Moc09g12050 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g12050
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Location	chr9: 10265938 .. 10267282 (+)
RNA-Seq Expression	Moc09g12050
Synteny	Moc09g12050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAGTGTCAGGGCCTCGGGTATAAATGGTCGAGGGCTGATACGTCACTAATTGGGTATCGAGGCCTCGGGTATAAATGGTCGGGGCTCGATACACCAATATTGGATAAAGATGAGCGTCGAGGCCTCGGGTATAAATGGTCGGGGGTCGATGCGAGGAGTCTTTCGAAAGGAGAACTATTGGGGCCTTGGGTATAAATGGTCAAGGGCCAATAGATTGTAAGACATCGAGGCCTCGGGTATAAATGGTCGAGGGCCGATGCAGCAGGGTCGGGGCTCTGCGTATAAATGGTTAGGGGCCGACTCTATTTGAAGGAGATAGCTGTGGAAGGGTATGATAACTGAGATAAGCTTAGAGGTACTGGTAATATTAGGGAGACTAGAGCTTGGATGTTAACATGTTTCCTGGTTGTGGTTCTCACTAATATGTTACGAAATGCGTATATGTTTAAATGCATAATGTATTGAAAAACATGATTACGAATGTTTCTTGATATAGTTGAGCATGACGTGTGTGTGTGTTGGTGAGGGCTATTTACGGAGTATATTTTATATACTCACCCCCCCTCTATAATGATTGTTTCAGGTGAAGGACTCGTGGGTGACCATGGTGATGGGACGGAGGAGATATGACGAGTGAGGACCATAGGCTGCTTAGTTACTCCTGTTTAGTTTAAGTCATTTTTTAAGGCCTTATGTTACGGCCAATAAACGGTTTATTTGTATTTGAATAATTGAGAGATTTTTCCCTTGTTGTTAGTTTCACTTTAGGATATGGGCCTATTTGAGTTTCATTCCATTTATTTAGATTCATATAGATTGAGAAATAAACTTGCCTCGTGAAGTGGTTCACGAATGTTGTTGAATGTTATACTATGAGATTGATTTATCGCTAAATTGATGAGGATTGGAACTTGATTTTATATGTTTGTTGCATAGGAAGTTGGCAGGATGTAGTCGGGGTTAAATTTTATTAGTTGGGTAGTTAATGTGACCTAGAGGTGTGCGGGAAATTCTGGGTCGTTACACTAGAGAGTTACCTATCACTAAGATTGTCGAGTTTATTCGCGACTTGCTACAAAGATGGTTCCACGAAAGAAGGACTCACTGGTCCACCCAAAACACCTCTCATTCAGACTATGCAGAAGAGCGACTTATACTAGAGTTTGAGAAGTCTCGTCGCTACACAGTCAAACTAGTCGACTGGTGCATGTTTCATGTTGAGGACGGTGGCTTGGACGGGACGGTTGATTTGAATGCAAGTCATGTACATGCATGGAGTTCCAGTACATGGGCATTCCATGTTCGCACGCAATTGCAGCAGCGAGGCACAAGAATATAA

mRNA sequence

ATGGGTGAGTGTCAGGGCCTCGGGTATAAATGGTCGAGGGCTGATACGTCACTAATTGGGTATCGAGGCCTCGGGTATAAATGGTCGGGGCTCGATACACCAATATTGGATAAAGATGAGCGTCGAGGCCTCGGGTATAAATGGTCGGGGGTCGATGCGAGGAGTCTTTCGAAAGGAGAACTATTGGGGCCTTGGGTGAAGGACTCGTGGGTGACCATGGTGATGGGACGGAGGAGATATGACGAAGGTGTGCGGGAAATTCTGGGTCGTTACACTAGAGAGTTACCTATCACTAAGATTGTCGAGTTTATTCGCGACTTGCTACAAAGATGGTTCCACGAAAGAAGGACTCACTGGTCCACCCAAAACACCTCTCATTCAGACTATGCAGAAGAGCGACTTATACTAGAGTTTGAGAAGTCTCGTCGCTACACAGTCAAACTAGTCGACTGGTGCATGTTTCATGTTGAGGACGGTGGCTTGGACGGGACGGTTGATTTGAATGCAAGTCATGTACATGCATGGAGTTCCAGTACATGGGCATTCCATGTTCGCACGCAATTGCAGCAGCGAGGCACAAGAATATAA

Coding sequence (CDS)

ATGGGTGAGTGTCAGGGCCTCGGGTATAAATGGTCGAGGGCTGATACGTCACTAATTGGGTATCGAGGCCTCGGGTATAAATGGTCGGGGCTCGATACACCAATATTGGATAAAGATGAGCGTCGAGGCCTCGGGTATAAATGGTCGGGGGTCGATGCGAGGAGTCTTTCGAAAGGAGAACTATTGGGGCCTTGGGTGAAGGACTCGTGGGTGACCATGGTGATGGGACGGAGGAGATATGACGAAGGTGTGCGGGAAATTCTGGGTCGTTACACTAGAGAGTTACCTATCACTAAGATTGTCGAGTTTATTCGCGACTTGCTACAAAGATGGTTCCACGAAAGAAGGACTCACTGGTCCACCCAAAACACCTCTCATTCAGACTATGCAGAAGAGCGACTTATACTAGAGTTTGAGAAGTCTCGTCGCTACACAGTCAAACTAGTCGACTGGTGCATGTTTCATGTTGAGGACGGTGGCTTGGACGGGACGGTTGATTTGAATGCAAGTCATGTACATGCATGGAGTTCCAGTACATGGGCATTCCATGTTCGCACGCAATTGCAGCAGCGAGGCACAAGAATATAA

Protein sequence

MGECQGLGYKWSRADTSLIGYRGLGYKWSGLDTPILDKDERRGLGYKWSGVDARSLSKGELLGPWVKDSWVTMVMGRRRYDEGVREILGRYTRELPITKIVEFIRDLLQRWFHERRTHWSTQNTSHSDYAEERLILEFEKSRRYTVKLVDWCMFHVEDGGLDGTVDLNASHVHAWSSSTWAFHVRTQLQQRGTRI

Homology

[Close]

BLAST of Moc09g12050 vs. NCBI nr
Match: XP_022145824.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-35
Identity = 81/109 (74.31%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 68  DSWVTMVMGRRRYD-------EGVREILGRYTRELPITKIVEFIRDLLQRWFHERRTHWS 127
           + W       RRY+       E V  +L R  RELPITKIVEFIRDLLQRWFHERRTHWS
Sbjct: 162 ERWARCYQVGRRYENMTTNSAESVNALL-RKARELPITKIVEFIRDLLQRWFHERRTHWS 221

Query: 128 TQNTSHSDYAEERLILEFEKSRRYTVKLVDWCMFHVEDGGLDGTVDLNA 170
           TQNTSHSDYAEERL L+FEKSRRYTVK VDWCMF VEDGGLDGTVDLNA
Sbjct: 222 TQNTSHSDYAEERLALQFEKSRRYTVKPVDWCMFPVEDGGLDGTVDLNA 269

[Close]

BLAST of Moc09g12050 vs. NCBI nr
Match: XP_022156308.1 (uncharacterized protein LOC111023235 [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 2.6e-34
Identity = 79/109 (72.48%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 68  DSWVTMVMGRRRYD-------EGVREILGRYTRELPITKIVEFIRDLLQRWFHERRTHWS 127
           + W       RRY+       E V  +L R  RELPITKIVEFI DLLQRWFHERRTHWS
Sbjct: 144 ERWARCYQVGRRYENMTTNSAESVNALL-REARELPITKIVEFIHDLLQRWFHERRTHWS 203

Query: 128 TQNTSHSDYAEERLILEFEKSRRYTVKLVDWCMFHVEDGGLDGTVDLNA 170
           TQNTSHSDYAEERL L+FEKSRRYTVK VDWCMFHVED GLD TVDLNA
Sbjct: 204 TQNTSHSDYAEERLALQFEKSRRYTVKPVDWCMFHVEDDGLDRTVDLNA 251

[Close]

BLAST of Moc09g12050 vs. NCBI nr
Match: XP_022159086.1 (uncharacterized protein LOC111025530 [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 2.6e-34
Identity = 79/109 (72.48%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 68  DSWVTMVMGRRRYD-------EGVREILGRYTRELPITKIVEFIRDLLQRWFHERRTHWS 127
           + W       RRY+       E V  +L R   ELPITKIVEFIRDLLQRWFH RRTHWS
Sbjct: 285 ERWARCYQVGRRYENMTTNSAESVNVLL-REAIELPITKIVEFIRDLLQRWFHVRRTHWS 344

Query: 128 TQNTSHSDYAEERLILEFEKSRRYTVKLVDWCMFHVEDGGLDGTVDLNA 170
           TQNTSHSDYAEE+L L+FEKSRRYTVK VDWCMFHVEDGGLDGTVDLNA
Sbjct: 345 TQNTSHSDYAEEQLALQFEKSRRYTVKPVDWCMFHVEDGGLDGTVDLNA 392

[Close]

BLAST of Moc09g12050 vs. NCBI nr
Match: XP_022154302.1 (uncharacterized protein LOC111021597 [Momordica charantia])

HSP 1 Score: 154.5 bits (389), Expect = 9.7e-34
Identity = 74/88 (84.09%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 82  EGVREILGRYTRELPITKIVEFIRDLLQRWFHERRTHWSTQNTSHSDYAEERLILEFEKS 141
           E V  +L R   +LPITKIVEFIR+LLQRWFHERRTHWSTQNTSHSDYAEE+L L+FEKS
Sbjct: 7   ESVNALL-REASKLPITKIVEFIRELLQRWFHERRTHWSTQNTSHSDYAEEQLALQFEKS 66

Query: 142 RRYTVKLVDWCMFHVEDGGLDGTVDLNA 170
           RRYTVK VDWCMFHVEDGGLDGTVDLNA
Sbjct: 67  RRYTVKPVDWCMFHVEDGGLDGTVDLNA 93

[Close]

BLAST of Moc09g12050 vs. NCBI nr
Match: XP_022154347.1 (uncharacterized protein LOC111021633 [Momordica charantia])

HSP 1 Score: 151.8 bits (382), Expect = 6.3e-33
Identity = 73/88 (82.95%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 82  EGVREILGRYTRELPITKIVEFIRDLLQRWFHERRTHWSTQNTSHSDYAEERLILEFEKS 141
           E V  +L R  RELPITKIVEFIR+LLQRWFHERRTHWSTQNTSHSDYA+ERL L+FEKS
Sbjct: 7   ESVNALL-REARELPITKIVEFIRNLLQRWFHERRTHWSTQNTSHSDYADERLALQFEKS 66

Query: 142 RRYTVKLVDWCMFHVEDGGLDGTVDLNA 170
           RRYTVK VDWC+FHVEDGGLD TV+LNA
Sbjct: 67  RRYTVKPVDWCIFHVEDGGLDETVNLNA 93

[Close]

BLAST of Moc09g12050 vs. ExPASy TrEMBL
Match: A0A6J1CWE6 (protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC111015184 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 8.6e-36
Identity = 81/109 (74.31%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 68  DSWVTMVMGRRRYD-------EGVREILGRYTRELPITKIVEFIRDLLQRWFHERRTHWS 127
           + W       RRY+       E V  +L R  RELPITKIVEFIRDLLQRWFHERRTHWS
Sbjct: 162 ERWARCYQVGRRYENMTTNSAESVNALL-RKARELPITKIVEFIRDLLQRWFHERRTHWS 221

Query: 128 TQNTSHSDYAEERLILEFEKSRRYTVKLVDWCMFHVEDGGLDGTVDLNA 170
           TQNTSHSDYAEERL L+FEKSRRYTVK VDWCMF VEDGGLDGTVDLNA
Sbjct: 222 TQNTSHSDYAEERLALQFEKSRRYTVKPVDWCMFPVEDGGLDGTVDLNA 269

[Close]

BLAST of Moc09g12050 vs. ExPASy TrEMBL
Match: A0A6J1DQ99 (uncharacterized protein LOC111023235 OS=Momordica charantia OX=3673 GN=LOC111023235 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 79/109 (72.48%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 68  DSWVTMVMGRRRYD-------EGVREILGRYTRELPITKIVEFIRDLLQRWFHERRTHWS 127
           + W       RRY+       E V  +L R  RELPITKIVEFI DLLQRWFHERRTHWS
Sbjct: 144 ERWARCYQVGRRYENMTTNSAESVNALL-REARELPITKIVEFIHDLLQRWFHERRTHWS 203

Query: 128 TQNTSHSDYAEERLILEFEKSRRYTVKLVDWCMFHVEDGGLDGTVDLNA 170
           TQNTSHSDYAEERL L+FEKSRRYTVK VDWCMFHVED GLD TVDLNA
Sbjct: 204 TQNTSHSDYAEERLALQFEKSRRYTVKPVDWCMFHVEDDGLDRTVDLNA 251

[Close]

BLAST of Moc09g12050 vs. ExPASy TrEMBL
Match: A0A6J1E2V3 (uncharacterized protein LOC111025530 OS=Momordica charantia OX=3673 GN=LOC111025530 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 79/109 (72.48%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 68  DSWVTMVMGRRRYD-------EGVREILGRYTRELPITKIVEFIRDLLQRWFHERRTHWS 127
           + W       RRY+       E V  +L R   ELPITKIVEFIRDLLQRWFH RRTHWS
Sbjct: 285 ERWARCYQVGRRYENMTTNSAESVNVLL-REAIELPITKIVEFIRDLLQRWFHVRRTHWS 344

Query: 128 TQNTSHSDYAEERLILEFEKSRRYTVKLVDWCMFHVEDGGLDGTVDLNA 170
           TQNTSHSDYAEE+L L+FEKSRRYTVK VDWCMFHVEDGGLDGTVDLNA
Sbjct: 345 TQNTSHSDYAEEQLALQFEKSRRYTVKPVDWCMFHVEDGGLDGTVDLNA 392

[Close]

BLAST of Moc09g12050 vs. ExPASy TrEMBL
Match: A0A6J1DLB7 (uncharacterized protein LOC111021597 OS=Momordica charantia OX=3673 GN=LOC111021597 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 4.7e-34
Identity = 74/88 (84.09%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 82  EGVREILGRYTRELPITKIVEFIRDLLQRWFHERRTHWSTQNTSHSDYAEERLILEFEKS 141
           E V  +L R   +LPITKIVEFIR+LLQRWFHERRTHWSTQNTSHSDYAEE+L L+FEKS
Sbjct: 7   ESVNALL-REASKLPITKIVEFIRELLQRWFHERRTHWSTQNTSHSDYAEEQLALQFEKS 66

Query: 142 RRYTVKLVDWCMFHVEDGGLDGTVDLNA 170
           RRYTVK VDWCMFHVEDGGLDGTVDLNA
Sbjct: 67  RRYTVKPVDWCMFHVEDGGLDGTVDLNA 93

[Close]

BLAST of Moc09g12050 vs. ExPASy TrEMBL
Match: A0A6J1DLF8 (uncharacterized protein LOC111021633 OS=Momordica charantia OX=3673 GN=LOC111021633 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.0e-33
Identity = 73/88 (82.95%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 82  EGVREILGRYTRELPITKIVEFIRDLLQRWFHERRTHWSTQNTSHSDYAEERLILEFEKS 141
           E V  +L R  RELPITKIVEFIR+LLQRWFHERRTHWSTQNTSHSDYA+ERL L+FEKS
Sbjct: 7   ESVNALL-REARELPITKIVEFIRNLLQRWFHERRTHWSTQNTSHSDYADERLALQFEKS 66

Query: 142 RRYTVKLVDWCMFHVEDGGLDGTVDLNA 170
           RRYTVK VDWC+FHVEDGGLD TV+LNA
Sbjct: 67  RRYTVKPVDWCIFHVEDGGLDETVNLNA 93

The following BLAST results are available for this feature:

BLAST of Moc09g12050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145824.1	1.8e-35	74.31	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia]	[more]
XP_022156308.1	2.6e-34	72.48	uncharacterized protein LOC111023235 [Momordica charantia]	[more]
XP_022159086.1	2.6e-34	72.48	uncharacterized protein LOC111025530 [Momordica charantia]	[more]
XP_022154302.1	9.7e-34	84.09	uncharacterized protein LOC111021597 [Momordica charantia]	[more]
XP_022154347.1	6.3e-33	82.95	uncharacterized protein LOC111021633 [Momordica charantia]	[more]

BLAST of Moc09g12050 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g12050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWE6	8.6e-36	74.31	protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DQ99	1.2e-34	72.48	uncharacterized protein LOC111023235 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1E2V3	1.2e-34	72.48	uncharacterized protein LOC111025530 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DLB7	4.7e-34	84.09	uncharacterized protein LOC111021597 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1DLF8	3.0e-33	82.95	uncharacterized protein LOC111021633 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of Moc09g12050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g12050.1	Moc09g12050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0008270	zinc ion binding