Moc09g08120 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g08120
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr9: 6477542 .. 6478493 (+)
RNA-Seq Expression	Moc09g08120
Synteny	Moc09g08120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTTCTTCATATGGAGACAATTCTGGTCTTTCTTTATCAAACCAGAATATACAAAATCGATCAATCCTGGGAACAAGGTTTCAAGTTCTTGCAGCACTCGAAGGACATGGTCTTGAAAGCTATGTCGATGAGGATTCTAAATCACCACCAAAGACAAGACGAATTACAAAAGGAGAAACATCAAGAGAAGAGATAAATCCTGACTGCACTCCATGGAAAAGGCAAGATCATCTTATTACTTCTTGGCTACTCGGCTCGATGTTAGAGGAGATTCTTTCTTAAATGCTTCATTGCACAACTGTAAAGGAAATATGGATCAATTTGCAACAAATGTTCTCTACTAGAAATTTGGCAAAGGTCGTGGAAATAAAAACTAAACTTCAGAACTTACGAAAAGGTAATCTTTCTCTGAAAGACTACCTTCGACAGGTAAAAAAATGGTGTATTCATTGACTGCTGCAAGAAAATATGTCCCAATTGAAGACCATATCATGCATATTCTATCTGGTCTTAGTCCAGATTTTGAATCCATCATCTTTGTTATTTCCTCCATCAAAGCACATTTATCAATACAAGTGAAAATGTGCATTAAAATGGCAAAATATGTCGGTTTTAGGTCATAATTAGTATGAATAGTGTTCAAGTCAAAATTCTTAGCTAAATATCCTTAGTCTTGAGAACTTTGGCCAAAAATAGCATAAACTCTCATATTCGTAGTTCATTTGCACAGGTTTTTAAAGAGGAGCTAAGAAGAGAACGAAGTGCTGAACCAGAGCAGAGAAGTCAAGACATTTTCAAGACAGACCATATAAATGTTGGAGCATTGCAATGCCAGAGCATGAGTGTCCGTACAGTTAATTCAAAAACATGGGATTCACTTTATGTCTATACAATCTCCAGTCGGGGAGATTTACATGCTGCAACTGACTTGAGACCGAACCTCTAG

mRNA sequence

ATGGCCTCTTCTTCATATGGAGACAATTCTGGTCTTTCTTTATCAAACCAGAATATACAAAATCGATCAATCCTGGGAACAAGGTTTCAAGTTCTTGCAGCACTCGAAGGACATGGTCTTGAAAGCTATGTCGATGAGGATTCTAAATCACCACCAAAGACAAGACGAATTACAAAAGGAGAAACATCAAGAGAAGAGATAAATCCTGACTGCACTCCATGGAAAAGGCAAGATCATCTTATTACTTCTTGGCTACTCGGCTCGATAAATTTGGCAAAGGTCGTGGAAATAAAAACTAAACTTCAGAACTTACGAAAAGGTAATCTTTCTCTGAAAGACTACCTTCGACAGGTTTTTAAAGAGGAGCTAAGAAGAGAACGAAGTGCTGAACCAGAGCAGAGAAGTCAAGACATTTTCAAGACAGACCATATAAATGTTGGAGCATTGCAATGCCAGAGCATGAGTGTCCGTACAGTTAATTCAAAAACATGGGATTCACTTTATGTCTATACAATCTCCAGTCGGGGAGATTTACATGCTGCAACTGACTTGAGACCGAACCTCTAG

Coding sequence (CDS)

ATGGCCTCTTCTTCATATGGAGACAATTCTGGTCTTTCTTTATCAAACCAGAATATACAAAATCGATCAATCCTGGGAACAAGGTTTCAAGTTCTTGCAGCACTCGAAGGACATGGTCTTGAAAGCTATGTCGATGAGGATTCTAAATCACCACCAAAGACAAGACGAATTACAAAAGGAGAAACATCAAGAGAAGAGATAAATCCTGACTGCACTCCATGGAAAAGGCAAGATCATCTTATTACTTCTTGGCTACTCGGCTCGATAAATTTGGCAAAGGTCGTGGAAATAAAAACTAAACTTCAGAACTTACGAAAAGGTAATCTTTCTCTGAAAGACTACCTTCGACAGGTTTTTAAAGAGGAGCTAAGAAGAGAACGAAGTGCTGAACCAGAGCAGAGAAGTCAAGACATTTTCAAGACAGACCATATAAATGTTGGAGCATTGCAATGCCAGAGCATGAGTGTCCGTACAGTTAATTCAAAAACATGGGATTCACTTTATGTCTATACAATCTCCAGTCGGGGAGATTTACATGCTGCAACTGACTTGAGACCGAACCTCTAG

Protein sequence

MASSSYGDNSGLSLSNQNIQNRSILGTRFQVLAALEGHGLESYVDEDSKSPPKTRRITKGETSREEINPDCTPWKRQDHLITSWLLGSINLAKVVEIKTKLQNLRKGNLSLKDYLRQVFKEELRRERSAEPEQRSQDIFKTDHINVGALQCQSMSVRTVNSKTWDSLYVYTISSRGDLHAATDLRPNL

Homology

[Close]

BLAST of Moc09g08120 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-11
Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 9   NSGLSLSNQNIQNRSILGTRFQVLAALEGHGLESYVDEDSKSPPKTRRITKGETSREEI- 68
           N G  +S   + + + L  +FQ+  AL+G+GLESY+D +  +P +  + T+ E+S   + 
Sbjct: 23  NPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQTTEDESSSSSLQ 82

Query: 69  -NPDCTPWKRQDHLITSWLLGSIN----------------------------LAKVVEIK 119
            NP    W +QD LI++WLLGS+N                            LA+V+++K
Sbjct: 83  QNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMFASRTLARVMQLK 142

[Close]

BLAST of Moc09g08120 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-10
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 0


Query: 28  RFQVLAALEGHGLESYVDEDSKSPPKTRRITKGETS--REEINPDCTPWKRQDHLITSWL 87
           +FQVL A++GHGLE Y+D D + P +  +   G TS   ++ NP+   W +QD LI+ WL
Sbjct: 19  KFQVLTAIQGHGLEQYIDSDIEPPSRFIQNGDGVTSSTTQQPNPEYFHWIKQDKLISLWL 78

Query: 88  LGSI----------------------------NLAKVVEIKTKLQNLRKGNLSLKDYLRQ 119
           LGS+                            NLA+V+++K+KL+N++KG+++LK+Y  +
Sbjct: 79  LGSMSEEILSQMLDCRMVKEIWTLLECTFASRNLARVMQLKSKLENMKKGSMNLKNYFLK 138

[Close]

BLAST of Moc09g08120 vs. NCBI nr
Match: RVW31306.1 (hypothetical protein CK203_112141 [Vitis vinifera])

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-09
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 30  QVLAALEGHGLESYVDEDSKSPPKTRRITKGETSREEINPDCTPWKRQDHLITSWLLGSI 89
           QV  A+ GH L+ ++ ++   P K   +T G+  + +INP+C  W++QD L  SWLL S+
Sbjct: 28  QVGVAIRGHKLQKFILKNENQPEKF--LTTGDHVQGKINPECLDWEQQDQLFFSWLLSSM 87

Query: 90  NLAKVVEI-KTKLQNLRKGNLSLKDYLRQV 119
               +  + KTKLQN++K +LS+KDYL ++
Sbjct: 88  TKVMLTRMFKTKLQNIKKDDLSVKDYLLKI 115

[Close]

BLAST of Moc09g08120 vs. NCBI nr
Match: GAY68041.1 (hypothetical protein CUMW_261070, partial [Citrus unshiu])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 30  QVLAALEGHGLESYVDEDSKSPPK--TRRITKGETSREE-INPDCTPWKRQDHLITSWLL 89
           Q+L+++  +GLESY+DE    P +    R   GE   E+  NPD   WKRQD L+ SW++
Sbjct: 211 QILSSIRRNGLESYIDESKPCPERFLLDRSGSGEACGEDRENPDFIAWKRQDQLLLSWIM 270

Query: 90  GSIN---LAKVVEIKTKLQNLRKGNLSLKDYLRQV 119
            S++   L+ VV +K  L NLRKG+LS+ +Y  ++
Sbjct: 271 SSMSLEILSLVVHLKMLLSNLRKGSLSMTEYFTKL 305

[Close]

BLAST of Moc09g08120 vs. NCBI nr
Match: GAY68044.1 (hypothetical protein CUMW_261070, partial [Citrus unshiu])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 30  QVLAALEGHGLESYVDEDSKSPPK--TRRITKGETSREE-INPDCTPWKRQDHLITSWLL 89
           Q+L+++  +GLESY+DE    P +    R   GE   E+  NPD   WKRQD L+ SW++
Sbjct: 37  QILSSIRRNGLESYIDESKPCPERFLLDRSGSGEACGEDRENPDFIAWKRQDQLLLSWIM 96

Query: 90  GSIN---LAKVVEIKTKLQNLRKGNLSLKDYLRQV 119
            S++   L+ VV +K  L NLRKG+LS+ +Y  ++
Sbjct: 97  SSMSLEILSLVVHLKMLLSNLRKGSLSMTEYFTKL 131

[Close]

BLAST of Moc09g08120 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 37/138 (26.81%), Postives = 62/138 (44.93%), Query Frame = 0


Query: 13  SLSNQNIQN-RSILGTRF-----QVLAALEGHGLESYVDEDSKSPPKTRRITKGETSREE 72
           S+ N N+ N   +  T +     QV A  +G+ L  ++D  +  PP     T G  +   
Sbjct: 14  SILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPP----ATIGTDAAPR 73

Query: 73  INPDCTPWKRQDHLITSWLLGSINLA----------------------------KVVEIK 117
           +NPD T WKRQD LI S +LG+I+++                             V +++
Sbjct: 74  VNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR 133

[Close]

BLAST of Moc09g08120 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.7e-04
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 30 QVLAALEGHGLESYVDEDSKSPPKTRRITKGETSREEINPDCTPWKRQDHLITSWLLGSI 89
          QV A  +G+ L  ++D  +  PP     T G  +   +NPD T W+RQD LI S +LG+I
Sbjct: 37 QVHALFDGYELAGFLDGSTPMPP----ATIGTDAVPRVNPDYTRWRRQDKLIYSAILGAI 95

Query: 90 NLA 93
          +++
Sbjct: 97 SMS 95

[Close]

BLAST of Moc09g08120 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.3e-12
Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 9   NSGLSLSNQNIQNRSILGTRFQVLAALEGHGLESYVDEDSKSPPKTRRITKGETSREEI- 68
           N G  +S   + + + L  +FQ+  AL+G+GLESY+D +  +P +  + T+ E+S   + 
Sbjct: 23  NPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQTTEDESSSSSLQ 82

Query: 69  -NPDCTPWKRQDHLITSWLLGSIN----------------------------LAKVVEIK 119
            NP    W +QD LI++WLLGS+N                            LA+V+++K
Sbjct: 83  QNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMFASRTLARVMQLK 142

[Close]

BLAST of Moc09g08120 vs. ExPASy TrEMBL
Match: A0A6J1DSS1 (uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023586 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 0


Query: 28  RFQVLAALEGHGLESYVDEDSKSPPKTRRITKGETS--REEINPDCTPWKRQDHLITSWL 87
           +FQVL A++GHGLE Y+D D + P +  +   G TS   ++ NP+   W +QD LI+ WL
Sbjct: 19  KFQVLTAIQGHGLEQYIDSDIEPPSRFIQNGDGVTSSTTQQPNPEYFHWIKQDKLISLWL 78

Query: 88  LGSI----------------------------NLAKVVEIKTKLQNLRKGNLSLKDYLRQ 119
           LGS+                            NLA+V+++K+KL+N++KG+++LK+Y  +
Sbjct: 79  LGSMSEEILSQMLDCRMVKEIWTLLECTFASRNLARVMQLKSKLENMKKGSMNLKNYFLK 138

[Close]

BLAST of Moc09g08120 vs. ExPASy TrEMBL
Match: A0A2H5QTU2 (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_261070 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.6e-09
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 30  QVLAALEGHGLESYVDEDSKSPPK--TRRITKGETSREE-INPDCTPWKRQDHLITSWLL 89
           Q+L+++  +GLESY+DE    P +    R   GE   E+  NPD   WKRQD L+ SW++
Sbjct: 37  QILSSIRRNGLESYIDESKPCPERFLLDRSGSGEACGEDRENPDFIAWKRQDQLLLSWIM 96

Query: 90  GSIN---LAKVVEIKTKLQNLRKGNLSLKDYLRQV 119
            S++   L+ VV +K  L NLRKG+LS+ +Y  ++
Sbjct: 97  SSMSLEILSLVVHLKMLLSNLRKGSLSMTEYFTKL 131

[Close]

BLAST of Moc09g08120 vs. ExPASy TrEMBL
Match: A0A2H5QTU0 (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_261070 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.6e-09
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 30  QVLAALEGHGLESYVDEDSKSPPK--TRRITKGETSREE-INPDCTPWKRQDHLITSWLL 89
           Q+L+++  +GLESY+DE    P +    R   GE   E+  NPD   WKRQD L+ SW++
Sbjct: 211 QILSSIRRNGLESYIDESKPCPERFLLDRSGSGEACGEDRENPDFIAWKRQDQLLLSWIM 270

Query: 90  GSIN---LAKVVEIKTKLQNLRKGNLSLKDYLRQV 119
            S++   L+ VV +K  L NLRKG+LS+ +Y  ++
Sbjct: 271 SSMSLEILSLVVHLKMLLSNLRKGSLSMTEYFTKL 305

[Close]

BLAST of Moc09g08120 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.5e-08
Identity = 42/141 (29.79%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 10  SGLSLSNQNIQNRSILGTRFQVLAALEGHGLESYVDEDSKSPPKTRRITKGETSRE--EI 69
           SG  +S   + + + L  +FQ+L ALE + LE++++ +S+ P K    T+  ++      
Sbjct: 25  SGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYLISTESSSASATGTP 84

Query: 70  NPDCTPWKRQDHLITSWLLGSIN----------------------------LAKVVEIKT 121
           NP    WKRQD LI+SWLLGS++                            LA+ ++ K 
Sbjct: 85  NPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIFSSRYLAQAMQFKN 144

The following BLAST results are available for this feature:

BLAST of Moc09g08120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154487.1	1.7e-11	34.29	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
XP_022156747.1	2.5e-10	34.71	uncharacterized protein LOC111023586 [Momordica charantia]	[more]
RVW31306.1	4.7e-09	40.00	hypothetical protein CK203_112141 [Vitis vinifera]	[more]
GAY68041.1	1.8e-08	41.05	hypothetical protein CUMW_261070, partial [Citrus unshiu]	[more]
GAY68044.1	1.8e-08	41.05	hypothetical protein CUMW_261070, partial [Citrus unshiu]	[more]

BLAST of Moc09g08120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.2e-04	26.81	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.7e-04	38.10	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Moc09g08120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLT9	8.3e-12	34.29	uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1DSS1	1.2e-10	34.71	uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A2H5QTU2	8.6e-09	41.05	Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_261070 PE=4...	[more]
A0A2H5QTU0	8.6e-09	41.05	Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_261070 PE=4...	[more]
A0A5A7U233	9.5e-08	29.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Moc09g08120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..71
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 23..118
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 23..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g08120.1	Moc09g08120.1	mRNA