAGAGTTTGATGGGTTAATGAGCTGAGATTATGAGGCTAATTATAACGTCCTAGGCCCAAGATTTGGAATCGGATGCGGTACCTAATTGTCCCGATATTTCCTTGCATCCCCTAAGACACCGTCTTCATCTAAGATACTTAGGTGGTTGCCCGACCCAAGATTGTTCCAAACCAAACACGCTTGATTTTGGAGTTCTTATGGTTGAGCCATTAAAAAGGAAGGTGCACCTTATTGATATAGGGAATGACTATAAATTATTTTAAGCTTTTATTAACCATGTTACATGATCTCAGGATTCCTATCAGTCGGATGTGGTATCGGTTTATCCATGTACCTCTCCTCTCTAATTAGACGTTATACTAAAACCTACATGAGTTGGCAGTTGACAACAAAGCAATTGATACTTAGATCTAAACATAAGTTTTGGATTTTGGGTTTTGAGAAGCATGTACTTCAGACTTTGATAGTGAATTGAGTTCTTAGAAAAGCATTCTTGTTATTCCAACTAGATCCTAGGAAATATTATTAAAGCAGATAGAATCATCATGTGAAAAGTCTGAGAGGTTTAACTCCTAACATATTATTAAAGGGAATAAAACCTGTTATGAGGGCAAAAAAAAATTGGACTACTCGAGAGCAGCTGATAAAACTCAATTATACAAAATGTAAAACGTGCTCTATTAAGTTAAAATGGAAGGAAGAATGCAATAGAAAATCACTTGTTCGACAACCTGACAGCTTGTCGAAACCAACTTCTTGATAACAAAATAGGCCTAATGAAAGCCTAGGAAAGTGAAGAAAGAATAAAGACATTCATATTATCATTAGGGGTGATATAAGCCCCAATCGGTGTCATGAGTTTCTCCAATTTTGATCTAATTTAGAAATTTGGTAGTACCTCACAGAACTACTTCTTTGACTTTTGAACTAGAAGTAGATGATAAGATGAAGTGAAAAGTAGCAAAAATTTTTATTTTTTCGATTTCCTAGGATAGAGAATGGCAATTAGTTGCTCAATAAGAATGGAGAGAGAACAAGCATTTTAAGAATACTTTCCAAGGTGGAGTGGGTAGGACAAGAAAGAAAGAAGGCTGAAAAATGACGATGGGAAGACCTAGAGGAACACAAAATCGTAAAAAATTAAGCGGTGATGAAAAAGTGGAAATCCTACTTCTCTTATTGAGAATTTTAATAGCACTTTGTAAAAATGCTCTATTTAAAAGCTATTCATGATAAAGTCATTAGTCATAGTGGGGAAGTTTAATAGTAAGGGAAGAAAGAAGTATGAAAAAGGTTGGGTTAAATATTAAAAGTATGTTGAAATAAAAGCATACTTTTAATGTTTGTTATTAACCGACATTAAAATGCCTCCAACAATGTCGGTTTCAGACCATCATTAGAAGCTAATTTTATTTTCCTTGAAATAAGTGTGTTTTTCCTCTGTCCATCATTGTTTCCTTTGTATTTTTATTTTTGACTATCATTAAAAGTCGTATTTTGAGGTTGCTAGGAGATCTGAGAGACAAAGGATGCACAGGGTAACTGCAGATGGTTCAGAGCAAGACTTGAAAAAATCAATAGCATTGACAACCAGGACAGATCAGATGAGTCTGTCATCAGTTCAAGTACAATAGTTGGGAAGTAGAGGAAAGGATAAGGGGAACAACTTAGCGAGGTGTTCAACAGGTTGTGGGTTTCAAGCCCCAGCTGTAAGACGGAATAGCGAGCTGATGAAGTCGCATAGGCGAGTGGCATCGTTGCCAGGGATTGATTCAACTTTACACTTTATGTTTTTGCTTAAGAAAATATGTGCTAGAAAGATTTCTTTTAACTACTGATTAGTGAATCTTGAAGGTGAATGCACGATCTACAAGGATTGAAATATCTACTAGACAACGAGATCCCAATAATTTTGGGAGGTCTTTTCTATCCACCGGTAGAGCACTAATAGATGTGCAGAATGAGGAGCTTACCATGAGAGTGAACGATCAACAGGTTACATTTTCTGTTTTTAATTCTGTTAAATTCCTTGCTGATGTAGAAGAATGTTCTCTCTTAAGACTTGCAGATGACGTGCTGAATAAGGAAATACAAAAGAAGACCTTGTTGGATCGCTTGGAGAAAGAACTTACCATAGCCTACGAACATGTAGGGGACACTGTCGATGCTGGAGCATCTCAATCCACAGGCGGCTCTAGCGATGAAGAAGAAGAAGATTAA

mRNA sequence

ATGTTCCAGCTTGACAAAGATGGGTCTTGCTCGGTTACGGATGAGTCGGGGGAATGGACGGATTCACGTTGTGGGCAGATGTGTGAGGCGGGTCGTCGGCCTCGCGATTCCCCTGAACCTGATCCTCCACGGCCTTGGTGTTTACTTCATGTCTGGGCCATTGTCGCCATTCAGAGCTCGGCGACTAGGATGACTTGGAGATCTGAGAGACAAAGGATGCACAGGGTAACTGCAGATGGTTCAGAGCAAGACTTGAAAAAATCAATAGCATTGACAACCAGGACAGATCAGATGAGTCTGTCATCAGTTCAAGTGAATGCACGATCTACAAGGATTGAAATATCTACTAGACAACGAGATCCCAATAATTTTGGGAGGTCTTTTCTATCCACCGGTAGAGCACTAATAGATGTGCAGAATGAGGAGCTTACCATGAGAGTGAACGATCAACAGGTTACATTTTCTGTTTTTAATTCTGTTAAATTCCTTGCTGATGTAGAAGAATGTTCTCTCTTAAGACTTGCAGATGACGTGCTGAATAAGGAAATACAAAAGAAGACCTTGTTGGATCGCTTGGAGAAAGAACTTACCATAGCCTACGAACATGTAGGGGACACTGTCGATGCTGGAGCATCTCAATCCACAGGCGGCTCTAGCGATGAAGAAGAAGAAGATTAA

Coding sequence (CDS)

ATGTTCCAGCTTGACAAAGATGGGTCTTGCTCGGTTACGGATGAGTCGGGGGAATGGACGGATTCACGTTGTGGGCAGATGTGTGAGGCGGGTCGTCGGCCTCGCGATTCCCCTGAACCTGATCCTCCACGGCCTTGGTGTTTACTTCATGTCTGGGCCATTGTCGCCATTCAGAGCTCGGCGACTAGGATGACTTGGAGATCTGAGAGACAAAGGATGCACAGGGTAACTGCAGATGGTTCAGAGCAAGACTTGAAAAAATCAATAGCATTGACAACCAGGACAGATCAGATGAGTCTGTCATCAGTTCAAGTGAATGCACGATCTACAAGGATTGAAATATCTACTAGACAACGAGATCCCAATAATTTTGGGAGGTCTTTTCTATCCACCGGTAGAGCACTAATAGATGTGCAGAATGAGGAGCTTACCATGAGAGTGAACGATCAACAGGTTACATTTTCTGTTTTTAATTCTGTTAAATTCCTTGCTGATGTAGAAGAATGTTCTCTCTTAAGACTTGCAGATGACGTGCTGAATAAGGAAATACAAAAGAAGACCTTGTTGGATCGCTTGGAGAAAGAACTTACCATAGCCTACGAACATGTAGGGGACACTGTCGATGCTGGAGCATCTCAATCCACAGGCGGCTCTAGCGATGAAGAAGAAGAAGATTAA

Protein sequence

MFQLDKDGSCSVTDESGEWTDSRCGQMCEAGRRPRDSPEPDPPRPWCLLHVWAIVAIQSSATRMTWRSERQRMHRVTADGSEQDLKKSIALTTRTDQMSLSSVQVNARSTRIEISTRQRDPNNFGRSFLSTGRALIDVQNEELTMRVNDQQVTFSVFNSVKFLADVEECSLLRLADDVLNKEIQKKTLLDRLEKELTIAYEHVGDTVDAGASQSTGGSSDEEEED
Homology
[Close]
BLAST of Moc09g12110 vs. NCBI nr
Match: XP_022147186.1 (uncharacterized protein LOC111016198 [Momordica charantia])

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-20
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 0 

Query: 112 IEISTRQRDPNNFGRSFLSTGRALIDVQNEELTMRVNDQQVTFSVFNSVKFLADVEECSL 171
           ++    +  P   GR FLSTGRALIDV N ELTMRVNDQQVTF +FNS+KF AD+EECSL
Sbjct: 85  LDYEVNKEIPIILGRPFLSTGRALIDVHNGELTMRVNDQQVTFILFNSIKFPADIEECSL 144

Query: 172 LRLADDVLNKEIQKKTLLDRLEKELTIAYE 202
           LRLADD+ ++E+Q + LLD+LE+E+T  +E
Sbjct: 145 LRLADDLRSEEMQTEELLDQLEEEITKIFE 174

[Close]
BLAST of Moc09g12110 vs. NCBI nr
Match: XP_022156989.1 (uncharacterized protein LOC111023818 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 6.6e-18
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 0 

Query: 121 PNNFGRSFLSTGRALIDVQNEELTMRVNDQQVTFSVFNSVKFLADVEECSLLRLADDVLN 180
           P   GR FLSTGRALIDV N ELT+RVNDQQVT S+FNS+K+  DVEECS LR+ADD+++
Sbjct: 191 PIILGRPFLSTGRALIDVHNGELTIRVNDQQVTLSIFNSIKYPIDVEECSWLRIADDLMS 250

Query: 181 KEIQKKTLLDRLEKELT 198
            EIQ + LL++LE ELT
Sbjct: 251 DEIQTEELLNQLEDELT 267

[Close]
BLAST of Moc09g12110 vs. NCBI nr
Match: XP_030502183.1 (uncharacterized protein LOC115717351 [Cannabis sativa])

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-12
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 0 

Query: 121 PNNFGRSFLSTGRALIDVQNEELTMRVNDQQVTFSVFNSVKFLADVEECSLLRLADDVLN 180
           P   GRSFL+TGR LIDVQNEELTMRVNDQ+VTF+VFN+++F  ++EECS + + D ++ 
Sbjct: 236 PIILGRSFLATGRTLIDVQNEELTMRVNDQKVTFNVFNAMRFPDEIEECSRISVIDSIVA 295

Query: 181 KEIQKKTLLD 191
           ++  K+   D
Sbjct: 296 EKFHKEACKD 305

[Close]
BLAST of Moc09g12110 vs. NCBI nr
Match: XP_022144016.1 (uncharacterized protein LOC111013805 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-12
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 0 

Query: 121 PNNFGRSFLSTGRALIDVQNEELTMRVNDQQVTFSVFNSVKFLADVEECSLLRLADDVLN 180
           P   GR FL+TGRAL+DV   ELTM V DQ+V FSV NS+KF A+ EECS+L++ D+ L 
Sbjct: 296 PIILGRPFLATGRALVDVNKGELTMHVQDQEVKFSVHNSMKFSAESEECSVLKILDEALM 355

Query: 181 KEIQKKTLLDRLE 194
           +E++ + +L+RLE
Sbjct: 356 EELEXEVMLERLE 368

[Close]
BLAST of Moc09g12110 vs. NCBI nr
Match: XP_030510177.1 (uncharacterized protein LOC115724938 [Cannabis sativa])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-11
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 0 

Query: 121 PNNFGRSFLSTGRALIDVQNEELTMRVNDQQVTFSVFNSVKFLADVEECSLLRLADDVLN 180
           P   GR FL+TGR LIDVQN ELTM+VNDQ+VTF+VFN+++FL ++EEC  L + D ++ 
Sbjct: 157 PIIIGRPFLATGRTLIDVQNGELTMKVNDQKVTFNVFNNMRFLNEIEECFRLSVIDSIVT 216

Query: 181 KEIQKKTLLDRLEKELTIAYE 202
           + I K+   D  EK ++  YE
Sbjct: 217 ERIYKEVWED--EKLISSLYE 235

[Close]
BLAST of Moc09g12110 vs. ExPASy TrEMBL
Match: A0A6J1D1L0 (uncharacterized protein LOC111016198 OS=Momordica charantia OX=3673 GN=LOC111016198 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-21
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 0 

Query: 112 IEISTRQRDPNNFGRSFLSTGRALIDVQNEELTMRVNDQQVTFSVFNSVKFLADVEECSL 171
           ++    +  P   GR FLSTGRALIDV N ELTMRVNDQQVTF +FNS+KF AD+EECSL
Sbjct: 85  LDYEVNKEIPIILGRPFLSTGRALIDVHNGELTMRVNDQQVTFILFNSIKFPADIEECSL 144

Query: 172 LRLADDVLNKEIQKKTLLDRLEKELTIAYE 202
           LRLADD+ ++E+Q + LLD+LE+E+T  +E
Sbjct: 145 LRLADDLRSEEMQTEELLDQLEEEITKIFE 174

[Close]
BLAST of Moc09g12110 vs. ExPASy TrEMBL
Match: A0A6J1DV77 (uncharacterized protein LOC111023818 OS=Momordica charantia OX=3673 GN=LOC111023818 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.2e-18
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 0 

Query: 121 PNNFGRSFLSTGRALIDVQNEELTMRVNDQQVTFSVFNSVKFLADVEECSLLRLADDVLN 180
           P   GR FLSTGRALIDV N ELT+RVNDQQVT S+FNS+K+  DVEECS LR+ADD+++
Sbjct: 191 PIILGRPFLSTGRALIDVHNGELTIRVNDQQVTLSIFNSIKYPIDVEECSWLRIADDLMS 250

Query: 181 KEIQKKTLLDRLEKELT 198
            EIQ + LL++LE ELT
Sbjct: 251 DEIQTEELLNQLEDELT 267

[Close]
BLAST of Moc09g12110 vs. ExPASy TrEMBL
Match: A0A6J1CS22 (uncharacterized protein LOC111013805 OS=Momordica charantia OX=3673 GN=LOC111013805 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-12
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 0 

Query: 121 PNNFGRSFLSTGRALIDVQNEELTMRVNDQQVTFSVFNSVKFLADVEECSLLRLADDVLN 180
           P   GR FL+TGRAL+DV   ELTM V DQ+V FSV NS+KF A+ EECS+L++ D+ L 
Sbjct: 296 PIILGRPFLATGRALVDVNKGELTMHVQDQEVKFSVHNSMKFSAESEECSVLKILDEALM 355

Query: 181 KEIQKKTLLDRLE 194
           +E++ + +L+RLE
Sbjct: 356 EELEXEVMLERLE 368

[Close]
BLAST of Moc09g12110 vs. ExPASy TrEMBL
Match: A0A6J1DUG5 (uncharacterized protein LOC111024456 OS=Momordica charantia OX=3673 GN=LOC111024456 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.5e-11
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 0 

Query: 121 PNNFGRSFLSTGRALIDVQNEELTMRVNDQQVTFSVFNSVKFLADVEECSLLRLADDVLN 180
           P   GR FL TGRAL+DV   ELTMRV DQ+V FS+  S+KF A+ EEC +L+L D+ L 
Sbjct: 110 PIILGRPFLPTGRALVDVHKGELTMRVQDQEVKFSIHXSMKFPAESEECXILKLWDEALM 169

Query: 181 KEIQKKTLLDRLE 194
           KE++ + +L+ LE
Sbjct: 170 KELETEPMLEHLE 182

[Close]
BLAST of Moc09g12110 vs. ExPASy TrEMBL
Match: A0A6J1DWU8 (uncharacterized protein LOC111023871 OS=Momordica charantia OX=3673 GN=LOC111023871 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.1e-10
Identity = 32/65 (49.23%), Postives = 51/65 (78.46%), Query Frame = 0 

Query: 125 GRSFLSTGRALIDVQNEELTMRVNDQQVTFSVFNSVKFLADVEECSLLRLADDVLNKEIQ 184
           GR F++TGRAL+DV   ELTMRV DQ+V FSV++S+KF  + EEC +L++ D+ L ++++
Sbjct: 95  GRPFIATGRALVDVHKRELTMRVQDQEVKFSVYDSIKFSIESEECKVLKILDEALMEKLE 154

Query: 185 KKTLL 190
           ++ +L
Sbjct: 155 EEAIL 159

The following BLAST results are available for this feature:
BLAST of Moc09g12110 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022147186.11.9e-2062.22uncharacterized protein LOC111016198 [Momordica charantia][more]
XP_022156989.16.6e-1867.53uncharacterized protein LOC111023818 [Momordica charantia][more]
XP_030502183.15.4e-1255.71uncharacterized protein LOC115717351 [Cannabis sativa][more]
XP_022144016.15.4e-1254.79uncharacterized protein LOC111013805 [Momordica charantia][more]
XP_030510177.11.6e-1151.85uncharacterized protein LOC115724938 [Cannabis sativa][more]
BLAST of Moc09g12110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g12110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D1L09.0e-2162.22uncharacterized protein LOC111016198 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A6J1DV773.2e-1867.53uncharacterized protein LOC111023818 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CS222.6e-1254.79uncharacterized protein LOC111013805 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DUG56.5e-1153.42uncharacterized protein LOC111024456 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DWU87.1e-1049.23uncharacterized protein LOC111023871 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
BLAST of Moc09g12110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g12110.1Moc09g12110.1mRNA