Moc09g10690 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g10690
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr9: 9072605 .. 9074751 (+)
RNA-Seq ExpressionMoc09g10690
SyntenyMoc09g10690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGTAGTCCATATACCAGTCAAGAAACTATTGATTTTATTGATTATTTGGGGTTTCTGGTTAGGGAGGTGGAATCCACTTCCCAATAGAGCTCACTCTGTTAAGGACACAATTGAAGTTCTTGAATTCAACTGGAGGGATTATATGGTTCTTACACCAGTTAGGAATTGTTTGGGGTGAAAATTGTACTATCATGTAGAGGACAAAGAAAGGTCTAACTTTGAAGGTCTTCCCTGATGGCCGACCTGAGACCTTTCCCTGAAGGTCTTCTCTGAAGATCATTCAAGGGAGGAACGACCTTCCATACTTCGCCGAATTCCAGATGACAAGAGTATGAACTGGAATAGTTGCTCCAGACAGGCCGACCTTGGTCCCAACATGTTTAACCTCTGGTCGGATTTCTTGTCGAGTACCTCAACCTATAAATATGACACTTCACTCTTTAGTCAGGTATGATATTCTAGCTTGACCTCCATACTAAGGTCGGACACAAAATTGACTTGCGCATCGGAGAGTTTGTTCCCTTGTGCAGGTTTTTCCTCGCCAAGTGACCTTCCAGCTCGTTCCTGACACTTCAGTTCATTCCAGTCAGCCTATACCTTGACCTCCTGAGTTGGTCATTCCTTCTCAAGGACACCCAAGCTCTCCCAATAGTTATACCTGGAGCAGGTCAAGCTCTTCCAACGGTCATACCTGGACCAGGTTATATCTCGATCAAATTTTTGCATAAACAAAGATTAAGTGTCAGTTTTTTTAATCATATAATGATTTATTATTTGTAATTTATAAACACATCTAGTCCCTTATAGGTTTATCCATCTACATATATAAGAAACTTAATAAAAAAAAAAAATCTCACGACGGAGATTAAATCGTTACAAACTTTAAATTATAAAAACTTAATCTTTACCTAGTAAAGTTTAGAGACTAAATTATTACTAATGAGTAGAGAGACTAAATCGTTACAAAAGACTAAATCATCACTTCAATGAAAATACATGGACCAAATATGTTTTTTTAGTACAACATGTGAGGTAGGAGATCAAACTCACAACCTCTTGGTTGGAACTATGAATTATCGCTGAGCTATACTCGCTTTGGCAGACCAAATATGTTTTTTAACCTTAAAAAATTAAGGATAAAATTTAAAATTTAAAATTGGACAAACTTGCCTGATAGCCCTTTAATTTGAACATATCAATTCTAGTTGGCAATCACATCAACGTTCGATTAAATCTAATGTAATATTTAATGACGGAGACTAAATCATAATGAATTTTAAACTATAGAGACTAAATTGTTATTTTTAAAAATTCAAGAGCTAGAAATTACCAAACAAAATATATAGTTTAACCTTAAAAAAAGAACTTAGGGGTTAGTGAAAAATTTATTACATAAGATTCTTTTATCCCAAAAGAAACAGGGAAGAGTGAGGAAGAAAGAAGTGGGGGCATGGGGGGATGGGAAATATAAAAAACGGGAGTGCCCCAAAAAAGTTAAGAGAGAGAATGGCGAGAAACTGTACCTCACTTGGCTGTGGCTGCAATAAATACTTTTCATTGTCCCTAATCTACTTTCCTCTTTCCTCTATTTTTCTCCCTCTATTCCTCTTCTCTCTCTGGTTTTGGTTTTGGTTTGGATGTTTGATTTTCATCTCAGTTTGTTAGGTCAAGCATTTATTTGCAGTCTCCCCAGTGATTCGTGTGCCATCTCTCACTCCATCAATCGGGTAAACTTTTTTTCTGCTTTTTCTCTTTCATTCAGATCCATTTCTGTGCTTTATGCTTGTGGGTAATTGTTCTGGAAGCTGTTCTTTGCGCCCAATACTGTGCCCTCCTTCACTGTTGGAGTTTTTGGTGGGAACTGGGAACTGGGAAGTATTTACCATCGAGGGTTCGATTGTGATGTTACTTCTTTTTTCTAATTTGAGCTGCTACCGTGTTTTTGATGATGGGTATTCTGTTTGGTGGTGTTTTAGGATCTTTTTGCGTTGTTTTCTCAAATTAGGTTCGATTTTGGGTGGAAATGTGTTTTTGGTCGTGTGTTGGGACTTGAGAGGGAGTAATTTGGAAGGGTGGTTTGGTGGTTCTTCCTGGAAAGCAAGAAGTGAGAATCAATCCAAATGTGTTGGTCTGATTTCCTGA

mRNA sequence

ATGCTGGTAGTCCATATACCAGTCAAGAAACTATTGATTTTATTGATTATTTGGGGTTTCTGGTTAGGGAGGTGGAATCCACTTCCCAATAGAGCTCACTCTGTTAAGGACACAATTGAAGTTCTTGAATTCAACTGGAGGGATTATATGGTTCTTACACCAGTCTTCTCTGAAGATCATTCAAGGGAGGAACGACCTTCCATACTTCGCCGAATTCCAGATGACAAGAGTATGAACTGGAATAGTTGCTCCAGACAGGCCGACCTTGGTCCCAACATGTTTAACCTCTGGTCGGATTTCTTGTCGAGTACCTCAACCTATAAATATGACACTTCACTCTTTAGTCAGGTTTTTCCTCGCCAAGACACCCAAGCTCTCCCAATAGTTATACCTGGAGCAGGTCAAGCTCTTCCAACGGTCATACCTGGACCAGATCCATTTCTGTGCTTTATGCTTGTGGGTAATTGTTCTGGAAGCTGTTCTTTGCGCCCAATACTGTGCCCTCCTTCACTGTTGGAGTTTTTGGTGGGAACTGGGAACTGGGAAGTATTTACCATCGAGGGTTCGATTTTGGGTGGAAATGTGTTTTTGGTCGTGTGTTGGGACTTGAGAGGGAGTAATTTGGAAGGGTGGTTTGGTGGTTCTTCCTGGAAAGCAAGAAGTGAGAATCAATCCAAATGTGTTGGTCTGATTTCCTGA

Coding sequence (CDS)

ATGCTGGTAGTCCATATACCAGTCAAGAAACTATTGATTTTATTGATTATTTGGGGTTTCTGGTTAGGGAGGTGGAATCCACTTCCCAATAGAGCTCACTCTGTTAAGGACACAATTGAAGTTCTTGAATTCAACTGGAGGGATTATATGGTTCTTACACCAGTCTTCTCTGAAGATCATTCAAGGGAGGAACGACCTTCCATACTTCGCCGAATTCCAGATGACAAGAGTATGAACTGGAATAGTTGCTCCAGACAGGCCGACCTTGGTCCCAACATGTTTAACCTCTGGTCGGATTTCTTGTCGAGTACCTCAACCTATAAATATGACACTTCACTCTTTAGTCAGGTTTTTCCTCGCCAAGACACCCAAGCTCTCCCAATAGTTATACCTGGAGCAGGTCAAGCTCTTCCAACGGTCATACCTGGACCAGATCCATTTCTGTGCTTTATGCTTGTGGGTAATTGTTCTGGAAGCTGTTCTTTGCGCCCAATACTGTGCCCTCCTTCACTGTTGGAGTTTTTGGTGGGAACTGGGAACTGGGAAGTATTTACCATCGAGGGTTCGATTTTGGGTGGAAATGTGTTTTTGGTCGTGTGTTGGGACTTGAGAGGGAGTAATTTGGAAGGGTGGTTTGGTGGTTCTTCCTGGAAAGCAAGAAGTGAGAATCAATCCAAATGTGTTGGTCTGATTTCCTGA

Protein sequence

MLVVHIPVKKLLILLIIWGFWLGRWNPLPNRAHSVKDTIEVLEFNWRDYMVLTPVFSEDHSREERPSILRRIPDDKSMNWNSCSRQADLGPNMFNLWSDFLSSTSTYKYDTSLFSQVFPRQDTQALPIVIPGAGQALPTVIPGPDPFLCFMLVGNCSGSCSLRPILCPPSLLEFLVGTGNWEVFTIEGSILGGNVFLVVCWDLRGSNLEGWFGGSSWKARSENQSKCVGLIS
Homology
[Close]
BLAST of Moc09g10690 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 5.6e-12
Identity = 40/56 (71.43%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 55  VFSEDHSREERPSILRRIPDDKSMNWNSCSRQADLGPNMFNLWSDFLSSTSTYKYD 111
           VF EDHS EERPSIL ++PDDKSMNWNS SRQADLGP+M N WSD LS     K D
Sbjct: 14  VFPEDHSWEERPSILSQVPDDKSMNWNSYSRQADLGPDMLNRWSDSLSGGLPAKTD 69

[Close]
BLAST of Moc09g10690 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.7e-12
Identity = 40/56 (71.43%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 55  VFSEDHSREERPSILRRIPDDKSMNWNSCSRQADLGPNMFNLWSDFLSSTSTYKYD 111
           VF EDHS EERPSIL ++PDDKSMNWNS SRQADLGP+M N WSD LS     K D
Sbjct: 14  VFPEDHSWEERPSILSQVPDDKSMNWNSYSRQADLGPDMLNRWSDSLSGGLPAKTD 69

The following BLAST results are available for this feature:
BLAST of Moc09g10690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143495.15.6e-1271.43LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia][more]
BLAST of Moc09g10690 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g10690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CNY72.7e-1271.43Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1[more]
BLAST of Moc09g10690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g10690.1Moc09g10690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid
molecular_function GO:0003676 nucleic acid binding